MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 91246 bp
Accession: NZ_CP029110 Location: 1..91246 Organism: Escherichia coli strain AR436 Replicon: plasmid unnamed2
Accession: NZ_CP029110 Location: 1..91246 Organism: Escherichia coli strain AR436 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC23_RS00020 () | 1..157 | + | 157 | Protein_0 | IncI1-type relaxosome accessory protein NikA | - |
| CSC23_RS00025 () | 168..2867 | + | 2700 | WP_001474686.1 | Protein TraI | Relaxase |
| CSC23_RS00030 () | 2904..5195 | - | 2292 | WP_001289271.1 | hypothetical protein | - |
| CSC23_RS00035 () | 5188..6258 | - | 1071 | WP_000151575.1 | IncI1-type conjugal transfer protein TrbB | - |
| CSC23_RS00040 () | 6277..7485 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 7665..7727 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 7665..7727 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 7665..7727 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 7665..7727 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| CSC23_RS00045 () | 7777..7929 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| CSC23_RS00050 () | 8001..8252 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| CSC23_RS00055 () | 8613..9395 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| CSC23_RS00060 () | 9392..10414 | - | 1023 | WP_001572805.1 | IS21 family transposase IS100kyp | Transposase |
| - () | 10598..10649 | - | 52 | NuclAT_1 | - | - |
| - () | 10598..10649 | - | 52 | NuclAT_1 | - | - |
| - () | 10598..10649 | - | 52 | NuclAT_1 | - | - |
| - () | 10598..10649 | - | 52 | NuclAT_1 | - | - |
| CSC23_RS26270 () | 11135..11311 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| CSC23_RS00075 () | 11703..11912 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| CSC23_RS00080 () | 11984..12646 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CSC23_RS00085 () | 12717..14885 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| CSC23_RS00090 () | 14982..15566 | - | 585 | WP_001037998.1 | conjugal transfer protein TraX | - |
| CSC23_RS00095 () | 15595..16797 | - | 1203 | WP_001189158.1 | IncI1-type conjugal transfer protein TraW | - |
| CSC23_RS00100 () | 16764..17378 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| CSC23_RS00105 () | 17378..20422 | - | 3045 | WP_001024751.1 | IncI1-type conjugal transfer protein TraU | - |
| CSC23_RS00110 () | 20512..21312 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| CSC23_RS00115 () | 21296..21484 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| CSC23_RS00120 () | 21548..21952 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| CSC23_RS00125 () | 22003..22530 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| CSC23_RS00130 () | 22530..23234 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| CSC23_RS00135 () | 23234..24523 | - | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| CSC23_RS00140 () | 24526..25509 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| CSC23_RS00145 () | 25520..26212 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| CSC23_RS00150 () | 26209..26556 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| CSC23_RS00155 () | 26574..30341 | - | 3768 | WP_001141535.1 | hypothetical protein | - |
| CSC23_RS00160 () | 30431..30982 | - | 552 | WP_000014584.1 | Cardiolipin synthase A | VF |
| CSC23_RS00165 () | 30997..31287 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| CSC23_RS00170 () | 31284..32432 | - | 1149 | WP_001024972.1 | hypothetical protein | VF |
| CSC23_RS00175 () | 32429..33247 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| CSC23_RS00180 () | 33244..33702 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| CSC23_RS00185 () | 34097..34681 | - | 585 | WP_000977517.1 | histidine phosphatase family protein | - |
| CSC23_RS00190 () | 34741..35943 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| CSC23_RS00195 () | 36029..36853 | - | 825 | WP_001238927.1 | hypothetical protein | - |
| CSC23_RS00200 () | 37004..38158 | - | 1155 | WP_001139958.1 | integrase | - |
| CSC23_RS00210 () | 38849..39097 | + | 249 | WP_108720663.1 | hypothetical protein | - |
| CSC23_RS00215 () | 39094..40386 | - | 1293 | WP_032274560.1 | hypothetical protein | VF |
| CSC23_RS00220 () | 40386..41042 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| CSC23_RS00225 () | 41027..41587 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| CSC23_RS00230 () | 41597..42211 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| CSC23_RS00235 () | 42229..43326 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CSC23_RS00240 () | 43339..44892 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CSC23_RS00245 () | 44903..45355 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| CSC23_RS00250 () | 45342..46637 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| CSC23_RS00255 () | 46630..48312 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| CSC23_RS00260 () | 48326..48763 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| CSC23_RS00265 () | 48763..49830 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| CSC23_RS00275 () | 50504..50956 | - | 453 | WP_000008892.1 | hypothetical protein | - |
| CSC23_RS00280 () | 50999..51253 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| CSC23_RS00285 () | 51521..52087 | - | 567 | WP_000776428.1 | hypothetical protein | - |
| CSC23_RS00290 () | 52101..52754 | - | 654 | WP_106087059.1 | conjugal transfer protein TraC | - |
| CSC23_RS00305 () | 53362..53649 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| CSC23_RS00310 () | 53567..53830 | - | 264 | WP_001324596.1 | ash family protein | - |
| CSC23_RS00325 () | 54803..55834 | + | 1032 | WP_000907873.1 | replication initiation protein | - |
| CSC23_RS26005 () | 56530..56688 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| CSC23_RS00340 () | 56743..57012 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| CSC23_RS00345 () | 57009..57290 | + | 282 | WP_000970007.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CSC23_RS00350 () | 57330..58178 | + | 849 | WP_001057991.1 | 3'-5' exonuclease | - |
| CSC23_RS00355 () | 58295..58768 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| CSC23_RS26275 () | 59245..59511 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| CSC23_RS00370 () | 59511..60005 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| CSC23_RS00375 () | 60061..60663 | - | 603 | WP_000517695.1 | hypothetical protein | - |
| CSC23_RS00385 () | 61017..61901 | + | 885 | Protein_63 | hypothetical protein | - |
| CSC23_RS00390 () | 62084..63325 | + | 1242 | Protein_64 | IS1380 family transposase ISEcp1 | Transposase |
| CSC23_RS00395 () | 63341..64038 | - | 698 | Protein_65 | IS1 family transposase | - |
| CSC23_RS00405 () | 64447..65592 | + | 1146 | WP_000976514.1 | D-aminopeptidase | ARG |
| CSC23_RS00410 () | 65686..66219 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| CSC23_RS00415 () | 66216..66533 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| CSC23_RS00420 () | 66585..67055 | + | 471 | Protein_69 | hypothetical protein | - |
| CSC23_RS00425 () | 67334..69214 | + | 1881 | WP_001283341.1 | colicin 1B | - |
| CSC23_RS00430 () | 69232..69579 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| CSC23_RS00435 () | 69698..70045 | + | 348 | WP_000142436.1 | hypothetical protein | - |
| CSC23_RS00440 () | 70063..70653 | - | 591 | WP_000194550.1 | hypothetical protein | - |
| CSC23_RS00445 () | 70653..70907 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| CSC23_RS00450 () | 71259..72260 | + | 1002 | WP_000774875.1 | DUF4238 domain-containing protein | - |
| CSC23_RS00455 () | 72436..72780 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| CSC23_RS00460 () | 73279..73533 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| CSC23_RS00465 () | 73578..74504 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| CSC23_RS00475 () | 75062..75280 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CSC23_RS00480 () | 75282..75587 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CSC23_RS00485 () | 75588..76394 | + | 807 | WP_000016969.1 | site-specific integrase | - |
| CSC23_RS00490 () | 76574..77218 | + | 645 | WP_001144036.1 | ParA family protein | - |
| CSC23_RS00495 () | 77305..77613 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| CSC23_RS00500 () | 78027..79007 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| CSC23_RS00505 () | 79000..79416 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| CSC23_RS00510 () | 79418..80692 | - | 1275 | WP_000457493.1 | Y-family DNA polymerase | - |
| CSC23_RS00515 () | 80692..81129 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CSC23_RS00520 () | 81126..81374 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| CSC23_RS00530 () | 81792..82694 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| CSC23_RS00535 () | 82691..83002 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| CSC23_RS00540 () | 83079..83762 | + | 684 | WP_000086178.1 | DNA methylase | - |
| CSC23_RS00545 () | 83763..83984 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| CSC23_RS00550 () | 83996..84430 | + | 435 | WP_000274403.1 | DUF1380 family protein | - |
| CSC23_RS26010 () | 84481..85251 | + | 771 | WP_024133193.1 | hypothetical protein | - |
| CSC23_RS00565 () | 85792..86094 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| CSC23_RS00570 () | 86141..86563 | + | 423 | WP_000271725.1 | DUF1380 family protein | - |
| CSC23_RS00575 () | 86560..86751 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| CSC23_RS26280 () | 87084..87152 | - | 69 | Protein_98 | pilus protein | - |
| CSC23_RS00585 () | 87521..88048 | + | 528 | WP_001276116.1 | single-stranded DNA-binding protein | - |
| CSC23_RS00590 () | 88106..88339 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| CSC23_RS00595 () | 88398..90356 | + | 1959 | WP_001145458.1 | ParB/RepB/Spo0J family partition protein | - |
| CSC23_RS00600 () | 90411..90845 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| CSC23_RS00605 () | 90842..91246 | + | 405 | WP_032205726.1 | plasmid SOS inhibition protein A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|