MGE detailed information
MGE type: Genomic_island MGE length: 22972 bp
Accession: NZ_CP027756 Location: 1780183..1803154 Organism: Pseudomonas synxantha strain R6-28-08 Replicon: chromosome
Accession: NZ_CP027756 Location: 1780183..1803154 Organism: Pseudomonas synxantha strain R6-28-08 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4K01_RS08205 () | 1775757..1776698 | - | 942 | WP_057022027.1 | folate-binding protein YgfZ | - |
| C4K01_RS08210 () | 1776838..1777092 | + | 255 | WP_043046387.1 | succinate dehydrogenase assembly factor 2 | - |
| C4K01_RS08215 () | 1777076..1777522 | + | 447 | WP_057022028.1 | hypothetical protein | - |
| C4K01_RS08220 () | 1777491..1779107 | - | 1617 | WP_043046390.1 | L-aspartate oxidase | - |
| C4K01_RS08225 () | 1779569..1780150 | + | 582 | WP_003172477.1 | RNA polymerase sigma factor RpoE | - |
| C4K01_RS08230 () | 1780183..1780770 | + | 588 | WP_046071417.1 | hypothetical protein | VF |
| C4K01_RS08235 () | 1780787..1781746 | + | 960 | WP_057022029.1 | hypothetical protein | VF |
| C4K01_RS08240 () | 1781982..1783418 | + | 1437 | WP_057011938.1 | hypothetical protein | VF |
| C4K01_RS08245 () | 1783485..1784918 | - | 1434 | WP_046071419.1 | M48 family metallopeptidase | - |
| C4K01_RS08250 () | 1785014..1785253 | + | 240 | WP_057011937.1 | sulfurtransferase TusA family protein | - |
| C4K01_RS08255 () | 1785273..1785746 | - | 474 | WP_043046400.1 | peroxiredoxin | - |
| C4K01_RS08260 () | 1785757..1786317 | - | 561 | WP_003189463.1 | glycine cleavage system protein R | - |
| C4K01_RS08265 () | 1786579..1787457 | + | 879 | WP_046071422.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| C4K01_RS08270 () | 1787475..1788590 | + | 1116 | WP_057022030.1 | outer membrane protein assembly factor BamC | - |
| C4K01_RS08275 () | 1788595..1789353 | + | 759 | WP_056847351.1 | MBL fold metallo-hydrolase | - |
| C4K01_RS08280 () | 1789381..1790094 | + | 714 | WP_057022031.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| C4K01_RS08290 () | 1790363..1790656 | - | 294 | WP_057022032.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4K01_RS08295 () | 1790646..1790885 | - | 240 | WP_014717442.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| C4K01_RS08305 () | 1791539..1791793 | + | 255 | WP_057022033.1 | hypothetical protein | - |
| C4K01_RS08310 () | 1791868..1793094 | - | 1227 | WP_057022034.1 | MFS transporter | - |
| C4K01_RS08315 () | 1793334..1793621 | - | 288 | WP_057022035.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| C4K01_RS08320 () | 1793624..1793938 | - | 315 | WP_124356083.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4K01_RS08325 () | 1794044..1794985 | - | 942 | WP_057022037.1 | LysR family transcriptional regulator | - |
| C4K01_RS08330 () | 1795143..1796459 | + | 1317 | WP_057022038.1 | MHS family MFS transporter | - |
| C4K01_RS08335 () | 1796471..1797703 | + | 1233 | WP_057022039.1 | hypothetical protein | VF |
| C4K01_RS08340 () | 1797838..1798875 | + | 1038 | WP_057022040.1 | histone deacetylase family protein | - |
| C4K01_RS08345 () | 1798894..1799247 | - | 354 | WP_057022041.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C4K01_RS08350 () | 1799244..1799648 | - | 405 | WP_082636616.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| C4K01_RS08355 () | 1799859..1800761 | + | 903 | WP_043046437.1 | hypothetical protein | VF |
| C4K01_RS08360 () | 1800753..1801508 | - | 756 | WP_057022042.1 | substrate-binding domain-containing protein | - |
| C4K01_RS08365 () | 1801505..1802812 | - | 1308 | WP_043046441.1 | MFS transporter | - |
| C4K01_RS08375 () | 1803368..1804090 | + | 723 | WP_057022043.1 | GntR family transcriptional regulator | - |
| C4K01_RS08380 () | 1804087..1804875 | + | 789 | WP_057022044.1 | SDR family oxidoreductase | - |
| C4K01_RS08385 () | 1804943..1805875 | + | 933 | WP_057022045.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| C4K01_RS08390 () | 1805954..1806832 | + | 879 | WP_057022046.1 | SMP-30/gluconolactonase/LRE family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|