MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 101998 bp
Accession: NZ_CP027261 Location: 1..101998 Organism: Pectobacterium parmentieri strain IFB5427 Replicon: plasmid pPAR01
Accession: NZ_CP027261 Location: 1..101998 Organism: Pectobacterium parmentieri strain IFB5427 Replicon: plasmid pPAR01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5E18_RS24120 () | 1..645 | + | 645 | WP_127087992.1 | A24 family peptidase | - |
| C5E18_RS24125 () | 642..1748 | + | 1107 | WP_127087993.1 | hypothetical protein | VF |
| C5E18_RS24130 () | 2792..3916 | + | 1125 | WP_127087994.1 | site-specific integrase | - |
| C5E18_RS24135 () | 4034..4495 | + | 462 | WP_127087995.1 | DotD/TraH family lipoprotein | - |
| C5E18_RS24140 () | 4492..5286 | + | 795 | WP_127087996.1 | hypothetical protein | VF |
| C5E18_RS24145 () | 5283..6440 | + | 1158 | WP_127087997.1 | Twitching mobility protein | VF |
| C5E18_RS24150 () | 6437..6697 | + | 261 | WP_127087998.1 | IcmT/TraK family protein | - |
| C5E18_RS24155 () | 6712..8004 | + | 1293 | WP_127087999.1 | hypothetical protein | - |
| C5E18_RS24160 () | 7986..8606 | + | 621 | WP_127088000.1 | hypothetical protein | - |
| C5E18_RS24165 () | 8896..9603 | + | 708 | WP_127088061.1 | type II secretion system F family protein | - |
| C5E18_RS24170 () | 9558..9839 | + | 282 | WP_157985462.1 | hypothetical protein | VF |
| C5E18_RS24820 () | 10050..10223 | + | 174 | WP_157985463.1 | hypothetical protein | - |
| C5E18_RS24175 () | 10241..10630 | + | 390 | WP_157985464.1 | hypothetical protein | - |
| C5E18_RS24180 () | 10679..11158 | + | 480 | WP_127088003.1 | hypothetical protein | VF |
| C5E18_RS24185 () | 11159..11803 | + | 645 | WP_127087992.1 | A24 family peptidase | - |
| C5E18_RS24190 () | 11800..12924 | + | 1125 | WP_127088004.1 | hypothetical protein | VF |
| C5E18_RS24195 () | 14027..15151 | + | 1125 | WP_127087994.1 | site-specific integrase | - |
| C5E18_RS24200 () | 15269..15730 | + | 462 | WP_127087995.1 | DotD/TraH family lipoprotein | - |
| C5E18_RS24205 () | 15727..16521 | + | 795 | WP_127087996.1 | hypothetical protein | VF |
| C5E18_RS24210 () | 16518..17675 | + | 1158 | WP_127087997.1 | Twitching mobility protein | VF |
| C5E18_RS24215 () | 17672..17932 | + | 261 | WP_127087998.1 | IcmT/TraK family protein | - |
| C5E18_RS24220 () | 17947..22266 | + | 4320 | WP_127088005.1 | hypothetical protein | - |
| C5E18_RS24225 () | 22274..22609 | + | 336 | Protein_22 | conjugal transfer protein | - |
| C5E18_RS24230 () | 22770..23486 | + | 717 | WP_127088006.1 | hypothetical protein | VF |
| C5E18_RS24235 () | 23504..24514 | + | 1011 | WP_157985465.1 | hypothetical protein | VF |
| C5E18_RS24240 () | 24517..25782 | + | 1266 | WP_127088007.1 | conjugal transfer protein TraO | - |
| C5E18_RS24245 () | 25792..26607 | + | 816 | WP_127088008.1 | hypothetical protein | - |
| C5E18_RS24250 () | 26607..27134 | + | 528 | WP_157985466.1 | conjugal transfer protein TraQ | - |
| C5E18_RS24255 () | 27159..27542 | + | 384 | WP_127088009.1 | hypothetical protein | - |
| C5E18_RS24260 () | 27611..27817 | + | 207 | WP_127088010.1 | hypothetical protein | - |
| C5E18_RS24265 () | 27811..28764 | + | 954 | WP_127088011.1 | hypothetical protein | - |
| C5E18_RS24270 () | 28787..31864 | + | 3078 | WP_127088012.1 | ATP-binding protein | - |
| C5E18_RS24275 () | 31878..33074 | + | 1197 | WP_127088013.1 | conjugal transfer protein TraW | - |
| C5E18_RS24280 () | 33071..33583 | + | 513 | WP_127088014.1 | conjugal transfer protein TraX | - |
| C5E18_RS24285 () | 33637..35781 | + | 2145 | WP_127088015.1 | DotA/TraY family protein | - |
| C5E18_RS24290 () | 35870..36121 | + | 252 | WP_127088016.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| C5E18_RS24295 () | 36118..36405 | + | 288 | WP_127088017.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C5E18_RS24300 () | 36423..37103 | + | 681 | WP_127088018.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C5E18_RS24305 () | 37199..38464 | + | 1266 | WP_127088019.1 | conjugal transfer protein TrbA | - |
| C5E18_RS24310 () | 38469..39518 | + | 1050 | WP_127088020.1 | DsbC family protein | - |
| C5E18_RS24315 () | 39529..41859 | + | 2331 | WP_127088021.1 | hypothetical protein | VF |
| C5E18_RS24320 () | 42007..42267 | - | 261 | WP_127088022.1 | hypothetical protein | - |
| C5E18_RS24325 () | 42375..44306 | - | 1932 | WP_127088023.1 | Protein TraI | Relaxase |
| C5E18_RS24330 () | 44307..44651 | - | 345 | WP_043139551.1 | ribbon-helix-helix protein, CopG family | - |
| C5E18_RS24335 () | 44931..45254 | + | 324 | WP_127088024.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| C5E18_RS24340 () | 45417..46250 | - | 834 | WP_127088025.1 | DUF945 domain-containing protein | - |
| C5E18_RS24345 () | 46679..47248 | - | 570 | WP_127088026.1 | hypothetical protein | - |
| C5E18_RS24350 () | 47303..47545 | - | 243 | WP_127088027.1 | hypothetical protein | - |
| C5E18_RS24355 () | 47630..48052 | - | 423 | WP_127088028.1 | hypothetical protein | - |
| C5E18_RS24360 () | 48708..48965 | + | 258 | WP_127088029.1 | helix-turn-helix domain-containing protein | - |
| C5E18_RS24365 () | 49202..49504 | - | 303 | WP_127088030.1 | ArdK family transcriptional regulator | - |
| C5E18_RS24370 () | 49646..50728 | - | 1083 | WP_127088031.1 | phosphohydrolase | - |
| C5E18_RS24375 () | 50728..51243 | - | 516 | WP_127088032.1 | replication protein B | - |
| C5E18_RS24380 () | 51279..51620 | - | 342 | WP_111778730.1 | hypothetical protein | - |
| C5E18_RS24385 () | 52560..53063 | - | 504 | WP_127088033.1 | antirestriction protein ArdA | - |
| C5E18_RS24390 () | 54089..55132 | - | 1044 | WP_127088034.1 | hypothetical protein | - |
| C5E18_RS24395 () | 55212..55481 | - | 270 | WP_127088035.1 | hypothetical protein | - |
| C5E18_RS24400 () | 55491..55676 | - | 186 | WP_127088036.1 | hypothetical protein | - |
| C5E18_RS24405 () | 55669..56406 | - | 738 | WP_157985467.1 | plasmid SOS inhibition protein A | - |
| C5E18_RS24410 () | 56403..56846 | - | 444 | WP_127088038.1 | hypothetical protein | - |
| C5E18_RS24415 () | 56883..58967 | - | 2085 | WP_127088039.1 | ParB/RepB/Spo0J family partition protein | - |
| C5E18_RS24420 () | 59043..59402 | - | 360 | WP_111778898.1 | hypothetical protein | - |
| C5E18_RS24425 () | 60412..60669 | + | 258 | WP_127088040.1 | hypothetical protein | - |
| C5E18_RS24430 () | 60693..61388 | + | 696 | WP_127088041.1 | hypothetical protein | - |
| C5E18_RS24435 () | 61431..61634 | + | 204 | WP_111778970.1 | hemolysin expression modulator Hha | - |
| C5E18_RS24440 () | 61795..62580 | - | 786 | WP_111778969.1 | type I restriction-modification system subunit M | - |
| C5E18_RS24445 () | 63087..63329 | - | 243 | WP_127088042.1 | hypothetical protein | - |
| C5E18_RS24450 () | 63482..64081 | - | 600 | WP_127088043.1 | DUF1380 family protein | - |
| C5E18_RS24455 () | 64128..64505 | - | 378 | WP_157985468.1 | DUF1380 family protein | - |
| C5E18_RS24460 () | 64547..64975 | - | 429 | WP_111778965.1 | antirestriction protein | - |
| C5E18_RS24465 () | 65378..66181 | - | 804 | WP_039310654.1 | hypothetical protein | - |
| C5E18_RS24470 () | 66236..66649 | - | 414 | WP_051984989.1 | DUF1380 family protein | - |
| C5E18_RS24475 () | 66698..66919 | - | 222 | WP_127088044.1 | hypothetical protein | - |
| C5E18_RS24480 () | 66919..67599 | - | 681 | WP_111778964.1 | DNA methylase | - |
| C5E18_RS24485 () | 68199..68594 | - | 396 | WP_111778963.1 | plasmid partitioning/stability family protein | - |
| C5E18_RS24490 () | 68601..69557 | - | 957 | WP_111778962.1 | plasmid segregation protein ParM | - |
| C5E18_RS24495 () | 69951..70475 | + | 525 | Protein_76 | DUF4113 domain-containing protein | - |
| C5E18_RS24500 () | 70696..71043 | - | 348 | WP_111778961.1 | molecular chaperone GroEL | - |
| C5E18_RS24505 () | 71134..71775 | - | 642 | WP_111778960.1 | ParA family protein | - |
| C5E18_RS24510 () | 72311..73174 | + | 864 | WP_111778978.1 | RepB family plasmid replication initiator protein | - |
| C5E18_RS24515 () | 73388..74167 | - | 780 | WP_111778959.1 | site-specific integrase | - |
| C5E18_RS24520 () | 74164..74499 | - | 336 | WP_111778958.1 | hypothetical protein | - |
| C5E18_RS24525 () | 74506..74904 | - | 399 | WP_111778957.1 | hypothetical protein | - |
| C5E18_RS24530 () | 74940..75212 | - | 273 | WP_111778956.1 | hypothetical protein | - |
| C5E18_RS24535 () | 75222..75428 | - | 207 | WP_111778977.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| C5E18_RS24540 () | 75502..75831 | - | 330 | WP_111778955.1 | hypothetical protein | - |
| C5E18_RS24545 () | 76383..77321 | + | 939 | WP_111778954.1 | hypothetical protein | - |
| C5E18_RS24550 () | 77392..77571 | - | 180 | WP_127088045.1 | hypothetical protein | - |
| C5E18_RS24555 () | 77703..79205 | - | 1503 | WP_111778952.1 | RES family NAD+ phosphorylase | - |
| C5E18_RS24560 () | 79441..79671 | + | 231 | WP_111778951.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| C5E18_RS24565 () | 79668..80084 | + | 417 | WP_111778950.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C5E18_RS24570 () | 80126..81004 | - | 879 | WP_111778949.1 | restriction endonuclease | - |
| C5E18_RS24575 () | 81292..81558 | + | 267 | WP_111778948.1 | hypothetical protein | - |
| C5E18_RS24580 () | 81549..82133 | + | 585 | WP_111778947.1 | hypothetical protein | - |
| C5E18_RS24585 () | 82186..82587 | + | 402 | WP_039310721.1 | hypothetical protein | - |
| C5E18_RS24590 () | 82671..83021 | + | 351 | WP_039310723.1 | hypothetical protein | - |
| C5E18_RS24595 () | 83070..83318 | + | 249 | WP_111778946.1 | hypothetical protein | - |
| C5E18_RS24600 () | 83452..84423 | + | 972 | WP_127088046.1 | hypothetical protein | - |
| C5E18_RS24605 () | 84542..84802 | + | 261 | WP_127088047.1 | hypothetical protein | - |
| C5E18_RS24610 () | 85021..85707 | - | 687 | WP_039310733.1 | hypothetical protein | - |
| C5E18_RS24615 () | 85871..86524 | + | 654 | WP_111778943.1 | hypothetical protein | - |
| C5E18_RS24620 () | 86551..87177 | - | 627 | WP_111778942.1 | RES family NAD+ phosphorylase | - |
| C5E18_RS24950 () | 87391..88140 | + | 750 | WP_198678961.1 | hypothetical protein | - |
| C5E18_RS24630 () | 88360..88851 | - | 492 | WP_127088048.1 | ProQ/FinO family protein | - |
| C5E18_RS24635 () | 89119..89562 | + | 444 | WP_127088049.1 | hypothetical protein | - |
| C5E18_RS24640 () | 90444..91307 | - | 864 | WP_127088050.1 | incFII family plasmid replication initiator RepA | - |
| C5E18_RS24645 () | 92090..92644 | + | 555 | WP_127088051.1 | hypothetical protein | - |
| C5E18_RS24650 () | 92631..92849 | + | 219 | WP_127088052.1 | TraR/DksA C4-type zinc finger protein | - |
| C5E18_RS24655 () | 92964..93206 | + | 243 | WP_127088053.1 | hypothetical protein | - |
| C5E18_RS24660 () | 93203..94246 | + | 1044 | WP_127088054.1 | hypothetical protein | VF |
| C5E18_RS24665 () | 94256..94684 | + | 429 | WP_127088055.1 | hypothetical protein | VF |
| C5E18_RS24670 () | 94786..96348 | + | 1563 | WP_127088064.1 | Outer membrane lipoprotein BfpB | VF |
| C5E18_RS24675 () | 96352..97629 | + | 1278 | WP_127088056.1 | type 4b pilus protein PilO2 | - |
| C5E18_RS24680 () | 97616..98122 | + | 507 | WP_127088057.1 | hypothetical protein | VF |
| C5E18_RS24685 () | 98127..99653 | + | 1527 | WP_127088058.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| C5E18_RS24690 () | 99643..100794 | + | 1152 | WP_127088059.1 | hypothetical protein | VF |
| C5E18_RS24695 () | 100889..101470 | + | 582 | WP_127088060.1 | hypothetical protein | VF |
| C5E18_RS24700 () | 101519..101998 | + | 480 | WP_127088003.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|