MGE detailed information
MGE type: Conjugative plasmid MGE length: 118822 bp
Accession: NZ_CP027581 Location: 1..118822 Organism: Escherichia coli strain 2013C-4282 Replicon: plasmid unnamed2
Accession: NZ_CP027581 Location: 1..118822 Organism: Escherichia coli strain 2013C-4282 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6996_RS25720 () | 350..907 | + | 558 | WP_024213676.1 | fertility inhibition protein FinO | - |
| C6996_RS25730 () | 2003..2464 | + | 462 | WP_000760084.1 | thermonuclease family protein | - |
| - () | 3124..3180 | - | 57 | NuclAT_1 | - | - |
| - () | 3124..3180 | - | 57 | NuclAT_1 | - | - |
| - () | 3124..3180 | - | 57 | NuclAT_1 | - | - |
| - () | 3124..3180 | - | 57 | NuclAT_1 | - | - |
| C6996_RS25745 () | 3228..3377 | + | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6996_RS25750 () | 3661..3918 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| C6996_RS25760 () | 4153..4227 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C6996_RS25765 () | 4220..5077 | + | 858 | WP_052892418.1 | incFII family plasmid replication initiator RepA | - |
| C6996_RS25780 () | 5780..6040 | + | 261 | WP_072127342.1 | hypothetical protein | - |
| C6996_RS25785 () | 6053..6292 | + | 240 | WP_001365702.1 | MarR family transcriptional regulator | - |
| C6996_RS25790 () | 6792..7948 | + | 1157 | WP_099205956.1 | IS3 family transposase ISSd1 | Transposase |
| C6996_RS25800 () | 7989..9305 | - | 1317 | WP_072127354.1 | Autotransporter adhesin UpaG | VF |
| C6996_RS25805 () | 9321..9602 | - | 282 | WP_077814914.1 | Major pilu subunit operon regulatory protein PapB | VF |
| C6996_RS25810 () | 10705..12261 | + | 1557 | WP_052892436.1 | L-lactate permease | - |
| C6996_RS25815 () | 12312..13031 | + | 720 | WP_001102093.1 | (Fe-S)-binding protein | - |
| C6996_RS25820 () | 13042..14457 | + | 1416 | WP_000054160.1 | iron-sulfur cluster-binding protein | - |
| C6996_RS25825 () | 14462..15160 | + | 699 | WP_000431492.1 | lactate utilization protein C | - |
| C6996_RS25830 () | 15201..15437 | - | 237 | WP_001369996.1 | hypothetical protein | - |
| C6996_RS25835 () | 15505..15969 | - | 465 | WP_077629759.1 | IS3 family transposase ISKpn8 | Transposase |
| C6996_RS25840 () | 16085..16396 | - | 312 | WP_000204186.1 | hypothetical protein | - |
| C6996_RS25845 () | 16424..16615 | - | 192 | WP_000264906.1 | hypothetical protein | - |
| C6996_RS25850 () | 16625..16990 | - | 366 | WP_000997727.1 | hypothetical protein | - |
| C6996_RS25860 () | 17124..17333 | + | 210 | WP_062896385.1 | hypothetical protein | - |
| C6996_RS25865 () | 17495..21397 | - | 3903 | WP_047091594.1 | Serine protease EspP | VF |
| C6996_RS25870 () | 21894..22280 | - | 387 | WP_052892435.1 | thermonuclease family protein | - |
| C6996_RS25875 () | 22439..23116 | + | 678 | WP_001158025.1 | hypothetical protein | - |
| C6996_RS25890 () | 23606..23926 | - | 321 | WP_000220092.1 | hypothetical protein | - |
| C6996_RS25895 () | 23984..25132 | - | 1149 | Protein_26 | IS3 family transposase | - |
| C6996_RS26795 () | 25215..25364 | - | 150 | WP_000539306.1 | hypothetical protein | - |
| C6996_RS25900 () | 25630..27234 | - | 1605 | WP_159032336.1 | Adhesin YadA | VF |
| C6996_RS26800 () | 27488..27577 | + | 90 | Protein_29 | transposase | - |
| C6996_RS25905 () | 27644..28792 | + | 1149 | Protein_30 | IS3 family transposase | - |
| C6996_RS25910 () | 29137..29316 | + | 180 | Protein_31 | integrase core domain-containing protein | - |
| C6996_RS25920 () | 29624..31711 | + | 2088 | WP_001223214.1 | bifunctional siderophore receptor/adhesin Iha | - |
| C6996_RS25925 () | 31972..32394 | - | 423 | WP_001212725.1 | Exc2 family lipoprotein | - |
| C6996_RS25930 () | 32682..33001 | + | 320 | Protein_34 | IS91 family transposase ISEc37 | Transposase |
| C6996_RS25935 () | 33027..34188 | - | 1162 | Protein_35 | IS3 family transposase ISEc17 | Transposase |
| C6996_RS25940 () | 34412..34574 | - | 163 | Protein_36 | IS91 family transposase | - |
| C6996_RS25945 () | 35292..35582 | + | 291 | WP_072127352.1 | Major pilu subunit operon regulatory protein PapB | VF |
| C6996_RS25950 () | 35595..39935 | + | 4341 | WP_052892434.1 | Autotransporter adhesin SadA | VF |
| C6996_RS25955 () | 39960..40763 | + | 804 | WP_052892433.1 | Outer membrane protein A | VF |
| C6996_RS25965 () | 41191..41706 | + | 516 | WP_001365635.1 | RTX-I toxin-activating lysine-acyltransferase ApxIC | VF |
| C6996_RS25970 () | 41708..44704 | + | 2997 | WP_032489272.1 | Hemolysin, chromosomal | VF |
| C6996_RS25975 () | 44754..46874 | + | 2121 | WP_072094473.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| C6996_RS25980 () | 46878..48317 | + | 1440 | WP_001213534.1 | Hemolysin secretion protein D, chromosomal | VF |
| C6996_RS25985 () | 48438..48932 | + | 495 | WP_024213727.1 | Transcriptional repressor MprA | VF |
| C6996_RS25995 () | 49062..49292 | + | 231 | WP_072127350.1 | serine/threonine protein kinase | - |
| C6996_RS26000 () | 49449..50675 | + | 1227 | Protein_46 | ISL3 family transposase | - |
| C6996_RS26805 () | 50729..51439 | + | 711 | Protein_47 | tyrosine-type recombinase/integrase | - |
| C6996_RS26015 () | 51724..52701 | - | 978 | WP_011310114.1 | RepB family plasmid replication initiator protein | - |
| C6996_RS26030 () | 53485..53595 | + | 111 | Protein_49 | IS481 family transposase | - |
| C6996_RS26040 () | 53867..54598 | + | 732 | WP_000850414.1 | complement resistance protein TraT | - |
| C6996_RS26045 () | 54658..55029 | + | 372 | WP_052892432.1 | colicin | - |
| C6996_RS26055 () | 55512..55859 | + | 348 | WP_000142427.1 | hypothetical protein | - |
| C6996_RS26060 () | 55877..56467 | - | 591 | WP_052892431.1 | hypothetical protein | - |
| C6996_RS26065 () | 56464..56712 | - | 249 | WP_052892430.1 | hypothetical protein | - |
| C6996_RS26070 () | 57308..57526 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C6996_RS26075 () | 57528..57833 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C6996_RS26080 () | 57834..58643 | + | 810 | WP_052892429.1 | site-specific integrase | - |
| C6996_RS26085 () | 58781..59056 | - | 276 | WP_000239527.1 | hypothetical protein | - |
| C6996_RS26090 () | 59050..59694 | - | 645 | WP_000633912.1 | AAA family ATPase | - |
| C6996_RS26095 () | 59923..60894 | + | 972 | WP_001103695.1 | hypothetical protein | - |
| C6996_RS26100 () | 60899..61291 | + | 393 | WP_000340836.1 | plasmid partitioning/stability family protein | - |
| C6996_RS26110 () | 61296..62566 | - | 1271 | Protein_62 | translesion error-prone DNA polymerase V subunit UmuC | - |
| C6996_RS26115 () | 62566..63003 | - | 438 | WP_000109074.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C6996_RS26120 () | 63000..63248 | - | 249 | WP_000618108.1 | DinI-like family protein | - |
| C6996_RS26125 () | 63524..64426 | + | 903 | WP_077629773.1 | DUF1281 domain-containing protein | - |
| C6996_RS26130 () | 64423..64735 | + | 313 | Protein_66 | hypothetical protein | - |
| C6996_RS26135 () | 64965..66665 | - | 1701 | WP_000125552.1 | group II intron reverse transcriptase/maturase | - |
| C6996_RS26140 () | 67245..67898 | + | 654 | WP_000769464.1 | DNA methylase | - |
| C6996_RS26145 () | 67899..68120 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| C6996_RS26150 () | 68134..68568 | + | 435 | WP_000274419.1 | DUF1380 family protein | - |
| C6996_RS26810 () | 68613..69383 | + | 771 | WP_052892426.1 | hypothetical protein | - |
| C6996_RS26165 () | 69922..70224 | + | 303 | WP_001364029.1 | antirestriction protein | - |
| C6996_RS26170 () | 70271..70690 | + | 420 | WP_000271736.1 | DUF1380 family protein | - |
| C6996_RS26175 () | 70690..70881 | + | 192 | WP_052892425.1 | hypothetical protein | - |
| C6996_RS26180 () | 70860..71165 | - | 306 | WP_052892427.1 | hypothetical protein | - |
| C6996_RS26195 () | 71843..72073 | + | 231 | WP_000218649.1 | hypothetical protein | - |
| C6996_RS26200 () | 72125..73486 | + | 1362 | WP_024213835.1 | DUF3560 domain-containing protein | - |
| C6996_RS26205 () | 73531..74094 | + | 564 | WP_001385677.1 | class I SAM-dependent methyltransferase | - |
| C6996_RS26210 () | 74075..74431 | - | 357 | WP_077814912.1 | pilus protein | - |
| C6996_RS26230 () | 74914..75447 | + | 534 | WP_024213643.1 | single-stranded DNA-binding protein | - |
| C6996_RS26235 () | 75505..75738 | + | 234 | WP_021564200.1 | DUF905 family protein | - |
| C6996_RS26240 () | 75804..77762 | + | 1959 | WP_052892458.1 | ParB/RepB/Spo0J family partition protein | - |
| C6996_RS26245 () | 77817..78251 | + | 435 | WP_024213646.1 | conjugation system SOS inhibitor PsiB | - |
| C6996_RS26250 () | 78248..78967 | + | 720 | WP_001276237.1 | plasmid SOS inhibition protein A | - |
| C6996_RS26255 () | 78964..79278 | + | 315 | Protein_85 | theronine dehydrogenase | - |
| - () | 79227..79421 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 79227..79421 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 79227..79421 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 79227..79421 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 79230..79421 | - | 192 | - | - | Antitoxin Detail |
| C6996_RS26260 () | 79486..79647 | + | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C6996_RS26265 () | 79948..80245 | - | 298 | Protein_87 | hypothetical protein | - |
| C6996_RS26280 () | 80548..80850 | + | 303 | WP_024213649.1 | hypothetical protein | - |
| C6996_RS26290 () | 81006..81293 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| C6996_RS26295 () | 81412..82233 | + | 822 | WP_024213651.1 | DUF945 domain-containing protein | - |
| C6996_RS26300 () | 82529..83131 | - | 603 | WP_077221319.1 | hypothetical protein | VF |
| C6996_RS26305 () | 83452..83835 | + | 384 | WP_001585112.1 | relaxosome protein TraM | - |
| C6996_RS26310 () | 84029..84676 | + | 648 | WP_052892413.1 | transcriptional regulator TraJ family protein | - |
| C6996_RS26315 () | 84795..85022 | + | 228 | WP_000589554.1 | conjugal transfer relaxosome protein TraY | - |
| C6996_RS26320 () | 85057..85410 | + | 354 | WP_001098216.1 | type IV conjugative transfer system pilin TraA | - |
| C6996_RS26325 () | 85425..85736 | + | 312 | WP_000012108.1 | type IV conjugative transfer system protein TraL | - |
| C6996_RS26330 () | 85758..86324 | + | 567 | WP_000399759.1 | type IV conjugative transfer system protein TraE | - |
| C6996_RS26335 () | 86311..87039 | + | 729 | WP_001365587.1 | type-F conjugative transfer system secretin TraK | - |
| C6996_RS26340 () | 87039..88469 | + | 1431 | WP_000146622.1 | conjugal transfer protein TraB | - |
| C6996_RS26345 () | 88459..89046 | + | 588 | WP_000002895.1 | conjugal transfer protein TraP | - |
| C6996_RS26350 () | 89033..89353 | + | 321 | WP_024214338.1 | conjugal transfer protein TrbD | - |
| C6996_RS26355 () | 89346..89597 | + | 252 | WP_001038336.1 | conjugal transfer protein TrbG | - |
| C6996_RS26360 () | 89594..90109 | + | 516 | WP_024213657.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C6996_RS26365 () | 90244..90465 | + | 222 | WP_001278977.1 | conjugal transfer protein TraR | - |
| C6996_RS26370 () | 90458..90853 | + | 396 | WP_000549593.1 | hypothetical protein | - |
| C6996_RS26375 () | 90864..91337 | + | 474 | Protein_106 | hypothetical protein | - |
| C6996_RS26815 () | 91663..92010 | + | 348 | WP_000836684.1 | hypothetical protein | - |
| C6996_RS26390 () | 92135..94765 | + | 2631 | WP_024213658.1 | type IV secretion system protein TraC | - |
| C6996_RS26395 () | 94762..95148 | + | 387 | WP_000214090.1 | type-F conjugative transfer system protein TrbI | - |
| C6996_RS26400 () | 95145..95777 | + | 633 | WP_000877291.1 | type-F conjugative transfer system protein TraW | - |
| C6996_RS26405 () | 95774..96766 | + | 993 | WP_000817328.1 | conjugal transfer pilus assembly protein TraU | - |
| C6996_RS26410 () | 96793..97126 | + | 334 | Protein_112 | hypothetical protein | - |
| C6996_RS26415 () | 97355..97993 | + | 639 | WP_024213660.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C6996_RS26420 () | 97990..98370 | + | 381 | WP_024213661.1 | hypothetical protein | - |
| C6996_RS26425 () | 98680..100509 | + | 1830 | WP_038812163.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C6996_RS26430 () | 100523..100780 | + | 258 | WP_024213663.1 | conjugal transfer protein TrbE | - |
| C6996_RS26435 () | 100773..101516 | + | 744 | WP_024213664.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C6996_RS26440 () | 101530..101895 | + | 366 | WP_024213665.1 | hypothetical protein | - |
| C6996_RS26445 () | 101981..102427 | + | 447 | WP_077637625.1 | hypothetical protein | - |
| C6996_RS26450 () | 102493..102780 | + | 288 | WP_000335419.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C6996_RS26455 () | 102767..103312 | + | 546 | WP_001477377.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C6996_RS26460 () | 103242..103589 | + | 348 | WP_071531747.1 | P-type conjugative transfer protein TrbJ | - |
| C6996_RS26465 () | 103537..103962 | + | 426 | WP_071600111.1 | F-type conjugal transfer protein TrbF | - |
| C6996_RS26470 () | 103949..105322 | + | 1374 | WP_024213668.1 | conjugal transfer protein TraH | - |
| C6996_RS26475 () | 105319..108141 | + | 2823 | WP_024213669.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C6996_RS26480 () | 108157..108660 | + | 504 | WP_077637628.1 | surface exclusion protein | - |
| C6996_RS26485 () | 108692..109423 | + | 732 | WP_033800894.1 | complement resistance protein TraT | - |
| C6996_RS26490 () | 109627..110106 | + | 480 | WP_001473214.1 | hypothetical protein | - |
| C6996_RS26495 () | 110388..112649 | + | 2262 | WP_106907810.1 | type IV conjugative transfer system coupling protein TraD | - |
| C6996_RS26500 () | 112649..117919 | + | 5271 | Protein_130 | Multifunctional conjugation protein TraI | Relaxase |
| C6996_RS26505 () | 117939..118685 | + | 747 | WP_052892416.1 | type-F conjugative transfer system pilin acetylase TraX | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|