MGE detailed information
MGE type: Conjugative plasmid MGE length: 119076 bp
Accession: NZ_CP028168 Location: 1..119076 Organism: Escherichia coli strain CFSAN064036 Replicon: plasmid pGMI17-004_1
Accession: NZ_CP028168 Location: 1..119076 Organism: Escherichia coli strain CFSAN064036 Replicon: plasmid pGMI17-004_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6668_RS25295 () | 1179..2474 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| C6668_RS25300 () | 2461..2913 | + | 453 | WP_001247336.1 | hypothetical protein | VF |
| C6668_RS25305 () | 2924..4477 | + | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| C6668_RS25310 () | 4490..5587 | + | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| C6668_RS25315 () | 5605..6219 | + | 615 | WP_000959785.1 | hypothetical protein | VF |
| C6668_RS25320 () | 6229..6789 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| C6668_RS25325 () | 6774..7430 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| C6668_RS25330 () | 7430..8518 | + | 1089 | Protein_8 | hypothetical protein | VF |
| C6668_RS25345 () | 9791..9946 | - | 156 | WP_001302705.1 | hypothetical protein | - |
| C6668_RS25350 () | 10074..11228 | + | 1155 | WP_001139957.1 | integrase | - |
| C6668_RS25355 () | 11379..12203 | + | 825 | WP_001238939.1 | hypothetical protein | - |
| C6668_RS25360 () | 12288..13490 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| C6668_RS25365 () | 13550..14134 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| C6668_RS25370 () | 14529..14987 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| C6668_RS25375 () | 14984..15802 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| C6668_RS25380 () | 15799..16947 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| C6668_RS25385 () | 16944..17234 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| C6668_RS25390 () | 17249..17800 | + | 552 | WP_000014583.1 | Phospholipase D | VF |
| C6668_RS25395 () | 17890..21657 | + | 3768 | WP_001141529.1 | DNA primase | - |
| C6668_RS25400 () | 21675..22022 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| C6668_RS25405 () | 22019..22711 | + | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| C6668_RS25410 () | 22722..23705 | + | 984 | WP_001191877.1 | hypothetical protein | VF |
| C6668_RS25415 () | 23708..24997 | + | 1290 | WP_001272005.1 | conjugal transfer protein TraO | - |
| C6668_RS25420 () | 24997..25701 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| C6668_RS25425 () | 25701..26228 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| C6668_RS25430 () | 26279..26683 | + | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| C6668_RS25435 () | 26747..26935 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| C6668_RS25440 () | 26919..27719 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| C6668_RS25445 () | 27809..30853 | + | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| C6668_RS25450 () | 30853..31467 | + | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| C6668_RS25455 () | 31434..32636 | + | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| C6668_RS25460 () | 32665..33249 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| C6668_RS25465 () | 33346..35508 | + | 2163 | WP_000698351.1 | DotA/TraY family protein | - |
| C6668_RS25470 () | 35573..36235 | + | 663 | WP_000653334.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6668_RS25475 () | 36307..36516 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| C6668_RS26450 () | 36908..37084 | + | 177 | WP_001054904.1 | hypothetical protein | - |
| C6668_RS25480 () | 37149..37445 | - | 297 | WP_001275298.1 | hypothetical protein | - |
| C6668_RS25485 () | 38068..38220 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - () | 38275..38332 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 38275..38332 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 38275..38332 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 38275..38332 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| C6668_RS25490 () | 38512..39720 | + | 1209 | WP_000121274.1 | IncI1-type conjugal transfer protein TrbA | - |
| C6668_RS25495 () | 39739..40809 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| C6668_RS25500 () | 40802..43093 | + | 2292 | WP_001289276.1 | hypothetical protein | - |
| C6668_RS25505 () | 43130..45829 | - | 2700 | WP_001354015.1 | Protein TraI | Relaxase |
| C6668_RS25510 () | 45840..46172 | - | 333 | WP_001281051.1 | hypothetical protein | - |
| C6668_RS25515 () | 46405..46740 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| C6668_RS25520 () | 46826..47674 | - | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| C6668_RS26455 () | 48023..48220 | + | 198 | WP_001161115.1 | hypothetical protein | - |
| C6668_RS25535 () | 48254..48505 | + | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| C6668_RS25540 () | 48536..48733 | - | 198 | WP_001348086.1 | hypothetical protein | - |
| C6668_RS25545 () | 48756..49694 | - | 939 | WP_000078704.1 | Recombination-promoting nuclease RpnA | VF |
| C6668_RS25550 () | 49759..50025 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| C6668_RS25555 () | 50119..50553 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| C6668_RS25570 () | 51282..51782 | - | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| C6668_RS25580 () | 52244..52840 | - | 597 | WP_107148162.1 | hypothetical protein | - |
| C6668_RS25585 () | 52837..53556 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| C6668_RS25590 () | 53553..53987 | - | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| C6668_RS25595 () | 54042..56000 | - | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| C6668_RS25600 () | 56059..56292 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| C6668_RS25605 () | 56350..56877 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| C6668_RS25615 () | 57261..57575 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| C6668_RS25625 () | 57646..57837 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| C6668_RS25630 () | 57834..58256 | - | 423 | WP_000271705.1 | DUF1380 family protein | - |
| C6668_RS25635 () | 58303..58605 | - | 303 | WP_014653258.1 | antirestriction protein | - |
| C6668_RS26460 () | 59146..59922 | - | 777 | WP_001005043.1 | hypothetical protein | - |
| C6668_RS25650 () | 59968..60402 | - | 435 | WP_000274500.1 | DUF1380 family protein | - |
| C6668_RS25655 () | 60416..60637 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| C6668_RS25660 () | 60638..61321 | - | 684 | WP_000086147.1 | DNA methylase | - |
| C6668_RS25665 () | 61397..61709 | - | 313 | Protein_67 | hypothetical protein | - |
| C6668_RS25670 () | 61706..62608 | - | 903 | WP_001348079.1 | DUF1281 domain-containing protein | - |
| C6668_RS25685 () | 63289..63681 | - | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| C6668_RS25690 () | 63685..64659 | - | 975 | WP_001217836.1 | hypothetical protein | - |
| C6668_RS26465 () | 64898..65272 | - | 375 | WP_000752652.1 | hypothetical protein | - |
| C6668_RS25700 () | 65272..65904 | - | 633 | WP_000312331.1 | ParA family protein | - |
| C6668_RS25705 () | 66488..67273 | - | 786 | WP_001164192.1 | site-specific integrase | - |
| C6668_RS25710 () | 67275..67688 | - | 414 | WP_000465034.1 | hypothetical protein | - |
| C6668_RS25715 () | 68257..68517 | + | 261 | WP_000343102.1 | hypothetical protein | - |
| C6668_RS25720 () | 68514..69104 | + | 591 | WP_000194561.1 | hypothetical protein | - |
| C6668_RS25725 () | 69122..69469 | - | 348 | WP_000142424.1 | hypothetical protein | - |
| C6668_RS25730 () | 69588..69935 | + | 348 | WP_107148163.1 | colicin transporter | - |
| C6668_RS25735 () | 69953..71833 | - | 1881 | WP_001283356.1 | colicin | - |
| C6668_RS25740 () | 72112..73458 | - | 1347 | WP_001132019.1 | hypothetical protein | - |
| C6668_RS25750 () | 73812..74414 | + | 603 | WP_000517689.1 | hypothetical protein | - |
| C6668_RS25755 () | 74470..74964 | + | 495 | WP_001442119.1 | hypothetical protein | - |
| C6668_RS26470 () | 74964..75230 | + | 267 | WP_000627831.1 | hypothetical protein | - |
| C6668_RS25770 () | 75707..76123 | - | 417 | WP_031610367.1 | hypothetical protein | - |
| C6668_RS25775 () | 76132..78810 | - | 2679 | Protein_85 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| C6668_RS25785 () | 78853..79557 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| C6668_RS25790 () | 79716..79997 | - | 282 | Protein_87 | IS91 family transposase ISPps1 | Transposase |
| C6668_RS25795 () | 80144..81004 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| C6668_RS25800 () | 81187..81525 | - | 339 | Protein_89 | Tn3 family transposase TnpR_Tn3 | Transposase |
| C6668_RS25805 () | 81589..82293 | + | 705 | WP_001067855.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| C6668_RS25815 () | 82425..83285 | + | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| C6668_RS25820 () | 83387..84910 | + | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| C6668_RS25825 () | 84900..85682 | + | 783 | WP_001163403.1 | IS21 family transposase IS1326 | Transposase |
| C6668_RS25830 () | 85858..86358 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| C6668_RS25840 () | 86486..87325 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| C6668_RS25845 () | 87319..87666 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| C6668_RS25850 () | 87830..88621 | - | 792 | WP_001206317.1 | Streptomycin 3''-adenylyltransferase | ARG |
| C6668_RS25855 () | 88714..89187 | - | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| C6668_RS25860 () | 89344..90462 | + | 1119 | WP_000845049.1 | IS91 family transposase ISAzo26 | Transposase |
| C6668_RS25865 () | 90434..91270 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| C6668_RS25870 () | 91270..92073 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| C6668_RS25875 () | 92134..92949 | - | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| C6668_RS25885 () | 93257..94108 | - | 852 | WP_000240536.1 | replication protein | - |
| C6668_RS25890 () | 94095..94814 | - | 720 | Protein_104 | AAA family ATPase | - |
| C6668_RS25900 () | 94864..95568 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C6668_RS25905 () | 95633..96883 | - | 1251 | Protein_106 | DDE-type integrase/transposase/recombinase | - |
| C6668_RS25915 () | 96958..97626 | - | 669 | WP_001300294.1 | putative signaling protein | VF |
| C6668_RS25920 () | 97662..97898 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| C6668_RS25925 () | 97895..98257 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| C6668_RS25930 () | 98275..99969 | - | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| C6668_RS25935 () | 100021..100443 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| C6668_RS25940 () | 100479..100754 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| C6668_RS25945 () | 100768..101118 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| C6668_RS25950 () | 101190..101624 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| C6668_RS25970 () | 102627..102869 | + | 243 | WP_000844627.1 | transposase | - |
| C6668_RS25975 () | 102901..103551 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| C6668_RS25980 () | 103657..104856 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| C6668_RS25985 () | 104888..105748 | - | 861 | WP_000493383.1 | EamA family transporter | - |
| C6668_RS25990 () | 105757..106371 | - | 615 | Protein_119 | helix-turn-helix domain-containing protein | - |
| C6668_RS26475 () | 106333..106491 | + | 159 | WP_197711125.1 | MerR family transcriptional regulator | - |
| C6668_RS25995 () | 106728..107576 | - | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| C6668_RS26000 () | 107616..107897 | - | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6668_RS26005 () | 107894..108163 | - | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| C6668_RS26020 () | 109072..110103 | - | 1032 | WP_000907875.1 | replication initiation protein | - |
| C6668_RS26035 () | 111076..111339 | + | 264 | WP_001324596.1 | ash family protein | - |
| C6668_RS26040 () | 111257..111544 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| C6668_RS26050 () | 111986..112519 | + | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| C6668_RS26060 () | 112773..113252 | + | 480 | Protein_128 | conjugal transfer protein TraC | - |
| C6668_RS26065 () | 113344..114572 | + | 1229 | WP_089541817.1 | IS3 family transposase IS2 | Transposase |
| C6668_RS26075 () | 114806..115372 | + | 567 | WP_000776428.1 | hypothetical protein | - |
| C6668_RS26080 () | 115640..115894 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| C6668_RS26085 () | 115937..116389 | + | 453 | WP_000008893.1 | hypothetical protein | - |
| C6668_RS26100 () | 117063..118129 | + | 1067 | Protein_133 | type IV pilus biogenesis lipoprotein PilL | - |
| C6668_RS26105 () | 118129..118566 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|