MGE detailed information
MGE type: Prophage MGE length: 87842 bp
Accession: NZ_CP028578 Location: 3720875..3808716 Organism: Escherichia coli strain WCHEC005784 Replicon: chromosome
Accession: NZ_CP028578 Location: 3720875..3808716 Organism: Escherichia coli strain WCHEC005784 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBQ99_RS20460 () | 3716860..3717882 | + | 1023 | WP_000155278.1 | autoinducer 2 ABC transporter substrate-binding protein LsrB | - |
| DBQ99_RS20465 () | 3717911..3718786 | + | 876 | WP_000774153.1 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase | - |
| DBQ99_RS20470 () | 3718835..3719125 | + | 291 | WP_000558519.1 | (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase | - |
| DBQ99_RS20475 () | 3719136..3719879 | + | 744 | WP_001081495.1 | epimerase | - |
| DBQ99_RS20480 () | 3719888..3719956 | + | 69 | Protein_3529 | VOC family protein | - |
| DBQ99_RS20485 () | 3720254..3720511 | + | 258 | WP_001333700.1 | YjhX family toxin | - |
| DBQ99_RS20490 () | 3720522..3720791 | + | 270 | Protein_3531 | class I SAM-dependent methyltransferase | - |
| DBQ99_RS20500 () | 3720875..3721843 | + | 969 | Protein_3532 | IS21 family transposase IS100kyp | Transposase |
| DBQ99_RS20505 () | 3721893..3722147 | + | 255 | Protein_3533 | IS21 family transposase IS100 | Transposase |
| DBQ99_RS20510 () | 3722169..3722735 | + | 567 | Protein_3534 | IS21 family transposase IS100 | Transposase |
| DBQ99_RS20515 () | 3723136..3724206 | - | 1071 | WP_000920172.1 | hypothetical protein | - |
| DBQ99_RS20520 () | 3724184..3725890 | - | 1707 | WP_000132880.1 | zinc ribbon domain-containing protein | - |
| DBQ99_RS20525 () | 3725883..3727091 | - | 1209 | WP_001087767.1 | type I restriction-modification system subunit M | - |
| DBQ99_RS20530 () | 3727243..3728211 | + | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
| DBQ99_RS20535 () | 3728399..3729607 | - | 1209 | WP_000772656.1 | hypothetical protein ; Integrase | Integrase |
| DBQ99_RS20550 () | 3730564..3731409 | + | 846 | WP_001619161.1 | AAA family ATPase | - |
| DBQ99_RS20555 () | 3731402..3731800 | + | 399 | WP_060581740.1 | hypothetical protein | - |
| DBQ99_RS20560 () | 3731800..3732465 | + | 666 | WP_000957441.1 | hypothetical protein | - |
| DBQ99_RS20565 () | 3732503..3732986 | - | 484 | Protein_3543 | DUF4113 domain-containing protein | - |
| DBQ99_RS20570 () | 3733396..3735285 | + | 1890 | WP_060581741.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| DBQ99_RS26245 () | 3735387..3735508 | - | 122 | Protein_3545 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| DBQ99_RS20575 () | 3735538..3736044 | + | 507 | WP_108084473.1 | hypothetical protein | - |
| DBQ99_RS20580 () | 3736047..3736457 | + | 411 | WP_001032316.1 | tail fiber assembly protein | - |
| DBQ99_RS20585 () | 3736438..3736671 | - | 234 | WP_001619155.1 | hypothetical protein | - |
| DBQ99_RS20595 () | 3738845..3740980 | - | 2136 | Protein_3550 | prophage tail fiber N-terminal domain-containing protein | - |
| DBQ99_RS20600 () | 3741045..3741644 | - | 600 | WP_001233083.1 | hypothetical protein | VF |
| DBQ99_RS20605 () | 3741715..3745212 | - | 3498 | WP_108084474.1 | host specificity protein J | - |
| DBQ99_RS20610 () | 3745273..3745905 | - | 633 | WP_000090917.1 | tail assembly protein | - |
| DBQ99_RS20615 () | 3745842..3746585 | - | 744 | WP_045154394.1 | C40 family peptidase | - |
| DBQ99_RS20620 () | 3746591..3747289 | - | 699 | WP_001152639.1 | phage minor tail protein L | - |
| DBQ99_RS20625 () | 3747289..3747618 | - | 330 | WP_000847379.1 | phage tail protein | - |
| DBQ99_RS20630 () | 3747615..3750194 | - | 2580 | WP_021548553.1 | phage tail tape measure protein | - |
| DBQ99_RS20635 () | 3750187..3750621 | - | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| DBQ99_RS20640 () | 3750603..3751025 | - | 423 | WP_021548554.1 | phage minor tail protein G | - |
| DBQ99_RS20645 () | 3751041..3751781 | - | 741 | WP_021548555.1 | phage tail protein | - |
| DBQ99_RS20650 () | 3751789..3752184 | - | 396 | WP_021548556.1 | phage minor tail U family protein | - |
| DBQ99_RS20655 () | 3752181..3752759 | - | 579 | WP_001518407.1 | phage tail protein | - |
| DBQ99_RS20660 () | 3752771..3753124 | - | 354 | WP_029395143.1 | head-tail joining protein | - |
| DBQ99_RS20665 () | 3753136..3753531 | - | 396 | WP_001468354.1 | DNA-packaging protein FI | - |
| DBQ99_RS20670 () | 3753573..3754598 | - | 1026 | WP_029395141.1 | major capsid protein | - |
| DBQ99_RS20675 () | 3754654..3754986 | - | 333 | WP_012304872.1 | head decoration protein | - |
| DBQ99_RS20680 () | 3754996..3756315 | - | 1320 | WP_029395138.1 | S49 family peptidase | - |
| DBQ99_RS20685 () | 3756296..3757897 | - | 1602 | WP_057077926.1 | phage portal protein | - |
| DBQ99_RS20690 () | 3757894..3758100 | - | 207 | WP_000198149.1 | gpW family protein | - |
| DBQ99_RS20695 () | 3758097..3760022 | - | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| DBQ99_RS20700 () | 3759997..3760542 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| DBQ99_RS20710 () | 3760931..3761164 | + | 234 | WP_001663509.1 | YlcI/YnfO family protein | - |
| DBQ99_RS20715 () | 3761221..3761631 | + | 411 | WP_000079508.1 | DUF1398 family protein | - |
| DBQ99_RS20725 () | 3761982..3762134 | - | 153 | WP_001139678.1 | hypothetical protein | - |
| DBQ99_RS20730 () | 3762122..3762559 | - | 438 | WP_001446997.1 | lysis protein | - |
| DBQ99_RS20735 () | 3762556..3763032 | - | 477 | WP_060581801.1 | glycoside hydrolase family protein | - |
| DBQ99_RS20740 () | 3763036..3763362 | - | 327 | WP_001120496.1 | phage holin, lambda family | - |
| DBQ99_RS20745 () | 3763763..3764512 | + | 750 | WP_000907077.1 | TIGR04255 family protein | - |
| DBQ99_RS26250 () | 3764528..3764872 | + | 345 | WP_125282403.1 | hypothetical protein | - |
| DBQ99_RS20750 () | 3764876..3765490 | + | 615 | WP_000069422.1 | hypothetical protein | - |
| DBQ99_RS20755 () | 3765516..3765860 | - | 345 | WP_001205456.1 | antitermination protein Q | - |
| DBQ99_RS20760 () | 3765879..3766868 | - | 990 | WP_001433852.1 | DUF968 domain-containing protein | - |
| DBQ99_RS20765 () | 3766876..3767673 | - | 798 | WP_060581690.1 | KilA-N domain-containing protein | - |
| DBQ99_RS20770 () | 3767693..3768082 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DBQ99_RS20775 () | 3768079..3768405 | - | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| DBQ99_RS20780 () | 3768402..3769055 | - | 654 | WP_060581688.1 | phage N-6-adenine-methyltransferase | - |
| DBQ99_RS20785 () | 3769055..3769549 | - | 495 | WP_072199996.1 | PerC family transcriptional regulator | - |
| DBQ99_RS20790 () | 3769546..3770487 | - | 942 | WP_000104977.1 | helix-turn-helix domain-containing protein | - |
| DBQ99_RS20795 () | 3770477..3770656 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| DBQ99_RS20800 () | 3770832..3771383 | - | 552 | WP_001434539.1 | hypothetical protein | - |
| DBQ99_RS20805 () | 3771421..3771621 | - | 201 | WP_000205494.1 | cell division protein | - |
| DBQ99_RS20810 () | 3771719..3772345 | + | 627 | WP_000450735.1 | LexA family transcriptional regulator | - |
| DBQ99_RS20815 () | 3772573..3773088 | - | 516 | WP_000559916.1 | hypothetical protein | - |
| DBQ99_RS26255 () | 3773233..3773544 | + | 312 | Protein_3594 | hypothetical protein | - |
| DBQ99_RS20825 () | 3773559..3773921 | + | 363 | WP_000135682.1 | hypothetical protein | - |
| DBQ99_RS20830 () | 3773987..3774811 | + | 825 | WP_057077927.1 | DUF2303 family protein | - |
| DBQ99_RS20835 () | 3774939..3775475 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| DBQ99_RS20840 () | 3775466..3775828 | + | 363 | WP_001242749.1 | phage protein | - |
| DBQ99_RS20845 () | 3775828..3776133 | + | 306 | WP_000206734.1 | hypothetical protein | - |
| DBQ99_RS20855 () | 3776360..3777523 | + | 1164 | WP_057077906.1 | hypothetical protein ; Integrase | Integrase |
| DBQ99_RS20865 () | 3777728..3778981 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| DBQ99_RS20870 () | 3778993..3780096 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| DBQ99_RS20875 () | 3780384..3781439 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| DBQ99_RS20880 () | 3781478..3781879 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| DBQ99_RS20885 () | 3781937..3783181 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 3782597..3782677 | - | 81 | NuclAT_12 | - | - |
| - () | 3782597..3782677 | - | 81 | NuclAT_12 | - | - |
| - () | 3782597..3782677 | - | 81 | NuclAT_12 | - | - |
| - () | 3782597..3782677 | - | 81 | NuclAT_12 | - | - |
| DBQ99_RS20890 () | 3783273..3783731 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| DBQ99_RS20895 () | 3783992..3785449 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| DBQ99_RS20900 () | 3785506..3786027 | - | 522 | Protein_3608 | peptide chain release factor H | - |
| DBQ99_RS20905 () | 3786023..3786229 | - | 207 | Protein_3609 | RtcB family protein | - |
| DBQ99_RS20915 () | 3786547..3786999 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| DBQ99_RS20920 () | 3787009..3787407 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| DBQ99_RS20925 () | 3787410..3787703 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| DBQ99_RS20930 () | 3787755..3788810 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| DBQ99_RS20935 () | 3788881..3789666 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| DBQ99_RS20940 () | 3789638..3791350 | + | 1713 | Protein_3615 | hypothetical protein | VF |
| DBQ99_RS20945 () | 3791574..3792071 | - | 498 | WP_060581685.1 | REP-associated tyrosine transposase RayT | - |
| DBQ99_RS20950 () | 3792247..3792996 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| DBQ99_RS20955 () | 3793206..3793466 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| DBQ99_RS20960 () | 3793469..3793747 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| DBQ99_RS20965 () | 3793903..3794643 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| DBQ99_RS20970 () | 3794614..3795381 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| DBQ99_RS20975 () | 3795587..3796165 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| DBQ99_RS20980 () | 3796405..3798849 | + | 2445 | WP_000973083.1 | hypothetical protein | VF |
| DBQ99_RS20985 () | 3798892..3799338 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| DBQ99_RS20990 () | 3799519..3800289 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| DBQ99_RS20995 () | 3800330..3801466 | - | 1137 | WP_000420818.1 | ISAs1 family transposase ISEc1 | Transposase |
| DBQ99_RS21000 () | 3801897..3802289 | - | 393 | WP_001101839.1 | hypothetical protein | - |
| DBQ99_RS21005 () | 3802267..3806499 | - | 4233 | WP_000508724.1 | hypothetical protein | VF |
| DBQ99_RS21010 () | 3806575..3808716 | - | 2142 | WP_032329316.1 | hypothetical protein | VF |
| DBQ99_RS21020 () | 3808926..3809444 | - | 519 | WP_001142958.1 | Hcp family type VI secretion system effector | - |
| DBQ99_RS21025 () | 3810139..3810639 | + | 501 | WP_000037397.1 | type VI secretion system contractile sheath small subunit | - |
| DBQ99_RS21030 () | 3810674..3810898 | + | 225 | WP_000123970.1 | hypothetical protein | - |
| DBQ99_RS21035 () | 3810949..3812424 | + | 1476 | WP_000056989.1 | type VI secretion system contractile sheath large subunit | - |
| DBQ99_RS21040 () | 3812431..3812844 | + | 414 | WP_000611744.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|