MGE detailed information
MGE type: Conjugative plasmid MGE length: 151026 bp
Accession: NZ_CP027135 Location: 1..151026 Organism: Escherichia coli strain AR_0369 Replicon: plasmid unnamed3
Accession: NZ_CP027135 Location: 1..151026 Organism: Escherichia coli strain AR_0369 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC06_RS00005 () | 1..1115 | + | 1115 | Protein_0 | type 4b pilus protein PilO2 | - |
| CSC06_RS00010 () | 1102..1555 | + | 454 | Protein_1 | hypothetical protein | VF |
| CSC06_RS00020 () | 1566..3138 | + | 1573 | Protein_2 | Flp pilus assembly complex ATPase component TadA | - |
| CSC06_RS00025 () | 3126..4219 | + | 1094 | Protein_3 | hypothetical protein | VF |
| CSC06_RS00030 () | 4236..4850 | + | 615 | WP_001542527.1 | hypothetical protein | VF |
| CSC06_RS00035 () | 4860..5420 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| CSC06_RS00040 () | 5405..6061 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| CSC06_RS00045 () | 6061..7149 | + | 1089 | Protein_7 | hypothetical protein | VF |
| CSC06_RS00065 () | 8579..9733 | + | 1155 | WP_001139955.1 | integrase | - |
| CSC06_RS00070 () | 9884..10708 | + | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| CSC06_RS00075 () | 10794..11996 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| CSC06_RS00080 () | 12056..12640 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| CSC06_RS00085 () | 13034..13492 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| CSC06_RS00090 () | 13489..14307 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| CSC06_RS00095 () | 14304..15452 | + | 1149 | WP_001024971.1 | putative protein YggR | VF |
| CSC06_RS00100 () | 15449..15739 | + | 291 | WP_071791905.1 | conjugal transfer protein | - |
| CSC06_RS00105 () | 15754..16305 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| CSC06_RS00110 () | 16396..20163 | + | 3768 | WP_105394062.1 | DNA primase | - |
| CSC06_RS00115 () | 20181..20528 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| CSC06_RS00120 () | 20525..21217 | + | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| CSC06_RS00125 () | 21228..22211 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| CSC06_RS00130 () | 22214..23503 | + | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| CSC06_RS00135 () | 23503..24207 | + | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| CSC06_RS00140 () | 24207..24734 | + | 528 | WP_022630880.1 | conjugal transfer protein TraQ | - |
| CSC06_RS00145 () | 24785..25189 | + | 405 | WP_001422824.1 | IncI1-type conjugal transfer protein TraR | - |
| CSC06_RS00150 () | 25253..25441 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| CSC06_RS00155 () | 25425..26225 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| CSC06_RS00160 () | 26315..29359 | + | 3045 | WP_024227038.1 | IncI1-type conjugal transfer protein TraU | - |
| CSC06_RS00165 () | 29359..29973 | + | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| CSC06_RS00170 () | 29940..31142 | + | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| CSC06_RS00175 () | 31171..31755 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| CSC06_RS00180 () | 31852..34020 | + | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| CSC06_RS00185 () | 34094..34744 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CSC06_RS00190 () | 34816..35025 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| CSC06_RS26335 () | 35417..35593 | + | 177 | WP_001054904.1 | hypothetical protein | - |
| CSC06_RS00195 () | 35658..35954 | - | 297 | WP_001275298.1 | hypothetical protein | - |
| CSC06_RS00200 () | 36254..36505 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| CSC06_RS00205 () | 36577..36729 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - () | 36779..36841 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 36779..36841 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 36779..36841 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 36779..36841 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| CSC06_RS00210 () | 37021..38229 | + | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| CSC06_RS00215 () | 38248..39318 | + | 1071 | WP_105394063.1 | IncI1-type conjugal transfer protein TrbB | - |
| CSC06_RS00220 () | 39311..41602 | + | 2292 | WP_105394064.1 | conjugal transfer protein TrbC | - |
| CSC06_RS00225 () | 41639..44338 | - | 2700 | WP_001360283.1 | Protein TraI | Relaxase |
| CSC06_RS00230 () | 44349..44681 | - | 333 | WP_105394065.1 | nikA protein | - |
| CSC06_RS00235 () | 44914..45249 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| CSC06_RS00240 () | 45335..46183 | - | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
| CSC06_RS26505 () | 46532..46729 | + | 198 | Protein_45 | hypothetical protein | - |
| CSC06_RS00255 () | 46763..47014 | + | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| CSC06_RS00260 () | 47045..47239 | - | 195 | WP_001496986.1 | hypothetical protein | VF |
| CSC06_RS00270 () | 47302..48204 | - | 903 | WP_105394066.1 | Recombination-promoting nuclease RpnA | VF |
| CSC06_RS00275 () | 48269..48535 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| CSC06_RS00280 () | 48629..49063 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| CSC06_RS00295 () | 49792..50292 | - | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| CSC06_RS00305 () | 50754..51350 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| CSC06_RS00310 () | 51347..52066 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| CSC06_RS00315 () | 52063..52497 | - | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| CSC06_RS00320 () | 52552..54510 | - | 1959 | WP_105394067.1 | ParB/RepB/Spo0J family partition protein | - |
| CSC06_RS00325 () | 54569..54802 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| CSC06_RS00330 () | 54860..55387 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| CSC06_RS26340 () | 55771..56085 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| CSC06_RS00350 () | 56156..56347 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| CSC06_RS00355 () | 56344..56766 | - | 423 | WP_001378618.1 | DUF1380 family protein | - |
| CSC06_RS00360 () | 56813..57115 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CSC06_RS26510 () | 57655..58431 | - | 777 | WP_206354213.1 | hypothetical protein | - |
| CSC06_RS00375 () | 58477..58911 | - | 435 | WP_000274500.1 | DUF1380 family protein | - |
| CSC06_RS00380 () | 58925..59146 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| CSC06_RS00385 () | 59147..59830 | - | 684 | WP_000086147.1 | DNA methylase | - |
| CSC06_RS00390 () | 59906..60217 | - | 312 | WP_031942433.1 | hypothetical protein | - |
| CSC06_RS00395 () | 60214..61116 | - | 903 | WP_123907330.1 | DUF1281 domain-containing protein | - |
| CSC06_RS00405 () | 61534..61782 | + | 249 | WP_000618111.1 | DinI-like family protein | - |
| CSC06_RS00410 () | 61779..62216 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CSC06_RS00415 () | 62216..63490 | + | 1275 | WP_063077240.1 | Y-family DNA polymerase | - |
| CSC06_RS00420 () | 63492..63908 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| CSC06_RS00425 () | 63901..64881 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| CSC06_RS00430 () | 65295..65603 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| CSC06_RS00435 () | 65690..66334 | - | 645 | WP_001144036.1 | ParA family protein | - |
| CSC06_RS00440 () | 66514..67293 | - | 780 | WP_001164198.1 | site-specific integrase | - |
| CSC06_RS00445 () | 67295..67708 | - | 414 | WP_000465034.1 | hypothetical protein | - |
| CSC06_RS00450 () | 68242..68472 | + | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CSC06_RS00455 () | 68469..68885 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CSC06_RS00460 () | 68960..70525 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| CSC06_RS00465 () | 70510..71532 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| CSC06_RS00475 () | 71786..72472 | - | 687 | Protein_81 | IS1 family transposase IS1S | Transposase |
| CSC06_RS00490 () | 72998..75199 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| CSC06_RS00495 () | 75281..76558 | - | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| CSC06_RS00500 () | 76555..78297 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| CSC06_RS00505 () | 78297..79244 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| CSC06_RS00510 () | 79245..80969 | - | 1725 | WP_044068371.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| CSC06_RS00515 () | 81105..82298 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| CSC06_RS00520 () | 82678..83058 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| CSC06_RS00530 () | 83399..83812 | - | 414 | Protein_89 | phosphopyruvate hydratase | - |
| CSC06_RS00535 () | 83810..84067 | + | 258 | Protein_90 | Tn3 family transposase | - |
| CSC06_RS00540 () | 84301..85158 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| CSC06_RS00545 () | 85155..86012 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| CSC06_RS00550 () | 86009..86836 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| CSC06_RS00555 () | 86836..87750 | - | 915 | WP_000949005.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| CSC06_RS00570 () | 88106..88803 | + | 698 | Protein_95 | IS1 family transposase IS1G | Transposase |
| CSC06_RS00575 () | 88983..89496 | - | 514 | Protein_96 | DUF4113 domain-containing protein | - |
| CSC06_RS26515 () | 89557..89661 | - | 105 | Protein_97 | AAA family ATPase | - |
| CSC06_RS00585 () | 89663..89986 | - | 324 | Protein_98 | IS21 family transposase IS21 | Transposase |
| CSC06_RS00595 () | 90732..91709 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| CSC06_RS00600 () | 91994..92734 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| CSC06_RS00605 () | 92855..93043 | - | 189 | WP_001309252.1 | hypothetical protein | - |
| CSC06_RS00610 () | 93410..94579 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| CSC06_RS00615 () | 94805..94980 | - | 176 | Protein_103 | IS3 family transposase | - |
| CSC06_RS00620 () | 95426..95698 | - | 273 | WP_001322642.1 | Major pilu subunit operon regulatory protein PapB | VF |
| CSC06_RS00625 () | 96223..96659 | - | 437 | Protein_105 | IS3 family transposase IS2 | Transposase |
| CSC06_RS00630 () | 96941..98911 | + | 1971 | WP_001496335.1 | Hemin receptor | VF |
| CSC06_RS00635 () | 98918..99709 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| CSC06_RS00640 () | 99772..100380 | - | 609 | Protein_108 | IS66 family transposase ISEc22 | Transposase |
| CSC06_RS00645 () | 100448..101230 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| CSC06_RS00650 () | 101227..102249 | - | 1023 | WP_000255956.1 | IS21 family transposase IS100kyp | Transposase |
| CSC06_RS00660 () | 102335..103280 | - | 946 | Protein_111 | IS66 family transposase ISEc8 | Transposase |
| CSC06_RS00665 () | 103329..103703 | - | 375 | WP_024193849.1 | IS66 family transposase ISKpn24 | Transposase |
| CSC06_RS00670 () | 103728..104432 | + | 705 | WP_001067855.1 | IS66 family transposase ISKpn24 | Transposase |
| CSC06_RS00675 () | 104576..105130 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| CSC06_RS00680 () | 105261..106091 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| CSC06_RS00685 () | 106229..106669 | + | 441 | Protein_116 | CatB-related O-acetyltransferase | - |
| CSC06_RS00690 () | 106723..107427 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| CSC06_RS00695 () | 107534..108394 | + | 861 | WP_000557452.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CSC06_RS00700 () | 108407..108949 | + | 543 | WP_002063889.1 | AAA family ATPase | - |
| CSC06_RS00705 () | 109041..110089 | + | 1049 | Protein_120 | IS3 family transposase ISKpn11 | Transposase |
| CSC06_RS00710 () | 110143..110847 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| CSC06_RS00715 () | 110912..113155 | - | 2244 | Protein_122 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CSC06_RS00720 () | 113169..113501 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| CSC06_RS00725 () | 113548..114423 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| CSC06_RS00730 () | 114679..115941 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| CSC06_RS00735 () | 116147..116341 | - | 195 | Protein_126 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CSC06_RS00740 () | 116504..117061 | + | 558 | WP_001217881.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CSC06_RS00745 () | 117244..118104 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CSC06_RS00750 () | 118254..119498 | - | 1245 | Protein_129 | colicin | - |
| CSC06_RS00760 () | 119777..121123 | - | 1347 | WP_001132032.1 | hypothetical protein | - |
| CSC06_RS00770 () | 121477..122079 | + | 603 | WP_105394069.1 | proQ/FINO family protein | - |
| CSC06_RS00775 () | 122135..122644 | + | 510 | WP_053291131.1 | hypothetical protein | - |
| CSC06_RS00795 () | 123714..124745 | - | 1032 | WP_024227073.1 | replication initiation protein | - |
| CSC06_RS00810 () | 125718..125981 | + | 264 | WP_001749178.1 | ash family protein | - |
| CSC06_RS00815 () | 125899..126186 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| CSC06_RS00825 () | 126628..127161 | + | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| CSC06_RS00835 () | 127415..128098 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| CSC06_RS00845 () | 128271..128822 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| CSC06_RS00850 () | 128984..129238 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| CSC06_RS00855 () | 129405..129701 | + | 297 | WP_000494780.1 | hypothetical protein | - |
| CSC06_RS00865 () | 130325..131392 | + | 1068 | WP_012783947.1 | hypothetical protein | VF |
| CSC06_RS00870 () | 131392..131829 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| CSC06_RS00875 () | 131843..133525 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| CSC06_RS00880 () | 133518..134813 | + | 1296 | WP_001388364.1 | type 4b pilus protein PilO2 | - |
| CSC06_RS00885 () | 134800..135252 | + | 453 | WP_001247870.1 | hypothetical protein | VF |
| CSC06_RS00890 () | 135263..136816 | + | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CSC06_RS00895 () | 136829..137926 | + | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CSC06_RS00900 () | 137944..138558 | + | 615 | WP_001542527.1 | hypothetical protein | VF |
| CSC06_RS00905 () | 138568..139128 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| CSC06_RS00910 () | 139113..139769 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| CSC06_RS00915 () | 139769..141193 | + | 1425 | WP_001389385.1 | hypothetical protein | VF |
| CSC06_RS26520 () | 141190..141387 | - | 198 | WP_032159596.1 | hypothetical protein | - |
| CSC06_RS00935 () | 142442..143596 | + | 1155 | WP_001139955.1 | integrase | - |
| CSC06_RS00940 () | 143747..144571 | + | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| CSC06_RS00945 () | 144657..145859 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| CSC06_RS00950 () | 145918..146502 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| CSC06_RS00955 () | 146896..147354 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| CSC06_RS00960 () | 147351..148168 | + | 818 | Protein_158 | IncI1-type conjugal transfer lipoprotein TraI | - |
| CSC06_RS00965 () | 148354..149313 | + | 960 | Protein_159 | Twitching mobility protein | VF |
| CSC06_RS00970 () | 149310..149600 | + | 291 | WP_071791905.1 | conjugal transfer protein | - |
| CSC06_RS00975 () | 149615..150166 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| CSC06_RS00980 () | 150450..151026 | + | 577 | Protein_162 | DNA primase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|