MGE detailed information
MGE type: Prophage MGE length: 45581 bp
Accession: NZ_CP029172 Location: 414113..459693 Organism: Staphylococcus aureus strain PTDrAP2 Replicon: chromosome
Accession: NZ_CP029172 Location: 414113..459693 Organism: Staphylococcus aureus strain PTDrAP2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DD562_RS02025 () | 410698..411870 | + | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| DD562_RS02030 () | 412085..414019 | + | 1935 | Protein_362 | YSIRK domain-containing triacylglycerol lipase Lip2/Geh | - |
| DD562_RS02035 () | 414113..415318 | - | 1206 | WP_000264745.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| DD562_RS02040 () | 415444..416058 | + | 615 | WP_000191466.1 | hypothetical protein | - |
| DD562_RS02045 () | 416431..417015 | - | 585 | WP_000825948.1 | hypothetical protein | - |
| DD562_RS02050 () | 417033..417494 | - | 462 | WP_109028188.1 | toxin | Toxin Detail |
| DD562_RS02055 () | 417507..417821 | - | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DD562_RS02060 () | 417973..418209 | + | 237 | WP_001121027.1 | helix-turn-helix domain-containing protein | - |
| DD562_RS02065 () | 418223..418999 | + | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| DD562_RS14950 () | 419028..419177 | + | 150 | WP_000771849.1 | hypothetical protein | - |
| DD562_RS02070 () | 419218..419430 | - | 213 | WP_000362644.1 | hypothetical protein | - |
| DD562_RS02075 () | 419500..419697 | + | 198 | WP_109028189.1 | hypothetical protein | - |
| DD562_RS02080 () | 419684..420064 | - | 381 | WP_000773060.1 | DUF2513 domain-containing protein | - |
| DD562_RS02085 () | 420131..420376 | + | 246 | WP_109028190.1 | DUF2829 domain-containing protein | Toxin Detail |
| - () | 420346..420388 | - | 43 | - | - | Antitoxin Detail |
| DD562_RS02090 () | 420435..420761 | + | 327 | WP_001588858.1 | hypothetical protein | - |
| DD562_RS02095 () | 420776..420919 | + | 144 | WP_000939502.1 | hypothetical protein | - |
| DD562_RS02100 () | 420909..421118 | - | 210 | WP_000642492.1 | hypothetical protein | - |
| DD562_RS02105 () | 421174..421389 | + | 216 | WP_001097552.1 | hypothetical protein | - |
| DD562_RS02110 () | 421414..421677 | + | 264 | WP_001124160.1 | IS3 family transposase ISVa4 | Transposase |
| DD562_RS02115 () | 421690..421851 | + | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| DD562_RS02120 () | 421930..422253 | + | 324 | WP_000174994.1 | hypothetical protein | - |
| DD562_RS02125 () | 422268..422630 | + | 363 | WP_031808061.1 | hypothetical protein | - |
| DD562_RS02130 () | 422627..423793 | + | 1167 | WP_109028191.1 | DUF2800 domain-containing protein | - |
| DD562_RS02135 () | 423820..424374 | + | 555 | WP_000647288.1 | DUF2815 family protein | - |
| DD562_RS02140 () | 424443..426395 | + | 1953 | WP_109028275.1 | DNA polymerase | - |
| DD562_RS02145 () | 426408..426593 | + | 186 | WP_001164629.1 | DUF3113 family protein | - |
| DD562_RS02150 () | 426593..426994 | + | 402 | WP_000113974.1 | PVL family protein | - |
| DD562_RS02155 () | 426994..427248 | + | 255 | WP_000022727.1 | DUF3310 domain-containing protein | - |
| DD562_RS02160 () | 427248..427496 | + | 249 | WP_078098708.1 | hypothetical protein | - |
| DD562_RS02165 () | 427510..427716 | + | 207 | WP_000693989.1 | hypothetical protein | - |
| DD562_RS02170 () | 427719..428120 | + | 402 | WP_031775152.1 | phage PVL protein | - |
| DD562_RS02175 () | 428117..428464 | + | 348 | WP_000979209.1 | hypothetical protein | - |
| DD562_RS02180 () | 428461..428769 | + | 309 | WP_109028192.1 | hypothetical protein | - |
| DD562_RS02185 () | 428762..429010 | + | 249 | WP_109028193.1 | DUF1024 family protein | - |
| DD562_RS02190 () | 429003..429539 | + | 537 | WP_000185680.1 | dUTPase | - |
| DD562_RS02195 () | 429576..429782 | + | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| DD562_RS02200 () | 429779..430165 | + | 387 | WP_109028194.1 | hypothetical protein | - |
| DD562_RS02205 () | 430162..430314 | + | 153 | WP_000595263.1 | transcriptional activator RinB | - |
| DD562_RS02210 () | 430382..430582 | + | 201 | WP_000265251.1 | DUF1514 family protein | - |
| DD562_RS02215 () | 430634..433081 | + | 2448 | WP_109028195.1 | virulence-associated E family protein | - |
| DD562_RS02220 () | 433184..433288 | - | 105 | WP_078099040.1 | hypothetical protein | - |
| DD562_RS02225 () | 433422..433712 | + | 291 | WP_001794602.1 | VRR-NUC domain-containing protein | - |
| DD562_RS02230 () | 433693..435060 | + | 1368 | WP_109028196.1 | DEAD/DEAH box helicase | - |
| DD562_RS02235 () | 435073..435510 | + | 438 | WP_000513702.1 | transcriptional regulator | - |
| DD562_RS02240 () | 435667..435981 | + | 315 | WP_000160693.1 | HNH endonuclease | - |
| DD562_RS02245 () | 436109..436414 | + | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| DD562_RS02250 () | 436404..438095 | + | 1692 | WP_031867414.1 | terminase large subunit | - |
| DD562_RS02255 () | 438100..439338 | + | 1239 | WP_001100664.1 | phage portal protein | - |
| DD562_RS02260 () | 439322..440095 | + | 774 | WP_031775146.1 | Clp protease ClpP | - |
| DD562_RS02265 () | 440107..441270 | + | 1164 | WP_001142738.1 | phage major capsid protein | - |
| DD562_RS02270 () | 441339..441617 | + | 279 | WP_000050973.1 | head-tail connector protein | - |
| DD562_RS02275 () | 441629..441961 | + | 333 | WP_016187452.1 | hypothetical protein | - |
| DD562_RS02280 () | 441958..442359 | + | 402 | WP_000110017.1 | hypothetical protein | - |
| DD562_RS02285 () | 442360..442755 | + | 396 | WP_001023808.1 | DUF3168 domain-containing protein | - |
| DD562_RS02290 () | 442790..443431 | + | 642 | WP_000807536.1 | tail protein | - |
| DD562_RS02295 () | 443523..443978 | + | 456 | WP_000169127.1 | Ig domain-containing protein | - |
| DD562_RS02300 () | 444036..444386 | + | 351 | WP_000589167.1 | hypothetical protein | - |
| DD562_RS02305 () | 444428..444586 | + | 159 | WP_000438833.1 | hypothetical protein | - |
| DD562_RS02310 () | 444600..450800 | + | 6201 | WP_109028197.1 | phage tail tape measure protein | - |
| DD562_RS02315 () | 450800..451624 | + | 825 | WP_031775783.1 | phage tail family protein | - |
| DD562_RS02320 () | 451633..453216 | + | 1584 | WP_109028198.1 | prophage endopeptidase tail family protein | - |
| DD562_RS02325 () | 453216..453506 | + | 291 | WP_000179860.1 | hypothetical protein | - |
| DD562_RS02330 () | 453522..455432 | + | 1911 | WP_031912956.1 | hypothetical protein | - |
| DD562_RS02335 () | 455432..456898 | + | 1467 | WP_109028199.1 | BppU family phage baseplate upper protein | - |
| DD562_RS02340 () | 456898..457287 | + | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| DD562_RS02345 () | 457280..457444 | + | 165 | WP_000916020.1 | XkdX family protein | - |
| DD562_RS02350 () | 457490..457789 | + | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| DD562_RS02355 () | 457925..458227 | + | 303 | WP_000339146.1 | phage holin | - |
| DD562_RS02360 () | 458239..459693 | + | 1455 | WP_021285991.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DD562_RS02375 () | 460827..461654 | - | 828 | WP_000136026.1 | alpha/beta hydrolase | - |
| DD562_RS02380 () | 461712..462926 | - | 1215 | WP_000286472.1 | NADH-dependent flavin oxidoreductase | - |
| DD562_RS02385 () | 463022..463114 | + | 93 | WP_014936975.1 | hypothetical protein | - |
| DD562_RS02390 () | 463228..464229 | + | 1002 | WP_000240067.1 | LLM class flavin-dependent oxidoreductase | - |
| DD562_RS02395 () | 464263..464595 | + | 333 | WP_000731878.1 | glycine cleavage system protein H | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|