MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP028702 Location: 1845328..1867002 Organism: Escherichia coli strain J53 Replicon: chromosome
Accession: NZ_CP028702 Location: 1845328..1867002 Organism: Escherichia coli strain J53 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBB46_RS24670 () | 1841317..1841364 | + | 48 | WP_211180494.1 | protein YnaN | - |
| DBB46_RS09685 () | 1841378..1842361 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| DBB46_RS09695 () | 1842839..1844212 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| DBB46_RS09700 () | 1844341..1845276 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| DBB46_RS09705 () | 1845328..1846563 | - | 1236 | WP_000040852.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| DBB46_RS09710 () | 1846565..1846780 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| DBB46_RS09715 () | 1846859..1847068 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1846884..1847062 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1846884..1847062 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1846884..1847062 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1846884..1847062 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| DBB46_RS09720 () | 1847061..1847255 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| DBB46_RS09725 () | 1847312..1848121 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| DBB46_RS09730 () | 1848114..1850714 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| DBB46_RS09735 () | 1850816..1851091 | - | 276 | WP_000632297.1 | protein RacC | - |
| DBB46_RS09740 () | 1851166..1851336 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| DBB46_RS09745 () | 1851336..1851557 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| DBB46_RS09755 () | 1851999..1852487 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| DBB46_RS09760 () | 1852484..1852639 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| DBB46_RS09770 () | 1853093..1853569 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| DBB46_RS09775 () | 1853693..1853989 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| DBB46_RS09780 () | 1854012..1854434 | + | 423 | WP_000693797.1 | phage protein | - |
| DBB46_RS09785 () | 1854447..1855304 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| DBB46_RS09790 () | 1855311..1856057 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| DBB46_RS09795 () | 1856080..1856532 | + | 453 | Protein_1782 | DUF1627 domain-containing protein | - |
| DBB46_RS09800 () | 1856728..1856913 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| DBB46_RS09805 () | 1857110..1858567 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| DBB46_RS09815 () | 1858705..1858968 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| DBB46_RS09820 () | 1858949..1859308 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| DBB46_RS09830 () | 1859782..1860714 | + | 933 | Protein_1787 | phage tail length tape measure family protein | - |
| DBB46_RS09835 () | 1860717..1860932 | + | 216 | Protein_1788 | Ail/Lom family outer membrane beta-barrel protein | - |
| DBB46_RS09845 () | 1861074..1862054 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| DBB46_RS09850 () | 1862124..1862312 | + | 189 | Protein_1790 | Ail/Lom family outer membrane beta-barrel protein | - |
| DBB46_RS09855 () | 1862377..1865739 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DBB46_RS09860 () | 1865739..1866314 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| DBB46_RS09865 () | 1866412..1867002 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DBB46_RS09870 () | 1867319..1867552 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| DBB46_RS24400 () | 1867621..1867734 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DBB46_RS09875 () | 1868513..1868947 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| DBB46_RS09880 () | 1869088..1870221 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |