MGE detailed information
MGE type: Prophage MGE length: 59700 bp
Accession: NZ_CP027352 Location: 1340496..1400195 Organism: Escherichia coli strain 2012C-4606 Replicon: chromosome
Accession: NZ_CP027352 Location: 1340496..1400195 Organism: Escherichia coli strain 2012C-4606 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYN42_RS08035 () | 1335754..1337802 | - | 2049 | WP_001431407.1 | carboxy terminal-processing peptidase | - |
| AYN42_RS08040 () | 1337822..1338520 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| AYN42_RS08045 () | 1338617..1339114 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| AYN42_RS08050 () | 1339244..1340527 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| AYN42_RS08055 () | 1340496..1343129 | + | 2634 | WP_001299674.1 | hypothetical protein | VF |
| AYN42_RS08060 () | 1343209..1344648 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AYN42_RS08065 () | 1344766..1345002 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AYN42_RS08070 () | 1345107..1345298 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AYN42_RS08075 () | 1345299..1345955 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AYN42_RS08080 () | 1346640..1346906 | + | 267 | Protein_1477 | hypothetical protein | - |
| AYN42_RS31270 () | 1346910..1347560 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| AYN42_RS08095 () | 1347785..1348660 | - | 876 | WP_000491545.1 | hypothetical protein | VF |
| AYN42_RS08100 () | 1348801..1349070 | - | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| AYN42_RS08105 () | 1349072..1350385 | - | 1314 | WP_000268926.1 | ISNCY family transposase KIS | Transposase |
| AYN42_RS08110 () | 1350450..1351049 | - | 600 | WP_001230428.1 | Outer membrane protein X | VF |
| AYN42_RS08115 () | 1351105..1352643 | - | 1539 | WP_000099160.1 | IS66 family transposase ISEc22 | Transposase |
| AYN42_RS08120 () | 1352692..1353039 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| AYN42_RS08125 () | 1353036..1353440 | - | 405 | WP_000839165.1 | IS66 family transposase ISEc22 | Transposase |
| AYN42_RS08130 () | 1353579..1356974 | - | 3396 | WP_000514713.1 | host specificity protein J | - |
| AYN42_RS08135 () | 1357317..1357949 | - | 633 | WP_050439450.1 | tail assembly protein | - |
| AYN42_RS08140 () | 1357895..1358638 | - | 744 | WP_000194723.1 | C40 family peptidase | - |
| AYN42_RS08145 () | 1358649..1359347 | - | 699 | WP_001357740.1 | phage minor tail protein L | - |
| AYN42_RS08150 () | 1359347..1359676 | - | 330 | WP_000847298.1 | phage tail protein | - |
| AYN42_RS08155 () | 1359673..1362285 | - | 2613 | WP_000081762.1 | phage tail tape measure protein | - |
| AYN42_RS08160 () | 1362266..1362679 | - | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| AYN42_RS08165 () | 1362706..1363128 | - | 423 | WP_000479045.1 | phage minor tail protein G | - |
| AYN42_RS31560 () | 1363142..1363591 | - | 450 | Protein_1494 | Ig domain-containing protein | - |
| AYN42_RS31565 () | 1363592..1363879 | - | 288 | Protein_1495 | phage tail protein | - |
| AYN42_RS08175 () | 1363891..1364244 | - | 354 | WP_000752994.1 | head-tail joining protein | - |
| AYN42_RS08180 () | 1364256..1364651 | - | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| AYN42_RS08185 () | 1364693..1365718 | - | 1026 | WP_000063258.1 | major capsid protein | - |
| AYN42_RS08190 () | 1365774..1366106 | - | 333 | WP_001365129.1 | head decoration protein | - |
| AYN42_RS08195 () | 1366116..1367435 | - | 1320 | WP_000123251.1 | S49 family peptidase | - |
| AYN42_RS08200 () | 1367416..1369017 | - | 1602 | WP_001443752.1 | phage portal protein | - |
| AYN42_RS08205 () | 1369014..1369220 | - | 207 | WP_000198153.1 | gpW family protein | - |
| AYN42_RS08210 () | 1369217..1371142 | - | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| AYN42_RS08215 () | 1371117..1371662 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| AYN42_RS08225 () | 1372051..1372245 | + | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| AYN42_RS08235 () | 1372433..1373050 | - | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| AYN42_RS08240 () | 1373200..1373637 | - | 438 | WP_000092325.1 | lysis protein | - |
| AYN42_RS08245 () | 1373634..1374131 | - | 498 | WP_000075132.1 | lysozyme RrrD | - |
| AYN42_RS08250 () | 1374131..1374346 | - | 216 | WP_024164617.1 | class II holin family protein | - |
| AYN42_RS08260 () | 1374785..1376635 | - | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| AYN42_RS08265 () | 1376957..1377209 | - | 253 | Protein_1511 | DUF3927 family protein | - |
| AYN42_RS08270 () | 1377206..1377568 | - | 363 | Protein_1512 | tellurite resistance TerB family protein | - |
| AYN42_RS08275 () | 1377806..1378627 | - | 822 | WP_000762928.1 | antitermination protein | - |
| AYN42_RS08280 () | 1378624..1378998 | - | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AYN42_RS08285 () | 1379011..1380060 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| AYN42_RS08290 () | 1380062..1380334 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| AYN42_RS08295 () | 1380456..1380800 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| AYN42_RS08300 () | 1380920..1381075 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| AYN42_RS08305 () | 1381366..1381923 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| AYN42_RS08310 () | 1381925..1382143 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| AYN42_RS08315 () | 1382271..1382582 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| AYN42_RS08320 () | 1382575..1382802 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| AYN42_RS08325 () | 1382799..1383080 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| AYN42_RS08330 () | 1383113..1383874 | - | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| AYN42_RS08335 () | 1383900..1384641 | - | 742 | Protein_1525 | ATP-binding protein | - |
| AYN42_RS08340 () | 1384648..1385610 | - | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| AYN42_RS08345 () | 1385633..1386058 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| AYN42_RS08350 () | 1386055..1386357 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| AYN42_RS08355 () | 1386455..1386826 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| AYN42_RS08360 () | 1386847..1387038 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| AYN42_RS08365 () | 1387040..1387318 | + | 279 | WP_001448501.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AYN42_RS08370 () | 1387605..1387757 | + | 153 | WP_001427316.1 | DUF1391 family protein | - |
| AYN42_RS08375 () | 1388178..1388399 | + | 222 | WP_000560218.1 | killing protein KilR | - |
| AYN42_RS08380 () | 1388393..1388569 | + | 177 | WP_000245534.1 | hypothetical protein | - |
| AYN42_RS08385 () | 1388643..1388918 | + | 276 | WP_001307773.1 | hypothetical protein | - |
| AYN42_RS08390 () | 1389017..1391668 | + | 2652 | WP_000105101.1 | exodeoxyribonuclease VIII | - |
| AYN42_RS08395 () | 1391661..1392470 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| AYN42_RS08400 () | 1392527..1392721 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| AYN42_RS08405 () | 1392714..1392902 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1392720..1392898 | - | 179 | NuclAT_1 | - | - |
| - () | 1392720..1392898 | - | 179 | NuclAT_1 | - | - |
| - () | 1392720..1392898 | - | 179 | NuclAT_1 | - | - |
| - () | 1392720..1392898 | - | 179 | NuclAT_1 | - | - |
| AYN42_RS08410 () | 1393009..1393290 | + | 282 | WP_001443927.1 | excisionase | - |
| AYN42_RS08415 () | 1393256..1394371 | + | 1116 | WP_001189089.1 | hypothetical protein ; Integrase | Integrase |
| - () | 1394462..1394696 | + | 235 | - | - | Antitoxin Detail |
| - () | 1394463..1394566 | - | 104 | - | - | Toxin Detail |
| AYN42_RS08420 () | 1394724..1395065 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AYN42_RS08425 () | 1395078..1395947 | - | 870 | WP_032341845.1 | copper homeostasis membrane protein CopD | - |
| AYN42_RS08430 () | 1395951..1396325 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AYN42_RS08435 () | 1396464..1396694 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AYN42_RS08440 () | 1396796..1397452 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AYN42_RS08445 () | 1397476..1398138 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AYN42_RS08450 () | 1398135..1400195 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| AYN42_RS08455 () | 1400404..1401063 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| AYN42_RS08460 () | 1401390..1401746 | - | 357 | WP_001295500.1 | protein YebF | - |
| AYN42_RS08465 () | 1401813..1402103 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| AYN42_RS08470 () | 1402237..1403415 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| AYN42_RS08475 () | 1403471..1404112 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|