MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP029238 Location: 1412000..1433674 Organism: Escherichia coli strain CJ236 Replicon: chromosome
Accession: NZ_CP029238 Location: 1412000..1433674 Organism: Escherichia coli strain CJ236 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF192_RS22680 () | 1407989..1408036 | + | 48 | WP_211180494.1 | protein YnaN | - |
| DF192_RS06925 () | 1408050..1409033 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| DF192_RS06930 () | 1409511..1410884 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| DF192_RS06935 () | 1411013..1411948 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| DF192_RS06940 () | 1412000..1413235 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| DF192_RS06945 () | 1413237..1413452 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| DF192_RS06950 () | 1413531..1413740 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1413556..1413734 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1413556..1413734 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1413556..1413734 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1413556..1413734 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| DF192_RS06955 () | 1413733..1413927 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| DF192_RS06960 () | 1413984..1414793 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| DF192_RS06965 () | 1414786..1417386 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| DF192_RS06970 () | 1417488..1417763 | - | 276 | WP_000632297.1 | protein RacC | - |
| DF192_RS06975 () | 1417838..1418008 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| DF192_RS06980 () | 1418008..1418229 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| DF192_RS06985 () | 1418671..1419159 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| DF192_RS06990 () | 1419156..1419311 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| DF192_RS07000 () | 1419765..1420241 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| DF192_RS07005 () | 1420365..1420661 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| DF192_RS07010 () | 1420684..1421106 | + | 423 | WP_000693797.1 | phage protein | - |
| DF192_RS07015 () | 1421119..1421976 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| DF192_RS07020 () | 1421983..1422729 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| DF192_RS07025 () | 1422752..1423204 | + | 453 | Protein_1366 | DUF1627 domain-containing protein | - |
| DF192_RS07030 () | 1423400..1423585 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| DF192_RS07035 () | 1423782..1425239 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| DF192_RS07040 () | 1425377..1425640 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| DF192_RS07045 () | 1425621..1425980 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| DF192_RS07055 () | 1426454..1427386 | + | 933 | Protein_1371 | phage tail length tape measure family protein | - |
| DF192_RS07060 () | 1427389..1427604 | + | 216 | Protein_1372 | Ail/Lom family outer membrane beta-barrel protein | - |
| DF192_RS07065 () | 1427746..1428726 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| DF192_RS07070 () | 1428796..1428984 | + | 189 | Protein_1374 | Ail/Lom family outer membrane beta-barrel protein | - |
| DF192_RS07075 () | 1429049..1432411 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DF192_RS07080 () | 1432411..1432986 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| DF192_RS07085 () | 1433084..1433674 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DF192_RS07090 () | 1433991..1434224 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| DF192_RS07095 () | 1434293..1434406 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DF192_RS07100 () | 1435185..1435619 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| DF192_RS07105 () | 1435760..1436893 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |