MGE detailed information
MGE type: Prophage MGE length: 57854 bp
Accession: NZ_CP027361 Location: 4371193..4429046 Organism: Escherichia coli strain 2014C-4639 Replicon: chromosome
Accession: NZ_CP027361 Location: 4371193..4429046 Organism: Escherichia coli strain 2014C-4639 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR62_RS22190 () | 4367134..4368252 | - | 1119 | WP_001058323.1 | hydrogenase 1 small subunit | - |
| RR62_RS22200 () | 4368848..4368988 | - | 141 | Protein_4304 | tail fiber assembly protein | - |
| RR62_RS22205 () | 4369377..4370738 | + | 1362 | WP_000938122.1 | type III secretion system effector EspK | - |
| RR62_RS27350 () | 4370801..4371076 | + | 276 | WP_001443842.1 | hypothetical protein | - |
| RR62_RS22210 () | 4371193..4371462 | - | 270 | WP_001023483.1 | phage tail fiber C-terminal domain-containing protein | - |
| RR62_RS22215 () | 4371500..4373070 | - | 1571 | Protein_4308 | IS66 family transposase ISCro1 | Transposase |
| RR62_RS22220 () | 4373090..4373437 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| RR62_RS22225 () | 4373437..4374114 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| RR62_RS22230 () | 4374170..4374334 | + | 165 | Protein_4311 | excisionase family protein | - |
| RR62_RS22235 () | 4374369..4375388 | + | 1020 | Protein_4312 | IS91 family transposase ISTha3 | Transposase |
| RR62_RS22245 () | 4376650..4376916 | + | 267 | Protein_4314 | Putative defective protein IntQ ; Integrase | Integrase |
| RR62_RS22250 () | 4377094..4377336 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| RR62_RS22255 () | 4377707..4378720 | - | 1014 | WP_122993102.1 | hypothetical protein | VF |
| RR62_RS22260 () | 4379123..4379392 | - | 270 | WP_001023433.1 | phage tail fiber C-terminal domain-containing protein | - |
| RR62_RS22265 () | 4379394..4380707 | - | 1314 | WP_000279009.1 | ISNCY family transposase KIS | Transposase |
| RR62_RS22270 () | 4380772..4381395 | - | 624 | WP_001456919.1 | Attachment invasion locus protein | VF |
| RR62_RS22275 () | 4381464..4384938 | - | 3475 | Protein_4320 | host specificity protein J | - |
| RR62_RS22285 () | 4385184..4385765 | - | 582 | WP_249822158.1 | tail assembly protein | - |
| RR62_RS22290 () | 4385762..4386505 | - | 744 | WP_000194802.1 | C40 family peptidase | - |
| RR62_RS22295 () | 4386516..4387214 | - | 699 | WP_001357740.1 | phage minor tail protein L | - |
| RR62_RS22300 () | 4387214..4387543 | - | 330 | WP_000847298.1 | phage tail protein | - |
| RR62_RS22305 () | 4387540..4390151 | - | 2612 | Protein_4325 | phage tail tape measure protein | - |
| RR62_RS22310 () | 4390132..4390545 | - | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| RR62_RS22315 () | 4390572..4390994 | - | 423 | WP_000479045.1 | phage minor tail protein G | - |
| RR62_RS22320 () | 4391008..4391759 | - | 752 | Protein_4328 | Ig domain-containing protein | - |
| RR62_RS22325 () | 4391767..4392161 | - | 395 | Protein_4329 | phage minor tail U family protein | - |
| RR62_RS27355 () | 4392158..4392331 | - | 174 | WP_001473389.1 | phage tail protein | - |
| RR62_RS27360 () | 4392294..4392515 | - | 222 | WP_259393599.1 | phage tail protein | - |
| RR62_RS27365 () | 4392548..4392730 | - | 183 | WP_259393596.1 | phage tail protein | - |
| RR62_RS22335 () | 4392742..4393095 | - | 354 | WP_000752994.1 | head-tail joining protein | - |
| RR62_RS22340 () | 4393107..4393502 | - | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| RR62_RS22345 () | 4393544..4394569 | - | 1026 | WP_000063258.1 | major capsid protein | - |
| RR62_RS22350 () | 4394625..4394957 | - | 333 | WP_001365129.1 | head decoration protein | - |
| RR62_RS22355 () | 4394967..4396286 | - | 1320 | WP_000123251.1 | S49 family peptidase | - |
| RR62_RS22360 () | 4396267..4397868 | - | 1602 | WP_001443752.1 | phage portal protein | - |
| RR62_RS22365 () | 4397865..4398071 | - | 207 | WP_000198153.1 | gpW family protein | - |
| RR62_RS22370 () | 4398068..4399993 | - | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| RR62_RS22375 () | 4399968..4400513 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| RR62_RS22380 () | 4400902..4401096 | + | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| RR62_RS22385 () | 4401284..4401901 | - | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| RR62_RS22390 () | 4402051..4402488 | - | 438 | WP_000092325.1 | lysis protein | - |
| RR62_RS22395 () | 4402485..4402982 | - | 498 | WP_000075132.1 | lysozyme RrrD | - |
| RR62_RS22400 () | 4402982..4403197 | - | 216 | WP_024164617.1 | class II holin family protein | - |
| RR62_RS22405 () | 4403636..4405486 | - | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| RR62_RS22410 () | 4405893..4406060 | - | 168 | WP_000216636.1 | DUF3927 family protein | - |
| RR62_RS22415 () | 4406057..4406419 | - | 363 | Protein_4349 | tellurite resistance TerB family protein | - |
| RR62_RS22420 () | 4406657..4407478 | - | 822 | WP_000762928.1 | antitermination protein | - |
| RR62_RS22425 () | 4407475..4407849 | - | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RR62_RS22430 () | 4407862..4408911 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| RR62_RS22435 () | 4408913..4409185 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| RR62_RS22440 () | 4409307..4409651 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| RR62_RS22445 () | 4409771..4409926 | - | 156 | WP_000813258.1 | Hok/Gef family protein | - |
| RR62_RS22450 () | 4410217..4410774 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| RR62_RS22455 () | 4410776..4410994 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| RR62_RS22460 () | 4411122..4411433 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| RR62_RS22465 () | 4411426..4411653 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| RR62_RS22470 () | 4411650..4411931 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| RR62_RS22475 () | 4411964..4412725 | - | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| RR62_RS22480 () | 4412751..4413492 | - | 742 | Protein_4362 | ATP-binding protein | - |
| RR62_RS22485 () | 4413499..4414461 | - | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| RR62_RS22490 () | 4414484..4414909 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| RR62_RS22495 () | 4414906..4415208 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| RR62_RS22500 () | 4415306..4415677 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| RR62_RS22505 () | 4415698..4415889 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| RR62_RS22510 () | 4415891..4416169 | + | 279 | WP_001448501.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RR62_RS22515 () | 4416456..4416608 | + | 153 | WP_001427316.1 | DUF1391 family protein | - |
| RR62_RS22520 () | 4417029..4417250 | + | 222 | WP_000560218.1 | killing protein KilR | - |
| RR62_RS22525 () | 4417250..4417420 | + | 171 | WP_001427414.1 | YdaE family protein | - |
| RR62_RS22530 () | 4417494..4417769 | + | 276 | WP_001307773.1 | hypothetical protein | - |
| RR62_RS22535 () | 4417868..4420519 | + | 2652 | WP_000105101.1 | exodeoxyribonuclease VIII | - |
| RR62_RS22540 () | 4420512..4421321 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| RR62_RS22545 () | 4421378..4421572 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RR62_RS22550 () | 4421565..4421753 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 4421571..4421749 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 4421571..4421749 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 4421571..4421749 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 4421571..4421749 | - | 179 | NuclAT_1 | - | Antitoxin Detail |
| RR62_RS22555 () | 4421860..4422141 | + | 282 | WP_001443927.1 | excisionase | - |
| RR62_RS22560 () | 4422107..4423222 | + | 1116 | WP_001189089.1 | hypothetical protein ; Integrase | Integrase |
| - | 4423313..4423547 | + | 235 | - | - | Antitoxin Detail |
| - | 4423314..4423417 | - | 104 | - | - | Toxin Detail |
| RR62_RS22565 () | 4423575..4423916 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RR62_RS22570 () | 4423929..4424798 | - | 870 | WP_032341845.1 | copper homeostasis membrane protein CopD | - |
| RR62_RS22575 () | 4424802..4425176 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RR62_RS22580 () | 4425315..4425545 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RR62_RS22585 () | 4425647..4426303 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| RR62_RS22590 () | 4426327..4426989 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RR62_RS22595 () | 4426986..4429046 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| RR62_RS22600 () | 4429255..4429914 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| RR62_RS22605 () | 4430241..4430597 | - | 357 | WP_001295500.1 | protein YebF | - |
| RR62_RS22610 () | 4430664..4430954 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| RR62_RS22615 () | 4431088..4432266 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| RR62_RS22620 () | 4432322..4432963 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|