MGE detailed information
MGE type: Prophage MGE length: 112956 bp
Accession: NZ_CP028698 Location: 2435379..2548334 Organism: Escherichia coli strain 106 Replicon: chromosome
Accession: NZ_CP028698 Location: 2435379..2548334 Organism: Escherichia coli strain 106 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E35_RS12255 () | 2431279..2432499 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C9E35_RS12260 () | 2432624..2433319 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C9E35_RS12265 () | 2433272..2434564 | - | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C9E35_RS12270 () | 2434722..2435336 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C9E35_RS12275 () | 2435379..2436233 | - | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C9E35_RS12280 () | 2436235..2436852 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C9E35_RS12285 () | 2436863..2439286 | - | 2424 | WP_001414236.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E35_RS12290 () | 2439347..2441773 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E35_RS12295 () | 2441972..2442277 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E35_RS12300 () | 2442385..2443095 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E35_RS12305 () | 2443098..2443658 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E35_RS12310 () | 2443693..2444034 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E35_RS12315 () | 2444169..2444495 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E35_RS12325 () | 2444767..2445449 | - | 683 | Protein_2365 | DUF3596 domain-containing protein | - |
| C9E35_RS12330 () | 2445484..2445735 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E35_RS12335 () | 2445808..2448279 | - | 2472 | WP_000048458.1 | exonuclease | - |
| C9E35_RS12340 () | 2448372..2448563 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E35_RS12345 () | 2448560..2448748 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E35_RS12355 () | 2449317..2449535 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E35_RS12360 () | 2449607..2449906 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E35_RS12365 () | 2450259..2450537 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E35_RS12370 () | 2450539..2450730 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E35_RS12375 () | 2450751..2451122 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E35_RS12380 () | 2451220..2451522 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E35_RS12385 () | 2451519..2451944 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E35_RS12390 () | 2451967..2452929 | + | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| C9E35_RS12395 () | 2452936..2453676 | + | 741 | WP_000788938.1 | ATP-binding protein | - |
| C9E35_RS12400 () | 2453702..2454471 | + | 770 | Protein_2379 | DUF1627 domain-containing protein | - |
| C9E35_RS12405 () | 2454487..2454882 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E35_RS12410 () | 2454939..2455523 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E35_RS12415 () | 2455639..2455743 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E35_RS12420 () | 2455989..2456144 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E35_RS12425 () | 2456312..2456590 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E35_RS12430 () | 2456592..2457641 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E35_RS12435 () | 2457654..2458013 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E35_RS12440 () | 2458010..2458699 | + | 690 | WP_001059381.1 | antiterminator | - |
| C9E35_RS12465 () | 2459339..2459767 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E35_RS12470 () | 2459764..2460019 | + | 256 | Protein_2389 | DUF3927 family protein | - |
| C9E35_RS12475 () | 2460246..2462096 | + | 1851 | WP_070081082.1 | SASA family carbohydrate esterase | - |
| C9E35_RS12480 () | 2462536..2462751 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E35_RS12485 () | 2462756..2463100 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E35_RS12490 () | 2463151..2463684 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E35_RS12495 () | 2463955..2464524 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E35_RS12500 () | 2464524..2464670 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E35_RS12510 () | 2464898..2465083 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E35_RS12515 () | 2465508..2465735 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E35_RS12520 () | 2465777..2466142 | + | 366 | WP_000279786.1 | HNH endonuclease | - |
| C9E35_RS12530 () | 2466432..2466995 | + | 564 | WP_000958416.1 | terminase small subunit | - |
| C9E35_RS12535 () | 2466992..2468653 | + | 1662 | WP_001301491.1 | terminase large subunit | - |
| C9E35_RS12540 () | 2468717..2470654 | + | 1938 | WP_000173030.1 | phage major capsid protein | - |
| C9E35_RS12545 () | 2470699..2470920 | + | 222 | WP_001063094.1 | hypothetical protein | - |
| C9E35_RS12550 () | 2470866..2473445 | + | 2580 | WP_001304108.1 | phage portal protein | - |
| C9E35_RS12555 () | 2473448..2473774 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| C9E35_RS12560 () | 2473784..2474134 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| C9E35_RS12565 () | 2474131..2474577 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C9E35_RS12570 () | 2474574..2474918 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E35_RS12575 () | 2474984..2475700 | + | 717 | WP_001275434.1 | immunoglobulin domain-containing protein | - |
| C9E35_RS12580 () | 2475715..2476089 | + | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| C9E35_RS12585 () | 2476185..2476394 | + | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| C9E35_RS12590 () | 2476442..2479684 | + | 3243 | WP_000212822.1 | phage tail tape measure protein | - |
| C9E35_RS12595 () | 2479677..2480018 | + | 342 | WP_000807954.1 | phage tail protein | - |
| C9E35_RS12600 () | 2480018..2480716 | + | 699 | WP_001179481.1 | phage minor tail protein L | - |
| C9E35_RS12605 () | 2480727..2481470 | + | 744 | WP_000194720.1 | C40 family peptidase | - |
| C9E35_RS12610 () | 2481416..2482048 | + | 633 | WP_050439450.1 | tail assembly protein | - |
| C9E35_RS12615 () | 2482390..2483594 | + | 1205 | Protein_2416 | phage tail protein | - |
| C9E35_RS28420 () | 2483685..2485181 | + | 1497 | Protein_2417 | DUF1983 domain-containing protein | - |
| C9E35_RS28425 () | 2485209..2485864 | + | 656 | Protein_2418 | DUF3672 domain-containing protein | - |
| C9E35_RS12625 () | 2485932..2486531 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| C9E35_RS12630 () | 2486596..2487819 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C9E35_RS12635 () | 2487821..2488090 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E35_RS12640 () | 2488204..2488779 | + | 576 | Protein_2422 | hypothetical protein | VF |
| C9E35_RS12650 () | 2489490..2490140 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| C9E35_RS12655 () | 2490290..2490685 | + | 396 | Protein_2424 | IS256 family transposase ISEic2 | Transposase |
| C9E35_RS12660 () | 2490723..2492261 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C9E35_RS12665 () | 2492311..2492658 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C9E35_RS12670 () | 2492655..2493035 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C9E35_RS12675 () | 2493130..2493948 | + | 819 | Protein_2428 | IS256 family transposase IS1414 | Transposase |
| C9E35_RS12680 () | 2493998..2494240 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E35_RS12685 () | 2494418..2494969 | - | 552 | Protein_2430 | Putative defective protein IntQ ; Integrase | Integrase |
| C9E35_RS12690 () | 2494957..2496195 | - | 1239 | Protein_2431 | exonuclease | - |
| C9E35_RS12695 () | 2496288..2496476 | - | 189 | WP_000199475.1 | DUF1482 family protein | - |
| C9E35_RS12700 () | 2496473..2496661 | - | 189 | WP_000449175.1 | cell division inhibitor | - |
| C9E35_RS12710 () | 2497226..2497435 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| C9E35_RS12715 () | 2497436..2498074 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| C9E35_RS12720 () | 2498086..2498238 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| C9E35_RS12725 () | 2498531..2498869 | - | 339 | WP_001416688.1 | peptidase S24 | - |
| C9E35_RS12730 () | 2499261..2499503 | + | 243 | WP_000747948.1 | hypothetical protein | - |
| C9E35_RS12735 () | 2499487..2499912 | + | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| C9E35_RS12740 () | 2499981..2501024 | + | 1044 | WP_001262402.1 | hypothetical protein | - |
| C9E35_RS12745 () | 2501017..2501478 | + | 462 | WP_000139447.1 | replication protein | - |
| C9E35_RS12750 () | 2501512..2502228 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| C9E35_RS12755 () | 2502261..2502542 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C9E35_RS12760 () | 2502539..2502766 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C9E35_RS12765 () | 2502759..2503070 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| C9E35_RS12770 () | 2503198..2503416 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C9E35_RS12775 () | 2503418..2503975 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C9E35_RS12780 () | 2504266..2504421 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C9E35_RS12785 () | 2504541..2504885 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C9E35_RS12790 () | 2505007..2505279 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C9E35_RS12795 () | 2505281..2506330 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C9E35_RS12800 () | 2506343..2506648 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E35_RS12805 () | 2506711..2507265 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| C9E35_RS12810 () | 2507490..2507687 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| C9E35_RS12815 () | 2507823..2508536 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| C9E35_RS12830 () | 2508987..2509418 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| C9E35_RS12835 () | 2509415..2509670 | + | 256 | Protein_2457 | DUF3927 family protein | - |
| C9E35_RS12840 () | 2509896..2511746 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| C9E35_RS12845 () | 2512185..2512400 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E35_RS12850 () | 2512405..2512749 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E35_RS12855 () | 2512800..2513333 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E35_RS12860 () | 2513604..2514173 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E35_RS12865 () | 2514173..2514319 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| C9E35_RS12870 () | 2514542..2514727 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| C9E35_RS12875 () | 2515253..2515567 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| C9E35_RS12880 () | 2515649..2515873 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| C9E35_RS12890 () | 2516260..2516805 | + | 546 | WP_000867493.1 | terminase small subunit | - |
| C9E35_RS12895 () | 2516780..2518705 | + | 1926 | WP_001027223.1 | phage terminase large subunit family protein | - |
| C9E35_RS12900 () | 2518702..2518908 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C9E35_RS12905 () | 2518905..2520506 | + | 1602 | WP_070081084.1 | phage portal protein | - |
| C9E35_RS12910 () | 2520487..2521806 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| C9E35_RS12915 () | 2521816..2522148 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C9E35_RS12920 () | 2522204..2523229 | + | 1026 | WP_000063265.1 | major capsid protein | - |
| C9E35_RS12925 () | 2523271..2523669 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| C9E35_RS12930 () | 2523681..2524034 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| C9E35_RS12935 () | 2524049..2524582 | + | 534 | WP_000975020.1 | phage tail protein | - |
| C9E35_RS12940 () | 2524579..2524974 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| C9E35_RS12945 () | 2524982..2525734 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C9E35_RS12950 () | 2525748..2526170 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| C9E35_RS12955 () | 2526197..2526610 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C9E35_RS12960 () | 2526591..2529203 | + | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| C9E35_RS12965 () | 2529200..2529529 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C9E35_RS12970 () | 2529529..2530227 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| C9E35_RS12975 () | 2530238..2530981 | + | 744 | WP_000194798.1 | C40 family peptidase | - |
| C9E35_RS12980 () | 2530927..2531556 | + | 630 | WP_072147834.1 | tail assembly protein | - |
| C9E35_RS12985 () | 2531797..2535276 | + | 3480 | WP_000514945.1 | host specificity protein J | - |
| C9E35_RS12990 () | 2535344..2535943 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| C9E35_RS12995 () | 2536008..2537231 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C9E35_RS13000 () | 2537233..2537502 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E35_RS13005 () | 2537616..2538191 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| C9E35_RS13010 () | 2538264..2538893 | + | 630 | WP_001356599.1 | hypothetical protein | VF |
| C9E35_RS13015 () | 2538975..2539616 | + | 642 | WP_001143808.1 | hypothetical protein | VF |
| C9E35_RS13025 () | 2539778..2540020 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E35_RS13030 () | 2540152..2541435 | + | 1284 | Protein_2494 | MHS family MFS transporter YdfJ | - |
| C9E35_RS13035 () | 2541524..2542984 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| C9E35_RS13040 () | 2543020..2543223 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C9E35_RS13045 () | 2543400..2544086 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C9E35_RS13050 () | 2544175..2544921 | - | 747 | WP_000636568.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| C9E35_RS13055 () | 2545058..2547103 | + | 2046 | WP_001302117.1 | peptidyl-dipeptidase Dcp | - |
| C9E35_RS13060 () | 2547148..2547666 | - | 519 | WP_001024796.1 | 2-oxo-tetronate isomerase | - |
| C9E35_RS13065 () | 2547942..2548334 | + | 393 | WP_000671724.1 | YdeI family stress tolerance OB fold protein | - |
| C9E35_RS13070 () | 2548589..2549479 | + | 891 | WP_000592852.1 | diguanylate cyclase DgcZ | - |
| C9E35_RS28430 () | 2549594..2549698 | - | 105 | WP_211180496.1 | protein MgtT | - |
| C9E35_RS13075 () | 2549698..2549793 | - | 96 | WP_000901365.1 | protein MgtS | - |
| C9E35_RS13080 () | 2549901..2550872 | - | 972 | WP_001310251.1 | transcriptional regulator FtrA | - |
| C9E35_RS13085 () | 2550967..2551362 | + | 396 | WP_001271101.1 | rhodanese | - |
| C9E35_RS13090 () | 2551403..2552590 | - | 1188 | WP_001054199.1 | efflux MFS transporter YdeE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. Sakai | Prophage | TA1008 | NC_002695 | 2157035..2254487 | 0.005 |