MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 143064 bp
Accession: NZ_CP026985 Location: 532080..675143 Organism: Pectobacterium parmentieri strain IFB5619 Replicon: chromosome
Accession: NZ_CP026985 Location: 532080..675143 Organism: Pectobacterium parmentieri strain IFB5619 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5E25_RS02615 () | 527127..528383 | + | 1257 | WP_103808650.1 | integrase arm-type DNA-binding domain-containing protein | - |
| C5E25_RS02620 () | 528570..530219 | + | 1650 | WP_103808651.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| C5E25_RS02625 () | 530224..531546 | + | 1323 | WP_103808652.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| C5E25_RS02630 () | 531527..536608 | + | 5082 | WP_103808653.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| C5E25_RS02635 () | 536605..537129 | + | 525 | WP_103808654.1 | hypothetical protein | - |
| C5E25_RS02640 () | 537132..538298 | + | 1167 | WP_103808655.1 | DGQHR domain-containing protein | - |
| C5E25_RS02645 () | 538336..538689 | - | 354 | WP_103808656.1 | DNA sulfur modification protein DndE | - |
| C5E25_RS02650 () | 538689..540689 | - | 2001 | WP_103808657.1 | DNA sulfur modification protein DndD | - |
| C5E25_RS02655 () | 540679..542313 | - | 1635 | WP_103808658.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| C5E25_RS02660 () | 542310..543395 | - | 1086 | WP_103808659.1 | DNA sulfur modification protein DndB | - |
| C5E25_RS02665 () | 543743..544288 | - | 546 | WP_103808660.1 | transcriptional regulator | - |
| C5E25_RS02670 () | 544340..545794 | - | 1455 | WP_103808661.1 | Copper methylamine oxidase | VF |
| C5E25_RS02675 () | 546056..546637 | - | 582 | WP_103808662.1 | hypothetical protein | - |
| C5E25_RS02680 () | 546747..546959 | - | 213 | WP_103808663.1 | AlpA family transcriptional regulator | - |
| C5E25_RS02685 () | 547047..547649 | - | 603 | WP_103808664.1 | inovirus-type Gp2 protein | - |
| C5E25_RS02690 () | 548205..549137 | + | 933 | WP_121246950.1 | hypothetical protein | - |
| C5E25_RS02695 () | 549232..550119 | + | 888 | WP_103808666.1 | 50S ribosome-binding GTPase | - |
| C5E25_RS23125 () | 550303..550461 | + | 159 | WP_155242703.1 | hypothetical protein | - |
| C5E25_RS02700 () | 550608..551441 | + | 834 | WP_103808667.1 | hypothetical protein | - |
| C5E25_RS02705 () | 551499..551849 | + | 351 | WP_005974477.1 | hypothetical protein | - |
| C5E25_RS02710 () | 551972..552445 | + | 474 | WP_103808668.1 | DNA repair protein RadC | - |
| C5E25_RS02715 () | 552485..552820 | + | 336 | WP_103808669.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C5E25_RS02720 () | 552879..553199 | + | 321 | WP_103808670.1 | TA system toxin CbtA family protein | Toxin Detail |
| C5E25_RS02725 () | 553317..554150 | + | 834 | Protein_533 | DUF4942 domain-containing protein | - |
| C5E25_RS02730 () | 554260..554508 | + | 249 | WP_103808671.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C5E25_RS02735 () | 554512..554787 | + | 276 | WP_039517502.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C5E25_RS02740 () | 554835..555347 | + | 513 | WP_103808672.1 | AAA family ATPase | - |
| C5E25_RS02745 () | 555654..556774 | - | 1121 | Protein_537 | IS3 family transposase ISSen1 | Transposase |
| C5E25_RS02750 () | 556846..558014 | + | 1169 | WP_103808047.1 | IS3 family transposase ISLad1 | Transposase |
| C5E25_RS02755 () | 557989..558300 | - | 312 | WP_103808046.1 | hypothetical protein | - |
| C5E25_RS02760 () | 558782..559044 | - | 263 | Protein_540 | PAAR domain-containing protein | - |
| C5E25_RS02765 () | 559084..559833 | - | 750 | WP_103808045.1 | immunity 52 family protein | - |
| C5E25_RS02770 () | 560450..560911 | + | 462 | WP_103808044.1 | hypothetical protein | - |
| C5E25_RS02775 () | 560970..561497 | + | 528 | WP_025919504.1 | DUF4234 domain-containing protein | - |
| C5E25_RS23330 () | 561746..561979 | - | 234 | WP_025919505.1 | hypothetical protein | - |
| C5E25_RS02790 () | 562443..562925 | - | 483 | WP_012822239.1 | hypothetical protein | - |
| C5E25_RS02795 () | 562936..563640 | - | 705 | WP_012822240.1 | hypothetical protein | - |
| C5E25_RS02800 () | 563665..565200 | - | 1536 | WP_014698628.1 | Putative anti-sigma factor antagonist | VF |
| C5E25_RS02805 () | 565190..566422 | - | 1233 | WP_014698629.1 | 8-methylmenaquinol:fumarate reductase membrane anchor subunit | VF |
| C5E25_RS02810 () | 566403..567071 | - | 669 | WP_103808043.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C5E25_RS02815 () | 567089..569068 | - | 1980 | WP_012822244.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| C5E25_RS02820 () | 569078..570058 | - | 981 | WP_103808042.1 | hypothetical protein | - |
| C5E25_RS02825 () | 570065..572731 | - | 2667 | WP_103808041.1 | putative virulence factor | - |
| C5E25_RS02830 () | 572731..575733 | - | 3003 | WP_014698632.1 | virulence factor SrfB | - |
| C5E25_RS02835 () | 575734..577089 | - | 1356 | WP_043988897.1 | hypothetical protein | - |
| C5E25_RS02840 () | 577464..578693 | - | 1230 | WP_103808040.1 | VWA domain-containing protein | - |
| C5E25_RS02845 () | 579106..580227 | + | 1122 | WP_103808039.1 | cupin domain-containing protein | - |
| C5E25_RS02850 () | 580524..581654 | + | 1131 | WP_012822251.1 | lipase | - |
| C5E25_RS02855 () | 581718..582896 | - | 1179 | WP_012822252.1 | ABC transporter permease | - |
| C5E25_RS02860 () | 582890..584008 | - | 1119 | WP_103808038.1 | ABC transporter permease | - |
| C5E25_RS02865 () | 584008..585006 | - | 999 | WP_012822254.1 | efflux RND transporter periplasmic adaptor subunit | - |
| C5E25_RS02870 () | 585003..586418 | - | 1416 | WP_033070800.1 | TolC family protein | - |
| C5E25_RS02875 () | 586984..588774 | - | 1791 | WP_103808037.1 | ABC transporter ATP-binding protein/permease | - |
| C5E25_RS02880 () | 589048..590487 | - | 1440 | WP_005971181.1 | aspartate ammonia-lyase | - |
| C5E25_RS02885 () | 590739..591734 | - | 996 | WP_012822257.1 | Putative metal chaperone YciC | VF |
| C5E25_RS02890 () | 592388..592723 | - | 336 | WP_014698640.1 | hypothetical protein | - |
| C5E25_RS02900 () | 593303..593620 | - | 318 | WP_014698641.1 | helix-turn-helix domain-containing protein | - |
| C5E25_RS02905 () | 593722..594066 | - | 345 | WP_014698642.1 | hypothetical protein | - |
| C5E25_RS02910 () | 594081..594350 | - | 270 | WP_012822261.1 | hypothetical protein | - |
| C5E25_RS02915 () | 594511..596088 | - | 1578 | WP_103808036.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| C5E25_RS02920 () | 596288..597514 | + | 1227 | WP_103808088.1 | RtcB family protein | - |
| C5E25_RS02925 () | 597519..598310 | + | 792 | WP_103808035.1 | nucleotidyltransferase domain-containing protein | - |
| C5E25_RS02930 () | 598351..599691 | + | 1341 | WP_103808034.1 | hypothetical protein | - |
| C5E25_RS02935 () | 599697..600479 | - | 783 | WP_014698646.1 | HNH endonuclease | - |
| C5E25_RS02940 () | 600632..601729 | + | 1098 | WP_103808033.1 | DUF1615 domain-containing protein | - |
| C5E25_RS02945 () | 601827..603776 | - | 1950 | WP_014698648.1 | hypothetical protein | VF |
| C5E25_RS02950 () | 604127..606838 | - | 2712 | WP_103808032.1 | Potassium-transporting ATPase ATP-binding subunit | VF |
| C5E25_RS02955 () | 607319..608896 | - | 1578 | WP_012822271.1 | hypothetical protein | VF |
| C5E25_RS02960 () | 609325..609639 | - | 315 | WP_012822272.1 | L-rhamnose mutarotase | - |
| C5E25_RS02965 () | 609724..610548 | - | 825 | WP_103808031.1 | rhamnulose-1-phosphate aldolase | - |
| C5E25_RS02970 () | 610553..611815 | - | 1263 | WP_012822274.1 | L-rhamnose isomerase | - |
| C5E25_RS02975 () | 611812..613302 | - | 1491 | WP_012822275.1 | rhamnulokinase | - |
| C5E25_RS02980 () | 613671..614510 | + | 840 | WP_005971146.1 | HTH-type transcriptional activator RhaS | - |
| C5E25_RS02985 () | 614535..615389 | + | 855 | WP_012822276.1 | High-affinity proline transporter PutP | VF |
| C5E25_RS02990 () | 615447..615701 | - | 255 | WP_025919527.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| C5E25_RS02995 () | 615698..615949 | - | 252 | WP_033070807.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin Detail |
| C5E25_RS03000 () | 616024..617712 | - | 1689 | WP_025919529.1 | Phycocyanobilin lyase CpcT | VF |
| C5E25_RS03005 () | 617709..618575 | - | 867 | WP_012822280.1 | ABC transporter permease | - |
| C5E25_RS03010 () | 618568..619527 | - | 960 | WP_012822281.1 | ABC transporter permease | - |
| C5E25_RS03015 () | 619505..621118 | - | 1614 | WP_103808030.1 | ABC transporter substrate-binding protein | - |
| C5E25_RS03020 () | 621653..622267 | + | 615 | WP_012822283.1 | YagU family protein | - |
| C5E25_RS03025 () | 622567..623031 | - | 465 | WP_033070810.1 | DUF4265 domain-containing protein | - |
| C5E25_RS03030 () | 623563..624597 | - | 1035 | WP_012822285.1 | L-rhamnose/proton symporter RhaT | - |
| C5E25_RS03035 () | 624925..625431 | + | 507 | WP_012822286.1 | TIGR00645 family protein | - |
| C5E25_RS03040 () | 625526..626563 | + | 1038 | WP_012822287.1 | NADP-dependent oxidoreductase | - |
| C5E25_RS03045 () | 626651..626778 | + | 128 | Protein_595 | AraC family transcriptional regulator | - |
| C5E25_RS03050 () | 626959..627333 | - | 375 | WP_012822289.1 | hypothetical protein | - |
| C5E25_RS03055 () | 627639..628127 | - | 489 | WP_033070812.1 | hypothetical protein | - |
| C5E25_RS23130 () | 628124..628396 | - | 273 | WP_033070813.1 | hypothetical protein | - |
| C5E25_RS03060 () | 628615..628899 | - | 285 | WP_012822291.1 | hypothetical protein | - |
| C5E25_RS03065 () | 628899..629246 | - | 348 | WP_033070832.1 | hypothetical protein | - |
| C5E25_RS03070 () | 629269..629465 | - | 197 | Protein_601 | RHS repeat-associated core domain-containing protein | - |
| C5E25_RS03075 () | 629518..630516 | - | 999 | WP_103808029.1 | hypothetical protein | - |
| C5E25_RS03080 () | 630918..631205 | - | 288 | Protein_603 | Protein RhsC | VF |
| C5E25_RS03085 () | 631255..631326 | + | 72 | WP_081483335.1 | hypothetical protein | - |
| C5E25_RS03090 () | 631410..631694 | - | 285 | WP_012822294.1 | hypothetical protein | - |
| C5E25_RS03095 () | 631814..632347 | - | 534 | Protein_606 | RHS domain-containing protein | - |
| C5E25_RS03100 () | 632415..632951 | - | 537 | WP_049825590.1 | hypothetical protein | - |
| C5E25_RS03105 () | 633350..633526 | - | 177 | Protein_608 | Protein RhsC | VF |
| C5E25_RS03110 () | 633575..633997 | - | 423 | WP_103808028.1 | hypothetical protein | - |
| C5E25_RS03115 () | 633997..634449 | - | 453 | WP_025919546.1 | hypothetical protein | - |
| C5E25_RS03120 () | 634337..634945 | - | 609 | Protein_611 | hypothetical protein | - |
| C5E25_RS03125 () | 635001..635267 | - | 267 | WP_025919548.1 | type VI secretion system PAAR protein | - |
| C5E25_RS03130 () | 635359..635685 | - | 327 | Protein_613 | Major exported protein | VF |
| C5E25_RS03135 () | 635921..636223 | - | 303 | WP_012822301.1 | DUF2645 family protein | - |
| C5E25_RS03140 () | 636237..636545 | - | 309 | WP_025919551.1 | YjeO family protein | - |
| C5E25_RS03145 () | 636599..637033 | - | 435 | WP_012822303.1 | hypothetical protein | - |
| C5E25_RS03150 () | 637198..637497 | - | 300 | WP_014698666.1 | YjeO family protein | - |
| C5E25_RS03160 () | 638236..639447 | - | 1212 | WP_103808026.1 | FAD-dependent 2-octaprenylphenol hydroxylase | - |
| C5E25_RS03165 () | 639477..640655 | - | 1179 | WP_025919554.1 | 2-octaprenyl-6-methoxyphenyl hydroxylase | - |
| C5E25_RS03170 () | 640681..642006 | - | 1326 | WP_012822307.1 | Xaa-Pro aminopeptidase | - |
| C5E25_RS03175 () | 642068..642655 | - | 588 | WP_012822308.1 | YecA family protein | - |
| C5E25_RS03180 () | 642848..643177 | + | 330 | WP_005971092.1 | cell division protein ZapA | - |
| C5E25_RS03190 () | 643476..644117 | + | 642 | WP_025919555.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| C5E25_RS03195 () | 644114..645367 | - | 1254 | WP_012822310.1 | multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR | - |
| C5E25_RS03200 () | 645499..646881 | - | 1383 | WP_005971086.1 | DNA repair protein RadA | - |
| C5E25_RS03205 () | 646899..647876 | - | 978 | WP_014698671.1 | phosphoserine phosphatase | - |
| C5E25_RS03210 () | 648033..648725 | + | 693 | WP_025919556.1 | YtjB family periplasmic protein | - |
| C5E25_RS03215 () | 648931..649242 | + | 312 | WP_012822313.1 | helix-turn-helix transcriptional regulator | - |
| C5E25_RS03220 () | 649235..650449 | + | 1215 | WP_014698673.1 | Isoamylase | VF |
| C5E25_RS03225 () | 650730..652319 | + | 1590 | WP_012822315.1 | peptide chain release factor 3 | - |
| C5E25_RS03230 () | 652843..653451 | + | 609 | WP_012822316.1 | molecular chaperone OsmY | - |
| C5E25_RS03235 () | 653603..653764 | + | 162 | WP_003019081.1 | DUF1328 domain-containing protein | - |
| C5E25_RS03240 () | 653892..654080 | + | 189 | WP_012822317.1 | stress response protein | - |
| C5E25_RS03245 () | 654180..654977 | + | 798 | WP_012822318.1 | metal-dependent hydrolase | - |
| C5E25_RS03250 () | 655394..656671 | + | 1278 | WP_012822319.1 | NupC/NupG family nucleoside CNT transporter | - |
| C5E25_RS03255 () | 656820..657536 | + | 717 | WP_012822320.1 | Enterobactin synthase component D | VF |
| C5E25_RS03260 () | 657586..659559 | - | 1974 | WP_012822321.1 | Demethylmenaquinone methyltransferase | VF |
| C5E25_RS03265 () | 659676..660113 | - | 438 | WP_025919558.1 | MFS transporter | - |
| C5E25_RS03270 () | 660445..661641 | + | 1197 | WP_012822323.1 | Isochorismate synthase EntC | VF |
| C5E25_RS03275 () | 661638..663266 | + | 1629 | WP_025919559.1 | Enterobactin synthase component E | VF |
| C5E25_RS03280 () | 663406..664191 | + | 786 | WP_025919560.1 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | VF |
| C5E25_RS03285 () | 664272..665780 | - | 1509 | WP_012822327.1 | TolC family protein | - |
| C5E25_RS03290 () | 665883..667415 | - | 1533 | Protein_643 | putative Ig domain-containing protein | - |
| C5E25_RS03295 () | 667418..674638 | - | 7221 | Protein_644 | putative Ig domain-containing protein | - |
| C5E25_RS03300 () | 674995..675807 | - | 813 | WP_049825585.1 | tail fiber protein | - |
| C5E25_RS03305 () | 676101..678206 | - | 2106 | WP_025919563.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| C5E25_RS03310 () | 678203..679531 | - | 1329 | WP_014698685.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|