MGE detailed information
MGE type: Prophage MGE length: 56675 bp
Accession: NZ_CP027546 Location: 1522358..1579032 Organism: Escherichia coli strain 2013C-4187 Replicon: chromosome
Accession: NZ_CP027546 Location: 1522358..1579032 Organism: Escherichia coli strain 2013C-4187 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6993_RS08770 () | 1517772..1518269 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C6993_RS08775 () | 1518399..1519682 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| C6993_RS08780 () | 1519651..1522284 | + | 2634 | WP_001299674.1 | lipid-binding membrane homeostasis protein YebT | - |
| C6993_RS08785 () | 1522364..1523803 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6993_RS08790 () | 1523921..1524157 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6993_RS08795 () | 1524262..1524453 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6993_RS08800 () | 1524454..1525110 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6993_RS08805 () | 1525795..1526061 | + | 267 | Protein_1607 | hypothetical protein | - |
| C6993_RS30375 () | 1526065..1526715 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| C6993_RS08820 () | 1526940..1527815 | - | 876 | WP_000491545.1 | hypothetical protein | VF |
| C6993_RS08825 () | 1527956..1528225 | - | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6993_RS08830 () | 1528227..1529540 | - | 1314 | WP_106875077.1 | ISNCY family transposase KIS | Transposase |
| C6993_RS08835 () | 1529605..1530204 | - | 600 | WP_044722165.1 | hypothetical protein | VF |
| C6993_RS08840 () | 1530272..1533664 | - | 3393 | WP_106913828.1 | host specificity protein J | - |
| C6993_RS08850 () | 1533900..1534532 | - | 633 | WP_136865658.1 | tail assembly protein | - |
| C6993_RS08855 () | 1534478..1535221 | - | 744 | WP_032325227.1 | C40 family peptidase | - |
| C6993_RS08860 () | 1535232..1535930 | - | 699 | WP_001152185.1 | phage minor tail protein L | - |
| C6993_RS08865 () | 1535930..1536259 | - | 330 | WP_000847302.1 | phage tail protein | - |
| C6993_RS08870 () | 1536256..1538835 | - | 2580 | WP_106889282.1 | phage tail tape measure protein | - |
| C6993_RS08875 () | 1538816..1539229 | - | 414 | WP_000533431.1 | phage tail assembly protein T | - |
| C6993_RS08880 () | 1539256..1539687 | - | 432 | WP_000479086.1 | phage minor tail protein G | - |
| C6993_RS08885 () | 1539701..1540453 | - | 753 | WP_032325228.1 | phage tail protein | - |
| C6993_RS08890 () | 1540461..1540856 | - | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| C6993_RS08895 () | 1540853..1541431 | - | 579 | WP_000975096.1 | phage tail protein | - |
| C6993_RS08900 () | 1541443..1541796 | - | 354 | WP_000752994.1 | head-tail joining protein | - |
| C6993_RS08905 () | 1541808..1542203 | - | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| C6993_RS08910 () | 1542245..1543270 | - | 1026 | WP_000063258.1 | major capsid protein | - |
| C6993_RS08915 () | 1543326..1543658 | - | 333 | WP_001365129.1 | head decoration protein | - |
| C6993_RS08920 () | 1543668..1544987 | - | 1320 | WP_000123251.1 | S49 family peptidase | - |
| C6993_RS08925 () | 1544968..1546569 | - | 1602 | WP_001443752.1 | phage portal protein | - |
| C6993_RS08930 () | 1546566..1546772 | - | 207 | WP_000198153.1 | gpW family protein | - |
| C6993_RS08935 () | 1546769..1548694 | - | 1926 | Protein_1631 | phage terminase large subunit family protein | - |
| C6993_RS08940 () | 1548669..1549214 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| C6993_RS08950 () | 1549603..1549797 | + | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| C6993_RS08960 () | 1549985..1550602 | - | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| C6993_RS08965 () | 1550752..1551189 | - | 438 | WP_000092325.1 | lysis protein | - |
| C6993_RS08970 () | 1551186..1551683 | - | 498 | WP_000075132.1 | lysozyme RrrD | - |
| C6993_RS08975 () | 1551683..1551898 | - | 216 | WP_024164617.1 | class II holin family protein | - |
| C6993_RS08985 () | 1552337..1554187 | - | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| C6993_RS08990 () | 1554509..1554761 | - | 253 | Protein_1639 | DUF3927 family protein | - |
| C6993_RS08995 () | 1554758..1555120 | - | 363 | Protein_1640 | tellurite resistance TerB family protein | - |
| C6993_RS09000 () | 1555358..1556179 | - | 822 | WP_000762928.1 | antitermination protein | - |
| C6993_RS09005 () | 1556176..1556550 | - | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6993_RS09010 () | 1556563..1557612 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C6993_RS09015 () | 1557614..1557886 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| C6993_RS09020 () | 1558008..1558352 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C6993_RS09025 () | 1558472..1558627 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6993_RS09030 () | 1558918..1559475 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C6993_RS09035 () | 1559477..1559695 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C6993_RS09040 () | 1559823..1560134 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| C6993_RS09045 () | 1560127..1560354 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| C6993_RS09050 () | 1560351..1560632 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| C6993_RS09055 () | 1560665..1561426 | - | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| C6993_RS09060 () | 1561452..1562193 | - | 742 | Protein_1653 | ATP-binding protein | - |
| C6993_RS09065 () | 1562200..1563162 | - | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| C6993_RS09070 () | 1563185..1563610 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C6993_RS09075 () | 1563607..1563909 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| C6993_RS09080 () | 1564007..1564378 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| C6993_RS09085 () | 1564399..1564590 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C6993_RS09090 () | 1564592..1564870 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6993_RS09095 () | 1565157..1565309 | + | 153 | WP_001427316.1 | DUF1391 family protein | - |
| C6993_RS09100 () | 1565730..1565951 | + | 222 | WP_000560218.1 | killing protein KilR | - |
| C6993_RS09105 () | 1565945..1566121 | + | 177 | WP_000245534.1 | hypothetical protein | - |
| C6993_RS09110 () | 1566195..1566470 | + | 276 | WP_001307773.1 | hypothetical protein | - |
| C6993_RS09115 () | 1566569..1569220 | + | 2652 | WP_000105101.1 | exodeoxyribonuclease VIII | - |
| C6993_RS09120 () | 1569213..1570022 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| C6993_RS09125 () | 1570079..1570273 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C6993_RS09130 () | 1570266..1570454 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1570272..1570450 | - | 179 | NuclAT_1 | - | - |
| - () | 1570272..1570450 | - | 179 | NuclAT_1 | - | - |
| - () | 1570272..1570450 | - | 179 | NuclAT_1 | - | - |
| - () | 1570272..1570450 | - | 179 | NuclAT_1 | - | - |
| C6993_RS09135 () | 1570561..1570842 | + | 282 | WP_001443927.1 | excisionase | - |
| C6993_RS09140 () | 1570808..1571884 | + | 1077 | WP_001189091.1 | hypothetical protein ; Integrase | Integrase |
| - () | 1572015..1572249 | + | 235 | - | - | Antitoxin Detail |
| - () | 1572016..1572119 | - | 104 | - | - | Toxin Detail |
| C6993_RS09145 () | 1572277..1572618 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6993_RS09150 () | 1572631..1573503 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6993_RS09155 () | 1573507..1573881 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6993_RS09160 () | 1574020..1574250 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6993_RS09165 () | 1574352..1575008 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6993_RS09170 () | 1575032..1575694 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6993_RS09175 () | 1575691..1577751 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| C6993_RS09180 () | 1577960..1578619 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6993_RS09185 () | 1578946..1579302 | - | 357 | WP_001295500.1 | protein YebF | - |
| C6993_RS09190 () | 1579369..1579659 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6993_RS09195 () | 1579793..1580971 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6993_RS09200 () | 1581027..1581668 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6993_RS09205 () | 1581705..1583516 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|