MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93933 bp
Accession: NZ_CP028200 Location: 1..93933 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 Replicon: plasmid pGMI14-001
Accession: NZ_CP028200 Location: 1..93933 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN018746 Replicon: plasmid pGMI14-001
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6650_RS24875 () | 241..552 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| C6650_RS24880 () | 567..929 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| C6650_RS24885 () | 971..1198 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| C6650_RS24890 () | 1292..1978 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| C6650_RS24895 () | 2171..2551 | - | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| C6650_RS24905 () | 2966..3436 | + | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| C6650_RS25615 () | 3747..4565 | - | 819 | Protein_7 | DUF945 domain-containing protein | - |
| C6650_RS25620 () | 4668..4826 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| C6650_RS24915 () | 5075..5812 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| C6650_RS24920 () | 5809..6243 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| C6650_RS24925 () | 6283..8280 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| C6650_RS24930 () | 8349..8591 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| C6650_RS24935 () | 8646..9164 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| C6650_RS25555 () | 9758..9919 | - | 162 | WP_153810625.1 | hypothetical protein | - |
| C6650_RS24955 () | 9883..10206 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| C6650_RS24960 () | 10442..10876 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| C6650_RS24965 () | 10943..11377 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| C6650_RS24975 () | 11873..12637 | - | 765 | WP_001246548.1 | membrane protein | - |
| C6650_RS24980 () | 12709..13122 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| C6650_RS24985 () | 13178..13399 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| C6650_RS24990 () | 13399..14079 | - | 681 | WP_000088645.1 | DNA methylase | - |
| C6650_RS25000 () | 14461..14817 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| C6650_RS25005 () | 14810..15280 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| C6650_RS25010 () | 15791..16213 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C6650_RS25015 () | 16213..17487 | + | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| C6650_RS25020 () | 17569..18543 | - | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| C6650_RS25025 () | 18543..19748 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| C6650_RS25030 () | 20163..21104 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| C6650_RS25035 () | 21136..21702 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| C6650_RS25040 () | 21759..22094 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| C6650_RS25045 () | 22278..22694 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| C6650_RS25050 () | 22780..23895 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| C6650_RS25055 () | 24154..24642 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| C6650_RS25065 () | 25297..26037 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| C6650_RS25070 () | 26244..26804 | + | 561 | WP_001240331.1 | recombinase family protein | - |
| C6650_RS25075 () | 26788..28452 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| C6650_RS25080 () | 28385..29410 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| C6650_RS25085 () | 29599..30636 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
| C6650_RS25090 () | 31245..32138 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| C6650_RS25095 () | 32312..32476 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| C6650_RS25100 () | 32650..33417 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| C6650_RS25625 () | 33380..33547 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| C6650_RS25105 () | 33599..35374 | + | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| C6650_RS25110 () | 35656..36381 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| C6650_RS25115 () | 36642..37292 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| C6650_RS25120 () | 37419..37843 | - | 425 | Protein_46 | IS200/IS605 family transposase | - |
| C6650_RS25125 () | 37900..38250 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| C6650_RS25130 () | 38317..38877 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| C6650_RS25560 () | 39033..39320 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| C6650_RS25135 () | 39597..40082 | - | 486 | WP_000905606.1 | membrane protein | - |
| C6650_RS25140 () | 40076..40585 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| C6650_RS25150 () | 40589..41302 | - | 714 | Protein_52 | EAL domain-containing protein | - |
| C6650_RS25155 () | 41311..42093 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| C6650_RS25160 () | 42128..42649 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| C6650_RS25165 () | 42646..42936 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| C6650_RS25170 () | 42938..43243 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C6650_RS25175 () | 43245..43463 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C6650_RS25180 () | 44139..44660 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| C6650_RS25190 () | 45144..45440 | + | 297 | WP_001687482.1 | hypothetical protein | - |
| C6650_RS25195 () | 45934..46923 | + | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| C6650_RS25200 () | 47182..47626 | - | 445 | Protein_61 | site-specific integrase | - |
| C6650_RS25205 () | 47795..48176 | - | 382 | Protein_62 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C6650_RS25215 () | 48895..49197 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| C6650_RS25220 () | 49472..49990 | + | 519 | WP_000748205.1 | major pilin PefA | - |
| C6650_RS25225 () | 50218..52626 | + | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| C6650_RS25230 () | 52619..53311 | + | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| C6650_RS25235 () | 53326..53883 | + | 558 | WP_010999940.1 | membrane protein | - |
| C6650_RS25240 () | 54136..55011 | + | 876 | WP_010999939.1 | membrane protein | - |
| C6650_RS25245 () | 55443..55655 | + | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| C6650_RS25250 () | 55640..55990 | + | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| C6650_RS25255 () | 56235..56888 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| C6650_RS25630 () | 56878..57024 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| C6650_RS25260 () | 57021..57920 | + | 900 | WP_010999938.1 | YjiK family protein | - |
| C6650_RS25265 () | 58010..58567 | + | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| C6650_RS25270 () | 58834..59592 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| C6650_RS25275 () | 59689..59910 | - | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| C6650_RS25285 () | 60770..61651 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| C6650_RS25290 () | 61632..61709 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| C6650_RS25295 () | 61959..62225 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| C6650_RS25305 () | 62404..62847 | - | 444 | WP_010999935.1 | phospholipase | - |
| C6650_RS25310 () | 63013..63168 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| C6650_RS25315 () | 63181..63465 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| C6650_RS25320 () | 63580..64143 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| C6650_RS25325 () | 64198..64938 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| C6650_RS25330 () | 64958..70216 | - | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| C6650_RS25335 () | 70298..70525 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C6650_RS25340 () | 70525..70923 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C6650_RS25345 () | 70932..73175 | - | 2244 | WP_000009320.1 | type IV conjugative transfer system coupling protein TraD | - |
| C6650_RS25350 () | 73552..74283 | - | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| C6650_RS25355 () | 74319..74813 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| C6650_RS25360 () | 74829..77651 | - | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C6650_RS25365 () | 77648..79030 | - | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| C6650_RS25370 () | 79020..79568 | - | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C6650_RS25375 () | 79555..79848 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C6650_RS25380 () | 80062..80811 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C6650_RS25385 () | 80823..81038 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| C6650_RS25390 () | 81049..82875 | - | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C6650_RS25395 () | 82872..83291 | - | 420 | WP_001229397.1 | HNH endonuclease | - |
| C6650_RS25400 () | 83328..83966 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C6650_RS25405 () | 83951..84259 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| C6650_RS25410 () | 84278..85270 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| C6650_RS25415 () | 85267..85899 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| C6650_RS25420 () | 85896..86282 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| C6650_RS25425 () | 86257..88905 | - | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| C6650_RS25430 () | 88921..89184 | - | 264 | WP_001239256.1 | hypothetical protein | - |
| C6650_RS25435 () | 89301..89768 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| C6650_RS25440 () | 89761..89982 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| C6650_RS25445 () | 90117..90632 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C6650_RS25450 () | 90629..90874 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| C6650_RS25455 () | 90852..91448 | - | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| C6650_RS25460 () | 91438..92859 | - | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| C6650_RS25465 () | 92859..93599 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|