MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 155914 bp
Accession: NZ_CP027740 Location: 4146067..4301980 Organism: Pseudomonas chlororaphis subsp. piscium strain ChPhzS140 Replicon: chromosome
Accession: NZ_CP027740 Location: 4146067..4301980 Organism: Pseudomonas chlororaphis subsp. piscium strain ChPhzS140 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4K29_RS18475 () | 4141365..4142687 | - | 1323 | WP_124305019.1 | OprO/OprP family phosphate-selective porin | - |
| C4K29_RS18480 () | 4143005..4143892 | - | 888 | WP_164485767.1 | LysR family transcriptional regulator | - |
| C4K29_RS18485 () | 4143937..4144269 | - | 333 | WP_025810157.1 | DUF2790 domain-containing protein | - |
| C4K29_RS18490 () | 4144601..4145929 | + | 1329 | WP_053279739.1 | OprD family porin | - |
| C4K29_RS18495 () | 4146148..4147410 | - | 1263 | WP_063431684.1 | tetratricopeptide repeat protein | - |
| C4K29_RS18500 () | 4147483..4148670 | - | 1188 | WP_196762725.1 | Type I secretion system membrane fusion protein PrsE | VF |
| C4K29_RS18505 () | 4148720..4150876 | - | 2157 | WP_063431686.1 | type I secretion system permease/ATPase | - |
| C4K29_RS18510 () | 4150873..4152387 | - | 1515 | WP_063431688.1 | TolC family outer membrane protein | - |
| C4K29_RS18515 () | 4152647..4161355 | - | 8709 | WP_124303025.1 | BapA prefix-like domain-containing protein | - |
| C4K29_RS18520 () | 4161729..4162376 | - | 648 | WP_009043247.1 | Transcriptional regulatory protein RcsB | VF |
| C4K29_RS18525 () | 4162435..4165665 | - | 3231 | WP_063431725.1 | hybrid sensor histidine kinase/response regulator | - |
| C4K29_RS18530 () | 4165716..4166900 | - | 1185 | WP_063431727.1 | EAL domain-containing response regulator | - |
| C4K29_RS18535 () | 4166888..4169716 | - | 2829 | WP_063431729.1 | Sensor histidine kinase RcsC | VF |
| C4K29_RS18540 () | 4170212..4171723 | - | 1512 | WP_124305020.1 | hypothetical protein | - |
| C4K29_RS18545 () | 4171701..4172744 | - | 1044 | WP_124305021.1 | hypothetical protein | - |
| C4K29_RS18550 () | 4173048..4174073 | - | 1026 | WP_124305022.1 | hypothetical protein | - |
| C4K29_RS18555 () | 4174218..4175195 | + | 978 | WP_124304680.1 | IS5 family transposase ISPssy | Transposase |
| C4K29_RS18560 () | 4175430..4175846 | + | 417 | WP_124305023.1 | hypothetical protein | - |
| C4K29_RS18565 () | 4175941..4176918 | + | 978 | WP_124304680.1 | IS5 family transposase ISPssy | Transposase |
| C4K29_RS18570 () | 4177150..4177980 | - | 831 | Protein_3638 | IS3 family transposase | - |
| C4K29_RS18575 () | 4178009..4178593 | - | 585 | WP_124305024.1 | plasmid pRiA4b ORF-3 family protein | - |
| C4K29_RS18580 () | 4178597..4180102 | - | 1506 | WP_124305025.1 | IS66 family transposase ISPre3 | Transposase |
| C4K29_RS18585 () | 4180140..4180484 | - | 345 | WP_124305026.1 | IS66 family transposase ISPre3 | Transposase |
| C4K29_RS18590 () | 4180481..4180858 | - | 378 | WP_164485769.1 | transposase | - |
| C4K29_RS18595 () | 4180943..4181283 | - | 341 | Protein_3643 | IS3 family transposase ISPsy24 | Transposase |
| C4K29_RS18600 () | 4181349..4181485 | - | 137 | Protein_3644 | IS66 family insertion sequence element accessory protein TnpB | - |
| C4K29_RS18605 () | 4182027..4182893 | - | 867 | WP_124305028.1 | hypothetical protein | - |
| C4K29_RS18610 () | 4183015..4183464 | - | 450 | WP_124305029.1 | hypothetical protein | - |
| C4K29_RS18615 () | 4183466..4184164 | - | 699 | WP_206430659.1 | oxygen-regulated invasion protein OrgB | - |
| C4K29_RS18620 () | 4184136..4184708 | - | 573 | WP_124305030.1 | Oxygen-regulated invasion protein OrgA | VF |
| C4K29_RS18625 () | 4184692..4185420 | - | 729 | WP_124305031.1 | Lipoprotein PrgK | VF |
| C4K29_RS18630 () | 4185417..4185725 | - | 309 | WP_164485770.1 | hypothetical protein | VF |
| C4K29_RS18635 () | 4185793..4186056 | - | 264 | WP_124305032.1 | Protein PrgI | VF |
| C4K29_RS18640 () | 4186073..4187239 | - | 1167 | WP_206430660.1 | Protein PrgH | VF |
| C4K29_RS18645 () | 4187341..4187805 | - | 465 | WP_124305360.1 | transglycosylase SLT domain-containing protein | - |
| C4K29_RS18650 () | 4187951..4189462 | - | 1512 | WP_124305034.1 | winged helix-turn-helix domain-containing protein | - |
| C4K29_RS18655 () | 4189853..4191799 | - | 1947 | WP_164485771.1 | Ig-like domain repeat protein | - |
| C4K29_RS18660 () | 4191819..4192889 | - | 1071 | WP_164485772.1 | hypothetical protein | - |
| C4K29_RS18665 () | 4192912..4194003 | - | 1092 | WP_124305037.1 | hypothetical protein | - |
| C4K29_RS18670 () | 4194555..4194800 | + | 246 | WP_164485741.1 | IS5 family transposase ISPssy | Transposase |
| C4K29_RS32435 () | 4194713..4195048 | - | 336 | WP_206430671.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C4K29_RS18680 () | 4195200..4195454 | + | 255 | Protein_3660 | transposase | - |
| C4K29_RS18685 () | 4195862..4196107 | - | 246 | WP_124305038.1 | acyl carrier protein | - |
| C4K29_RS18690 () | 4196098..4197054 | - | 957 | WP_124305039.1 | hypothetical protein | - |
| C4K29_RS18695 () | 4197051..4197965 | - | 915 | WP_124305040.1 | hypothetical protein | - |
| C4K29_RS18700 () | 4198135..4199244 | - | 1110 | WP_124305041.1 | Cell invasion protein SipD | VF |
| C4K29_RS18705 () | 4199259..4200320 | - | 1062 | WP_124305042.1 | hypothetical protein | - |
| C4K29_RS18710 () | 4200347..4202101 | - | 1755 | WP_124305043.1 | Cell invasion protein SipB | VF |
| C4K29_RS18715 () | 4202101..4202598 | - | 498 | WP_124305044.1 | Chaperone protein SicA | VF |
| C4K29_RS18720 () | 4202736..4203767 | - | 1032 | WP_124305045.1 | Surface presentation of antigens protein SpaS | VF |
| C4K29_RS18725 () | 4203768..4204547 | - | 780 | WP_124305046.1 | Surface presentation of antigens protein SpaR | VF |
| C4K29_RS18730 () | 4204554..4204808 | - | 255 | WP_124305047.1 | hypothetical protein | VF |
| C4K29_RS18735 () | 4204819..4205481 | - | 663 | WP_124305048.1 | Surface presentation of antigens protein SpaP | VF |
| C4K29_RS18740 () | 4205474..4206382 | - | 909 | WP_124305049.1 | Surface presentation of antigens protein SpaO | VF |
| C4K29_RS18745 () | 4206379..4207407 | - | 1029 | WP_124305050.1 | hypothetical protein | - |
| C4K29_RS18750 () | 4207404..4207859 | - | 456 | WP_124305051.1 | hypothetical protein | - |
| C4K29_RS18755 () | 4207843..4209132 | - | 1290 | WP_124305052.1 | putative ATP synthase SpaL | VF |
| C4K29_RS18760 () | 4209129..4209536 | - | 408 | WP_124305053.1 | Surface presentation of antigens protein SpaK | VF |
| C4K29_RS18765 () | 4209548..4211608 | - | 2061 | WP_124305054.1 | Invasion protein InvA | VF |
| C4K29_RS18770 () | 4211629..4212729 | - | 1101 | WP_124305361.1 | Protein MxiC | VF |
| C4K29_RS18775 () | 4212731..4214395 | - | 1665 | WP_124305055.1 | Protein InvG | VF |
| C4K29_RS18780 () | 4214400..4215173 | - | 774 | WP_124305056.1 | Invasion protein InvF | VF |
| C4K29_RS18785 () | 4215624..4216601 | - | 978 | WP_124304680.1 | IS5 family transposase ISPssy | Transposase |
| C4K29_RS18790 () | 4217101..4217289 | - | 189 | WP_164485773.1 | transposase family protein | - |
| C4K29_RS32440 () | 4217816..4218205 | + | 390 | WP_206430661.1 | alpha/beta fold hydrolase | - |
| C4K29_RS32445 () | 4218186..4218680 | + | 495 | WP_206430675.1 | alpha/beta hydrolase | - |
| C4K29_RS18800 () | 4218882..4219301 | + | 420 | WP_124305058.1 | Virulence factors putative positive transcription regulator BvgA | VF |
| C4K29_RS18805 () | 4219366..4222968 | + | 3603 | WP_164485774.1 | Virulence sensor protein BvgS | VF |
| C4K29_RS18820 () | 4223424..4223540 | + | 117 | Protein_3687 | hypothetical protein | - |
| C4K29_RS18825 () | 4223568..4224013 | + | 446 | Protein_3688 | DDE-type integrase/transposase/recombinase | - |
| C4K29_RS18830 () | 4224146..4224358 | + | 213 | WP_124305060.1 | carbon storage regulator | - |
| C4K29_RS18835 () | 4224422..4224877 | + | 456 | Protein_3690 | integrase | - |
| C4K29_RS18840 () | 4224967..4225593 | - | 627 | WP_124305061.1 | response regulator transcription factor | - |
| C4K29_RS18845 () | 4226769..4227746 | - | 978 | WP_124304680.1 | IS5 family transposase ISPssy | Transposase |
| C4K29_RS18850 () | 4227806..4228429 | - | 624 | WP_164485775.1 | hypothetical protein | VF |
| C4K29_RS18855 () | 4228647..4229189 | - | 543 | WP_124305063.1 | putative fimbrial-like protein YfcP | VF |
| C4K29_RS18860 () | 4229205..4229699 | - | 495 | WP_124305064.1 | putative fimbrial-like protein YfcQ | VF |
| C4K29_RS18865 () | 4229714..4230214 | - | 501 | WP_124305065.1 | fimbrial protein | - |
| C4K29_RS18870 () | 4230224..4230769 | - | 546 | WP_206430672.1 | fimbrial protein | - |
| C4K29_RS18875 () | 4230901..4231653 | - | 753 | WP_124305067.1 | putative fimbrial chaperone YfcS | VF |
| C4K29_RS18880 () | 4231745..4234261 | - | 2517 | WP_124305068.1 | Outer membrane usher protein PapC | VF |
| C4K29_RS18885 () | 4234360..4234869 | - | 510 | WP_206430662.1 | type 1 fimbrial protein | - |
| C4K29_RS18890 () | 4234977..4235504 | - | 528 | WP_124305070.1 | type 1 fimbrial protein | - |
| C4K29_RS18895 () | 4235803..4236063 | + | 261 | Protein_3702 | transposase | - |
| C4K29_RS18900 () | 4236563..4237048 | - | 486 | WP_124305071.1 | hypothetical protein | - |
| C4K29_RS18905 () | 4237106..4238008 | + | 903 | Protein_3704 | IS5 family transposase ISPa41 | Transposase |
| C4K29_RS18910 () | 4238466..4239347 | + | 882 | WP_124305072.1 | hypothetical protein | - |
| C4K29_RS18915 () | 4239728..4240339 | + | 612 | WP_124305073.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| C4K29_RS18930 () | 4240661..4241416 | - | 756 | WP_124305074.1 | IS21 family transposase ISPsy41 | Transposase |
| C4K29_RS18935 () | 4241436..4242949 | - | 1514 | Protein_3708 | IS21 family transposase ISPsy41 | Transposase |
| C4K29_RS18940 () | 4243044..4243469 | + | 426 | WP_124305075.1 | EAL domain-containing protein | - |
| C4K29_RS18945 () | 4243529..4244616 | - | 1088 | Protein_3710 | IS630 family transposase ISPpu2 | Transposase |
| C4K29_RS18950 () | 4244979..4245956 | - | 978 | WP_124304680.1 | IS5 family transposase ISPssy | Transposase |
| C4K29_RS32450 () | 4246217..4246366 | - | 150 | Protein_3712 | IS5/IS1182 family transposase | - |
| C4K29_RS18960 () | 4246375..4246923 | - | 549 | Protein_3713 | transposase | - |
| C4K29_RS18965 () | 4247015..4247437 | + | 423 | WP_124305076.1 | hypothetical protein | - |
| C4K29_RS18970 () | 4247870..4248880 | - | 1011 | WP_164485777.1 | DUF418 domain-containing protein | - |
| C4K29_RS18975 () | 4249361..4250251 | + | 891 | WP_124305078.1 | HTH-type transcriptional regulator BenM | VF |
| C4K29_RS18980 () | 4250742..4250954 | + | 213 | WP_124305362.1 | AlpA family transcriptional regulator | - |
| C4K29_RS18985 () | 4250966..4251631 | + | 666 | WP_124305079.1 | Sporulation initiation inhibitor protein Soj | VF |
| C4K29_RS18990 () | 4251621..4252928 | + | 1308 | Protein_3719 | RHS repeat protein | - |
| C4K29_RS18995 () | 4253970..4254290 | + | 321 | WP_124305080.1 | hypothetical protein | - |
| C4K29_RS19005 () | 4255406..4255699 | + | 294 | WP_124305082.1 | hypothetical protein | - |
| C4K29_RS19010 () | 4255938..4256288 | + | 351 | WP_124305083.1 | DUF3085 domain-containing protein | - |
| C4K29_RS19015 () | 4256355..4256642 | - | 288 | WP_124305084.1 | helix-turn-helix transcriptional regulator | - |
| C4K29_RS19020 () | 4256891..4257325 | + | 435 | WP_124305085.1 | hypothetical protein | - |
| C4K29_RS19025 () | 4257629..4258363 | + | 735 | WP_124305086.1 | hypothetical protein | - |
| C4K29_RS19030 () | 4258477..4258692 | + | 216 | WP_124305087.1 | AlpA family transcriptional regulator | - |
| C4K29_RS19035 () | 4258705..4259556 | + | 852 | WP_124305088.1 | Chromosome partitioning protein ParA | VF |
| C4K29_RS19040 () | 4259546..4259749 | + | 204 | WP_124305089.1 | type II toxin-antitoxin system HicA family toxin | - |
| C4K29_RS19045 () | 4259742..4261058 | + | 1317 | WP_124305090.1 | ParB N-terminal domain-containing protein | - |
| C4K29_RS19050 () | 4261058..4261618 | + | 561 | WP_124305091.1 | DUF2857 domain-containing protein | - |
| C4K29_RS19055 () | 4261622..4262761 | + | 1140 | WP_124305092.1 | hypothetical protein | - |
| C4K29_RS19060 () | 4262939..4263700 | + | 762 | WP_124305093.1 | TIGR03761 family integrating conjugative element protein | - |
| C4K29_RS19065 () | 4263688..4264155 | + | 468 | WP_124305094.1 | DUF3158 family protein | - |
| C4K29_RS19070 () | 4264152..4264553 | + | 402 | WP_124305095.1 | single-stranded DNA-binding protein | - |
| C4K29_RS19075 () | 4264591..4264881 | - | 291 | WP_124305096.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4K29_RS19080 () | 4264874..4265119 | - | 246 | WP_124305097.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| C4K29_RS19085 () | 4266349..4266651 | + | 303 | WP_124305098.1 | hypothetical protein | - |
| C4K29_RS19090 () | 4266824..4267543 | + | 720 | WP_124305099.1 | ABC transporter substrate-binding protein | - |
| C4K29_RS19095 () | 4267882..4268355 | + | 474 | WP_124305100.1 | DUF3577 domain-containing protein | - |
| C4K29_RS19100 () | 4268416..4268724 | + | 309 | WP_124305101.1 | hypothetical protein | - |
| C4K29_RS19105 () | 4268772..4269413 | - | 642 | WP_124305102.1 | glycoside hydrolase family 25 protein | - |
| C4K29_RS19110 () | 4269565..4270056 | + | 492 | WP_164485778.1 | hypothetical protein | VF |
| C4K29_RS19115 () | 4270062..4270673 | + | 612 | WP_124305104.1 | hypothetical protein | - |
| C4K29_RS19120 () | 4270677..4271423 | + | 747 | WP_124305105.1 | TIGR03759 family integrating conjugative element protein | - |
| C4K29_RS19125 () | 4271420..4271974 | + | 555 | WP_206430673.1 | hypothetical protein | VF |
| C4K29_RS19130 () | 4271971..4272387 | + | 417 | WP_124305107.1 | integrating conjugative element protein | - |
| C4K29_RS19135 () | 4272389..4274452 | + | 2064 | WP_124305108.1 | type IV conjugative transfer system coupling protein TraD | - |
| C4K29_RS19140 () | 4274445..4275188 | + | 744 | WP_124305109.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| C4K29_RS19145 () | 4275379..4276314 | - | 936 | WP_124305110.1 | HTH-type transcriptional regulator CatM | VF |
| C4K29_RS19150 () | 4276554..4277735 | + | 1182 | WP_124305111.1 | acyl-CoA dehydrogenase | - |
| C4K29_RS19155 () | 4277729..4278397 | + | 669 | WP_124305112.1 | N-acetyltransferase | - |
| C4K29_RS19160 () | 4278394..4278810 | + | 417 | WP_122306886.1 | NUDIX domain-containing protein | - |
| C4K29_RS19165 () | 4278813..4279415 | + | 603 | WP_124305113.1 | HAD-IA family hydrolase | - |
| C4K29_RS19170 () | 4279520..4280833 | + | 1314 | WP_164485779.1 | MFS transporter | - |
| C4K29_RS19175 () | 4280969..4281319 | + | 351 | WP_124305115.1 | raqprd family integrative conjugative element protein | - |
| C4K29_RS19180 () | 4281306..4281545 | + | 240 | WP_124305116.1 | TIGR03758 family integrating conjugative element protein | - |
| C4K29_RS19185 () | 4281557..4281922 | + | 366 | WP_124305117.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| C4K29_RS19190 () | 4281932..4282324 | + | 393 | WP_124305118.1 | TIGR03750 family conjugal transfer protein | - |
| C4K29_RS19195 () | 4282321..4282980 | + | 660 | WP_124305119.1 | TIGR03746 family integrating conjugative element protein | - |
| C4K29_RS19200 () | 4282977..4283816 | + | 840 | WP_124305120.1 | TIGR03749 family integrating conjugative element protein | - |
| C4K29_RS19205 () | 4283806..4285188 | + | 1383 | WP_124305121.1 | TIGR03752 family integrating conjugative element protein | - |
| C4K29_RS19210 () | 4285169..4285579 | + | 411 | WP_124305122.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| C4K29_RS19215 () | 4285579..4288407 | + | 2829 | WP_124305123.1 | conjugative transfer ATPase | - |
| C4K29_RS19220 () | 4288472..4288783 | + | 312 | WP_124305124.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| C4K29_RS19225 () | 4288780..4289082 | + | 303 | WP_124305125.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4K29_RS19230 () | 4289256..4292165 | + | 2910 | WP_124305126.1 | ATP-binding protein | - |
| C4K29_RS19235 () | 4292470..4292982 | + | 513 | WP_124305127.1 | DNA repair protein RadC | - |
| C4K29_RS19240 () | 4293042..4293299 | + | 258 | WP_124305363.1 | DUF1778 domain-containing protein | - |
| C4K29_RS19245 () | 4293588..4293887 | + | 300 | WP_094991432.1 | hypothetical protein | - |
| C4K29_RS19250 () | 4294021..4294953 | + | 933 | WP_124305128.1 | TIGR03756 family integrating conjugative element protein | - |
| C4K29_RS19255 () | 4294957..4296312 | + | 1356 | WP_124305129.1 | integrating conjugative element protein | - |
| C4K29_RS19260 () | 4296314..4296655 | + | 342 | WP_124305130.1 | hypothetical protein | - |
| C4K29_RS19265 () | 4296652..4298160 | + | 1509 | WP_124305131.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| C4K29_RS19270 () | 4298161..4298511 | - | 351 | WP_124305132.1 | DUF3742 family protein | - |
| C4K29_RS19275 () | 4298732..4300420 | + | 1689 | WP_124305133.1 | helicase/relaxase domain-containing protein | - |
| C4K29_RS19280 () | 4300383..4301729 | - | 1347 | WP_124305134.1 | Prophage integrase IntS ; Integrase | Integrase |
| C4K29_RS19290 () | 4302099..4302659 | - | 561 | WP_007924430.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| C4K29_RS19295 () | 4303022..4303987 | + | 966 | Protein_3778 | hypothetical protein | - |
| C4K29_RS19300 () | 4303968..4304387 | + | 420 | WP_063431731.1 | hypothetical protein | - |
| C4K29_RS19305 () | 4304396..4306219 | - | 1824 | WP_063431734.1 | excinuclease ABC subunit UvrC | - |
| C4K29_RS19310 () | 4306222..4306863 | - | 642 | WP_025810114.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|