MGE detailed information
MGE type: Prophage MGE length: 108372 bp
Accession: NZ_CP028685 Location: 2451181..2559552 Organism: Escherichia coli strain 111 Replicon: chromosome
Accession: NZ_CP028685 Location: 2451181..2559552 Organism: Escherichia coli strain 111 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E40_RS12370 () | 2447081..2448301 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C9E40_RS12375 () | 2448426..2449121 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C9E40_RS12380 () | 2449074..2450366 | - | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C9E40_RS12385 () | 2450524..2451138 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C9E40_RS12390 () | 2451181..2452035 | - | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C9E40_RS12395 () | 2452037..2452654 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C9E40_RS12400 () | 2452665..2455088 | - | 2424 | WP_001414236.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E40_RS12405 () | 2455149..2457575 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E40_RS12410 () | 2457774..2458079 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E40_RS12415 () | 2458187..2458897 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E40_RS12420 () | 2458900..2459460 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E40_RS12425 () | 2459495..2459836 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E40_RS12430 () | 2459971..2460297 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E40_RS12440 () | 2460569..2461251 | - | 683 | Protein_2387 | DUF3596 domain-containing protein | - |
| C9E40_RS12445 () | 2461286..2461537 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E40_RS12450 () | 2461610..2464081 | - | 2472 | WP_000048458.1 | exonuclease | - |
| C9E40_RS12455 () | 2464174..2464365 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E40_RS12460 () | 2464362..2464550 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E40_RS12470 () | 2465119..2465337 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E40_RS12475 () | 2465409..2465708 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E40_RS12480 () | 2466061..2466339 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E40_RS12485 () | 2466341..2466532 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E40_RS12490 () | 2466553..2466924 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E40_RS12495 () | 2467022..2467324 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E40_RS12500 () | 2467321..2467746 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E40_RS12505 () | 2467769..2468731 | + | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| C9E40_RS12510 () | 2468738..2469478 | + | 741 | WP_000788938.1 | ATP-binding protein | - |
| C9E40_RS12515 () | 2469504..2470273 | + | 770 | Protein_2401 | DUF1627 domain-containing protein | - |
| C9E40_RS12520 () | 2470289..2470684 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E40_RS12525 () | 2470741..2471325 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E40_RS12530 () | 2471441..2471545 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E40_RS12535 () | 2471791..2471946 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E40_RS12540 () | 2472114..2472392 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E40_RS12545 () | 2472394..2473443 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E40_RS12550 () | 2473456..2473815 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E40_RS12555 () | 2473812..2474501 | + | 690 | WP_001059381.1 | antiterminator | - |
| C9E40_RS12580 () | 2475140..2475568 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E40_RS12585 () | 2475565..2475820 | + | 256 | Protein_2411 | DUF3927 family protein | - |
| C9E40_RS12590 () | 2476047..2477897 | + | 1851 | WP_064234946.1 | SASA family carbohydrate esterase | - |
| C9E40_RS12595 () | 2478336..2478551 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E40_RS12600 () | 2478556..2478900 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E40_RS12605 () | 2478951..2479484 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E40_RS12610 () | 2479755..2480324 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E40_RS12615 () | 2480324..2480470 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E40_RS12625 () | 2480698..2480883 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E40_RS12630 () | 2481308..2481535 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E40_RS12635 () | 2481577..2481942 | + | 366 | WP_000279786.1 | HNH endonuclease | - |
| C9E40_RS12645 () | 2482232..2482795 | + | 564 | WP_000958416.1 | terminase small subunit | - |
| C9E40_RS12650 () | 2482792..2484453 | + | 1662 | WP_001301491.1 | terminase large subunit | - |
| C9E40_RS12655 () | 2484517..2486454 | + | 1938 | WP_000173030.1 | phage major capsid protein | - |
| C9E40_RS12660 () | 2486499..2486720 | + | 222 | WP_001063094.1 | hypothetical protein | - |
| C9E40_RS12665 () | 2486666..2489245 | + | 2580 | WP_001304108.1 | phage portal protein | - |
| C9E40_RS12670 () | 2489248..2489574 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| C9E40_RS12675 () | 2489584..2489934 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| C9E40_RS12680 () | 2489931..2490377 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C9E40_RS12685 () | 2490374..2490718 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E40_RS12690 () | 2490777..2491493 | + | 717 | WP_001275500.1 | tail protein | - |
| C9E40_RS12695 () | 2491499..2491873 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C9E40_RS12700 () | 2491969..2492178 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C9E40_RS12705 () | 2492231..2495311 | + | 3081 | WP_000212897.1 | phage tail tape measure protein | - |
| C9E40_RS12710 () | 2495304..2495645 | + | 342 | WP_000807954.1 | phage tail protein | - |
| C9E40_RS12715 () | 2495645..2496082 | + | 438 | WP_001152128.1 | phage minor tail protein L | - |
| C9E40_RS12720 () | 2496270..2499746 | + | 3477 | WP_000514792.1 | host specificity protein J | - |
| C9E40_RS12725 () | 2499814..2500413 | + | 600 | WP_001228304.1 | Outer membrane protein X | VF |
| C9E40_RS12730 () | 2500565..2501878 | + | 1314 | WP_000216532.1 | ISNCY family transposase KIS | Transposase |
| C9E40_RS12735 () | 2501880..2502149 | + | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E40_RS12740 () | 2502262..2502836 | + | 575 | Protein_2440 | hypothetical protein | VF |
| C9E40_RS12745 () | 2503176..2504501 | - | 1326 | WP_001025672.1 | hypothetical protein | VF |
| C9E40_RS12755 () | 2505162..2506076 | - | 915 | Protein_2442 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C9E40_RS12760 () | 2506099..2506221 | + | 123 | WP_106409364.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E40_RS12765 () | 2506328..2507239 | + | 912 | WP_000950979.1 | Protein kinase OspG | VF |
| C9E40_RS12770 () | 2507305..2507874 | + | 570 | WP_000938103.1 | Effector protein NleF | VF |
| C9E40_RS12775 () | 2507921..2508555 | - | 635 | Protein_2446 | IS256 family transposase ISEic2 | Transposase |
| C9E40_RS12780 () | 2508840..2510378 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C9E40_RS12785 () | 2510428..2510775 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C9E40_RS12790 () | 2510772..2511152 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C9E40_RS12795 () | 2511247..2512065 | + | 819 | Protein_2450 | IS256 family transposase IS1414 | Transposase |
| C9E40_RS12800 () | 2512115..2512357 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E40_RS12805 () | 2512535..2513086 | - | 552 | Protein_2452 | Putative defective protein IntQ ; Integrase | Integrase |
| C9E40_RS12810 () | 2513074..2514312 | - | 1239 | Protein_2453 | exonuclease | - |
| C9E40_RS12815 () | 2514405..2514593 | - | 189 | WP_000199475.1 | DUF1482 family protein | - |
| C9E40_RS12820 () | 2514590..2514778 | - | 189 | WP_000449175.1 | cell division inhibitor | - |
| C9E40_RS12830 () | 2515343..2515552 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| C9E40_RS12835 () | 2515553..2516191 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| C9E40_RS12840 () | 2516203..2516355 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| C9E40_RS12845 () | 2516648..2516986 | - | 339 | WP_001416688.1 | peptidase S24 | - |
| C9E40_RS12850 () | 2517378..2517620 | + | 243 | WP_000747948.1 | hypothetical protein | - |
| C9E40_RS12855 () | 2517604..2518029 | + | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| C9E40_RS12860 () | 2518098..2519141 | + | 1044 | WP_001262402.1 | hypothetical protein | - |
| C9E40_RS12865 () | 2519134..2519595 | + | 462 | WP_000139447.1 | replication protein | - |
| C9E40_RS12870 () | 2519629..2520345 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| C9E40_RS12875 () | 2520378..2520659 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C9E40_RS12880 () | 2520656..2520883 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C9E40_RS12885 () | 2520876..2521187 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| C9E40_RS12890 () | 2521315..2521533 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C9E40_RS12895 () | 2521535..2522092 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C9E40_RS12900 () | 2522383..2522538 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C9E40_RS12905 () | 2522658..2523002 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C9E40_RS12910 () | 2523124..2523396 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C9E40_RS12915 () | 2523398..2524447 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C9E40_RS12920 () | 2524460..2524765 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E40_RS12925 () | 2524828..2525382 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| C9E40_RS12930 () | 2525607..2525804 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| C9E40_RS12935 () | 2525940..2526653 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| C9E40_RS12950 () | 2527104..2527535 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| C9E40_RS12955 () | 2527532..2527787 | + | 256 | Protein_2479 | DUF3927 family protein | - |
| C9E40_RS12960 () | 2528013..2529863 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| C9E40_RS12965 () | 2530302..2530517 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E40_RS12970 () | 2530522..2530866 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E40_RS12975 () | 2530917..2531450 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E40_RS12980 () | 2531721..2532290 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E40_RS12985 () | 2532290..2532436 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| C9E40_RS12990 () | 2532659..2532844 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| C9E40_RS12995 () | 2533370..2533684 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| C9E40_RS13000 () | 2533766..2533990 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| C9E40_RS13010 () | 2534377..2534922 | + | 546 | WP_000867493.1 | terminase small subunit | - |
| C9E40_RS13015 () | 2534897..2536822 | + | 1926 | WP_001027223.1 | phage terminase large subunit family protein | - |
| C9E40_RS13020 () | 2536819..2537025 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C9E40_RS13025 () | 2537022..2538623 | + | 1602 | WP_001301524.1 | phage portal protein | - |
| C9E40_RS13030 () | 2538604..2539923 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| C9E40_RS13035 () | 2539933..2540265 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C9E40_RS13040 () | 2540321..2541346 | + | 1026 | WP_000063265.1 | major capsid protein | - |
| C9E40_RS13045 () | 2541388..2541786 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| C9E40_RS13050 () | 2541798..2542151 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| C9E40_RS13055 () | 2542166..2542699 | + | 534 | WP_000975020.1 | phage tail protein | - |
| C9E40_RS13060 () | 2542696..2543091 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| C9E40_RS13065 () | 2543099..2543851 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C9E40_RS13070 () | 2543865..2544287 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| C9E40_RS13075 () | 2544314..2544727 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C9E40_RS13080 () | 2544708..2547320 | + | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| C9E40_RS13085 () | 2547317..2547646 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C9E40_RS13090 () | 2547646..2548344 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| C9E40_RS13095 () | 2548355..2549098 | + | 744 | WP_000194798.1 | C40 family peptidase | - |
| C9E40_RS13100 () | 2549044..2549673 | + | 630 | WP_072147834.1 | tail assembly protein | - |
| C9E40_RS13105 () | 2549914..2553393 | + | 3480 | WP_000514945.1 | host specificity protein J | - |
| C9E40_RS13110 () | 2553461..2554060 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| C9E40_RS13115 () | 2554125..2555348 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C9E40_RS13120 () | 2555350..2555619 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E40_RS13125 () | 2555733..2556308 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| C9E40_RS13130 () | 2556381..2557010 | + | 630 | WP_001356599.1 | hypothetical protein | VF |
| C9E40_RS13135 () | 2557092..2557733 | + | 642 | WP_001143808.1 | hypothetical protein | VF |
| C9E40_RS13145 () | 2557895..2558137 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E40_RS13150 () | 2558269..2559552 | + | 1284 | Protein_2516 | MHS family MFS transporter YdfJ | - |
| C9E40_RS13155 () | 2559641..2561101 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| C9E40_RS13160 () | 2561137..2561340 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C9E40_RS13165 () | 2561517..2562203 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C9E40_RS13170 () | 2562292..2563038 | - | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. Sakai | Prophage | TA1008 | NC_002695 | 2157035..2254487 | 0.009 |