MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP028703 Location: 2489209..2510915 Organism: Escherichia coli strain ME8067 Replicon: chromosome
Accession: NZ_CP028703 Location: 2489209..2510915 Organism: Escherichia coli strain ME8067 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBB47_RS12885 () | 2485724..2486470 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| DBB47_RS12890 () | 2486559..2487245 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| DBB47_RS12895 () | 2487422..2487625 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DBB47_RS12900 () | 2487660..2489120 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| DBB47_RS12905 () | 2489209..2490576 | - | 1368 | Protein_2350 | MHS family MFS transporter | - |
| DBB47_RS23965 () | 2491097..2491210 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| DBB47_RS12910 () | 2491279..2491512 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| DBB47_RS12915 () | 2491829..2492419 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DBB47_RS12920 () | 2492517..2493092 | - | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| DBB47_RS12925 () | 2493092..2494054 | - | 963 | WP_001027733.1 | phage tail protein | - |
| DBB47_RS12930 () | 2494005..2494574 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| DBB47_RS12940 () | 2494963..2495196 | + | 234 | WP_108118710.1 | YlcI/YnfO family protein | - |
| DBB47_RS12945 () | 2495254..2495664 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DBB47_RS12950 () | 2495816..2495989 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| DBB47_RS12955 () | 2496161..2496316 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| DBB47_RS23970 () | 2496395..2496460 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| DBB47_RS12960 () | 2496463..2496651 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| DBB47_RS12965 () | 2496662..2496874 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DBB47_RS12970 () | 2497237..2497734 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DBB47_RS12975 () | 2497731..2498264 | - | 534 | WP_001092971.1 | lysozyme | - |
| DBB47_RS12980 () | 2498261..2498572 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| DBB47_RS12985 () | 2498577..2498792 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DBB47_RS24240 () | 2499012..2499182 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| DBB47_RS12990 () | 2499546..2499761 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DBB47_RS12995 () | 2500062..2500274 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DBB47_RS23975 () | 2500329..2500418 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| DBB47_RS13000 () | 2500696..2501448 | - | 753 | WP_001047135.1 | antitermination protein | - |
| DBB47_RS13005 () | 2501462..2502511 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| DBB47_RS13010 () | 2502513..2502791 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| DBB47_RS13015 () | 2502858..2503109 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| DBB47_RS13020 () | 2503326..2503481 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DBB47_RS13025 () | 2503553..2503840 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DBB47_RS13030 () | 2503840..2504079 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DBB47_RS13035 () | 2504104..2504409 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| DBB47_RS13040 () | 2504612..2504944 | + | 333 | WP_001301033.1 | protein FlxA | - |
| DBB47_RS23980 () | 2505381..2505530 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| DBB47_RS13050 () | 2505565..2505843 | - | 279 | Protein_2382 | hypothetical protein | - |
| DBB47_RS13055 () | 2505827..2506057 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| DBB47_RS13060 () | 2506141..2506548 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| DBB47_RS13065 () | 2506715..2506870 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DBB47_RS13075 () | 2507030..2507248 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| DBB47_RS13085 () | 2507816..2508004 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DBB47_RS13090 () | 2508001..2508192 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| DBB47_RS13095 () | 2508285..2509052 | + | 768 | Protein_2389 | exonuclease | - |
| DBB47_RS13100 () | 2509049..2509744 | + | 696 | Protein_2390 | IS3 family transposase IS2 | Transposase |
| DBB47_RS13105 () | 2509758..2510915 | + | 1158 | Protein_2391 | Putative defective protein IntQ ; Integrase | Integrase |
| DBB47_RS13115 () | 2511103..2512122 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| DBB47_RS13120 () | 2512134..2513348 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DBB47_RS13130 () | 2513554..2513880 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| DBB47_RS13135 () | 2514015..2514356 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| DBB47_RS13140 () | 2514391..2514951 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| DBB47_RS13145 () | 2514954..2515664 | - | 711 | WP_032260954.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |