MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 142771 bp
Accession: NZ_CP026983 Location: 531934..674704 Organism: Pectobacterium parmentieri strain IFB5604 Replicon: chromosome
Accession: NZ_CP026983 Location: 531934..674704 Organism: Pectobacterium parmentieri strain IFB5604 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5E23_RS02600 () | 526981..528237 | + | 1257 | WP_103808650.1 | integrase arm-type DNA-binding domain-containing protein | - |
| C5E23_RS02605 () | 528424..530073 | + | 1650 | WP_103808651.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| C5E23_RS02610 () | 530078..531400 | + | 1323 | WP_103808652.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| C5E23_RS02615 () | 531381..536462 | + | 5082 | WP_103808653.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| C5E23_RS02620 () | 536459..536983 | + | 525 | WP_103808654.1 | hypothetical protein | - |
| C5E23_RS02625 () | 536986..538152 | + | 1167 | WP_103808655.1 | DGQHR domain-containing protein | - |
| C5E23_RS02630 () | 538190..538543 | - | 354 | WP_103808656.1 | DNA sulfur modification protein DndE | - |
| C5E23_RS02635 () | 538543..540543 | - | 2001 | WP_103808657.1 | DNA sulfur modification protein DndD | - |
| C5E23_RS02640 () | 540533..542167 | - | 1635 | WP_103808658.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| C5E23_RS02645 () | 542164..543249 | - | 1086 | WP_103808659.1 | DNA sulfur modification protein DndB | - |
| C5E23_RS02650 () | 543597..544142 | - | 546 | WP_103808660.1 | transcriptional regulator | - |
| C5E23_RS02655 () | 544194..545648 | - | 1455 | WP_103808661.1 | Flagellin | VF |
| C5E23_RS02660 () | 545910..546491 | - | 582 | WP_103808662.1 | hypothetical protein | - |
| C5E23_RS02665 () | 546601..546813 | - | 213 | WP_103808663.1 | AlpA family transcriptional regulator | - |
| C5E23_RS02670 () | 546901..547503 | - | 603 | WP_103808664.1 | inovirus-type Gp2 protein | - |
| C5E23_RS02675 () | 548059..548991 | + | 933 | WP_103808665.1 | hypothetical protein | - |
| C5E23_RS02680 () | 549086..549973 | + | 888 | WP_103808666.1 | 50S ribosome-binding GTPase | - |
| C5E23_RS22730 () | 550157..550315 | + | 159 | WP_155242703.1 | hypothetical protein | - |
| C5E23_RS02685 () | 550462..551295 | + | 834 | WP_103808667.1 | hypothetical protein | - |
| C5E23_RS02690 () | 551353..551703 | + | 351 | WP_005974477.1 | hypothetical protein | - |
| C5E23_RS02695 () | 551826..552299 | + | 474 | WP_103808668.1 | DNA repair protein RadC | - |
| C5E23_RS02700 () | 552339..552674 | + | 336 | WP_103808669.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C5E23_RS02705 () | 552733..553053 | + | 321 | WP_103808670.1 | TA system toxin CbtA family protein | Toxin Detail |
| C5E23_RS02710 () | 553171..554004 | + | 834 | Protein_527 | DUF4942 domain-containing protein | - |
| C5E23_RS02715 () | 554114..554362 | + | 249 | WP_103808671.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C5E23_RS02720 () | 554366..554641 | + | 276 | WP_039517502.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C5E23_RS02725 () | 554689..555201 | + | 513 | WP_103808672.1 | AAA family ATPase | - |
| C5E23_RS02730 () | 555508..556628 | - | 1121 | Protein_531 | IS3 family transposase ISSen1 | Transposase |
| C5E23_RS02735 () | 556700..557868 | + | 1169 | WP_103808047.1 | IS3 family transposase ISLad1 | Transposase |
| C5E23_RS02740 () | 557843..558154 | - | 312 | WP_103808046.1 | hypothetical protein | - |
| C5E23_RS02745 () | 558636..558898 | - | 263 | Protein_534 | PAAR domain-containing protein | - |
| C5E23_RS02750 () | 558938..559687 | - | 750 | WP_103808045.1 | immunity 52 family protein | - |
| C5E23_RS02755 () | 560304..560765 | + | 462 | WP_103808044.1 | hypothetical protein | - |
| C5E23_RS02760 () | 560824..561351 | + | 528 | WP_025919504.1 | DUF4234 domain-containing protein | - |
| C5E23_RS22915 () | 561600..561833 | - | 234 | WP_025919505.1 | hypothetical protein | - |
| C5E23_RS02775 () | 562297..562779 | - | 483 | WP_012822239.1 | hypothetical protein | - |
| C5E23_RS02780 () | 562790..563494 | - | 705 | WP_012822240.1 | hypothetical protein | - |
| C5E23_RS02785 () | 563519..565054 | - | 1536 | WP_014698628.1 | hypothetical protein | VF |
| C5E23_RS02790 () | 565044..566276 | - | 1233 | WP_014698629.1 | hypothetical protein | VF |
| C5E23_RS02795 () | 566257..566925 | - | 669 | WP_103808043.1 | putative ABC transporter ATP-binding protein YknY | VF |
| C5E23_RS02800 () | 566943..568922 | - | 1980 | WP_012822244.1 | hypothetical protein | VF |
| C5E23_RS02805 () | 568932..569912 | - | 981 | WP_103808042.1 | hypothetical protein | - |
| C5E23_RS02810 () | 569919..572585 | - | 2667 | WP_103808041.1 | putative virulence factor | - |
| C5E23_RS02815 () | 572585..575587 | - | 3003 | WP_014698632.1 | virulence factor SrfB | - |
| C5E23_RS02820 () | 575588..576943 | - | 1356 | WP_043988897.1 | hypothetical protein | - |
| C5E23_RS02825 () | 577318..578547 | - | 1230 | WP_103808040.1 | VWA domain-containing protein | - |
| C5E23_RS02830 () | 578960..580081 | + | 1122 | WP_103808039.1 | cupin domain-containing protein | - |
| C5E23_RS02835 () | 580378..581508 | + | 1131 | WP_012822251.1 | lipase | - |
| C5E23_RS02840 () | 581572..582750 | - | 1179 | WP_012822252.1 | ABC transporter permease | - |
| C5E23_RS02845 () | 582744..583862 | - | 1119 | WP_103808038.1 | ABC transporter permease | - |
| C5E23_RS02850 () | 583862..584860 | - | 999 | WP_012822254.1 | efflux RND transporter periplasmic adaptor subunit | - |
| C5E23_RS02855 () | 584857..586272 | - | 1416 | WP_033070800.1 | TolC family protein | - |
| C5E23_RS02860 () | 586838..588628 | - | 1791 | WP_103808037.1 | ABC transporter ATP-binding protein/permease | - |
| C5E23_RS02865 () | 588902..590341 | - | 1440 | WP_005971181.1 | aspartate ammonia-lyase | - |
| C5E23_RS02870 () | 590593..591588 | - | 996 | WP_012822257.1 | HTH-type transcriptional regulator GltR | VF |
| C5E23_RS02875 () | 592242..592577 | - | 336 | WP_014698640.1 | hypothetical protein | - |
| C5E23_RS02885 () | 593157..593474 | - | 318 | WP_014698641.1 | helix-turn-helix domain-containing protein | - |
| C5E23_RS02890 () | 593576..593920 | - | 345 | WP_014698642.1 | hypothetical protein | - |
| C5E23_RS02895 () | 593935..594204 | - | 270 | WP_012822261.1 | hypothetical protein | - |
| C5E23_RS02900 () | 594365..595942 | - | 1578 | WP_103808036.1 | Transcriptional regulatory protein GlrR | VF |
| C5E23_RS02905 () | 596142..597368 | + | 1227 | WP_103808088.1 | RtcB family protein | - |
| C5E23_RS02910 () | 597373..598164 | + | 792 | WP_103808035.1 | nucleotidyltransferase domain-containing protein | - |
| C5E23_RS02915 () | 598205..599545 | + | 1341 | WP_103808034.1 | hypothetical protein | - |
| C5E23_RS02920 () | 599551..600333 | - | 783 | WP_014698646.1 | HNH endonuclease | - |
| C5E23_RS02925 () | 600486..601583 | + | 1098 | WP_103808033.1 | DUF1615 domain-containing protein | - |
| C5E23_RS02930 () | 601681..603630 | - | 1950 | WP_014698648.1 | Methyl-accepting chemotaxis protein II | VF |
| C5E23_RS02935 () | 603981..606692 | - | 2712 | WP_103808032.1 | Magnesium-transporting ATPase, P-type 1 | VF |
| C5E23_RS02940 () | 607173..608750 | - | 1578 | WP_012822271.1 | Methyl-accepting chemotaxis protein II | VF |
| C5E23_RS02945 () | 609179..609493 | - | 315 | WP_012822272.1 | L-rhamnose mutarotase | - |
| C5E23_RS02950 () | 609578..610402 | - | 825 | WP_103808031.1 | rhamnulose-1-phosphate aldolase | - |
| C5E23_RS02955 () | 610407..611669 | - | 1263 | WP_012822274.1 | L-rhamnose isomerase | - |
| C5E23_RS02960 () | 611666..613156 | - | 1491 | WP_012822275.1 | rhamnulokinase | - |
| C5E23_RS02965 () | 613525..614364 | + | 840 | WP_005971146.1 | HTH-type transcriptional activator RhaS | - |
| C5E23_RS02970 () | 614389..615243 | + | 855 | WP_012822276.1 | HTH-type transcriptional activator RhaR | VF |
| C5E23_RS02975 () | 615301..615555 | - | 255 | WP_025919527.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| C5E23_RS02980 () | 615552..615803 | - | 252 | WP_033070807.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin Detail |
| C5E23_RS02985 () | 615878..617566 | - | 1689 | WP_025919529.1 | Glutathione import ATP-binding protein GsiA | VF |
| C5E23_RS02990 () | 617563..618429 | - | 867 | WP_012822280.1 | ABC transporter permease | - |
| C5E23_RS02995 () | 618422..619381 | - | 960 | WP_012822281.1 | ABC transporter permease | - |
| C5E23_RS03000 () | 619359..620972 | - | 1614 | WP_103808030.1 | ABC transporter substrate-binding protein | - |
| C5E23_RS03005 () | 621507..622121 | + | 615 | WP_012822283.1 | YagU family protein | - |
| C5E23_RS03010 () | 622421..622885 | - | 465 | WP_033070810.1 | DUF4265 domain-containing protein | - |
| C5E23_RS03015 () | 623417..624451 | - | 1035 | WP_012822285.1 | L-rhamnose/proton symporter RhaT | - |
| C5E23_RS03020 () | 624779..625285 | + | 507 | WP_012822286.1 | TIGR00645 family protein | - |
| C5E23_RS03025 () | 625380..626417 | + | 1038 | WP_012822287.1 | NADP-dependent oxidoreductase | - |
| C5E23_RS03030 () | 626505..626632 | + | 128 | Protein_589 | AraC family transcriptional regulator | - |
| C5E23_RS03035 () | 626813..627187 | - | 375 | WP_012822289.1 | hypothetical protein | - |
| C5E23_RS03040 () | 627493..627981 | - | 489 | WP_033070812.1 | hypothetical protein | - |
| C5E23_RS22735 () | 627978..628250 | - | 273 | WP_033070813.1 | hypothetical protein | - |
| C5E23_RS03045 () | 628469..628753 | - | 285 | WP_012822291.1 | hypothetical protein | - |
| C5E23_RS03050 () | 628753..629100 | - | 348 | WP_033070832.1 | hypothetical protein | - |
| C5E23_RS03055 () | 629123..629319 | - | 197 | Protein_595 | RHS repeat-associated core domain-containing protein | - |
| C5E23_RS03060 () | 629372..630370 | - | 999 | WP_103808029.1 | hypothetical protein | - |
| C5E23_RS03065 () | 630772..631059 | - | 288 | Protein_597 | Protein RhsC | VF |
| C5E23_RS03070 () | 631109..631180 | + | 72 | WP_081483335.1 | hypothetical protein | - |
| C5E23_RS03075 () | 631264..631548 | - | 285 | WP_012822294.1 | hypothetical protein | - |
| C5E23_RS03080 () | 631668..632201 | - | 534 | Protein_600 | RHS domain-containing protein | - |
| C5E23_RS03085 () | 632269..632805 | - | 537 | WP_049825590.1 | hypothetical protein | - |
| C5E23_RS03090 () | 633204..633380 | - | 177 | Protein_602 | Protein RhsC | VF |
| C5E23_RS03095 () | 633429..633851 | - | 423 | WP_103808028.1 | hypothetical protein | - |
| C5E23_RS03100 () | 633851..634303 | - | 453 | WP_025919546.1 | hypothetical protein | - |
| C5E23_RS03105 () | 634191..634799 | - | 609 | Protein_605 | hypothetical protein | - |
| C5E23_RS03110 () | 634855..635121 | - | 267 | WP_025919548.1 | type VI secretion system PAAR protein | - |
| C5E23_RS03115 () | 635213..635539 | - | 327 | Protein_607 | Major exported protein | VF |
| C5E23_RS03120 () | 635775..636077 | - | 303 | WP_012822301.1 | DUF2645 family protein | - |
| C5E23_RS03125 () | 636091..636399 | - | 309 | WP_025919551.1 | YjeO family protein | - |
| C5E23_RS03130 () | 636453..636887 | - | 435 | WP_012822303.1 | hypothetical protein | - |
| C5E23_RS03135 () | 637052..637351 | - | 300 | WP_014698666.1 | YjeO family protein | - |
| C5E23_RS03145 () | 638090..639301 | - | 1212 | WP_103808026.1 | FAD-dependent 2-octaprenylphenol hydroxylase | - |
| C5E23_RS03150 () | 639331..640509 | - | 1179 | WP_103808025.1 | 2-octaprenyl-6-methoxyphenyl hydroxylase | - |
| C5E23_RS03155 () | 640535..641860 | - | 1326 | WP_103808024.1 | Xaa-Pro aminopeptidase | - |
| C5E23_RS03160 () | 641922..642509 | - | 588 | WP_012822308.1 | YecA family protein | - |
| C5E23_RS03165 () | 642702..643031 | + | 330 | WP_005971092.1 | cell division protein ZapA | - |
| C5E23_RS03175 () | 643330..643971 | + | 642 | WP_033071930.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| C5E23_RS03180 () | 643968..645221 | - | 1254 | WP_012822310.1 | multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR | - |
| C5E23_RS03185 () | 645353..646735 | - | 1383 | WP_005971086.1 | DNA repair protein RadA | - |
| C5E23_RS03190 () | 646753..647730 | - | 978 | WP_012822311.1 | phosphoserine phosphatase | - |
| C5E23_RS03195 () | 647887..648579 | + | 693 | WP_014698672.1 | YtjB family periplasmic protein | - |
| C5E23_RS03200 () | 648785..649096 | + | 312 | WP_012822313.1 | helix-turn-helix transcriptional regulator | - |
| C5E23_RS03205 () | 649089..650303 | + | 1215 | WP_014698673.1 | Serine/threonine-protein kinase toxin HipA | VF |
| C5E23_RS03210 () | 650584..652173 | + | 1590 | WP_012822315.1 | peptide chain release factor 3 | - |
| C5E23_RS03215 () | 652697..653305 | + | 609 | WP_012822316.1 | molecular chaperone OsmY | - |
| C5E23_RS03220 () | 653457..653618 | + | 162 | WP_003019081.1 | DUF1328 domain-containing protein | - |
| C5E23_RS03225 () | 653746..653934 | + | 189 | WP_012822317.1 | stress response protein | - |
| C5E23_RS03230 () | 654034..654831 | + | 798 | WP_012822318.1 | metal-dependent hydrolase | - |
| C5E23_RS03235 () | 655248..656525 | + | 1278 | WP_012822319.1 | NupC/NupG family nucleoside CNT transporter | - |
| C5E23_RS03240 () | 656674..657390 | + | 717 | WP_012822320.1 | Enterobactin synthase component D | VF |
| C5E23_RS03245 () | 657440..659359 | - | 1920 | WP_181021263.1 | Colicin I receptor | VF |
| C5E23_RS03250 () | 659530..659967 | - | 438 | WP_012822322.1 | MFS transporter | - |
| C5E23_RS03255 () | 660299..661495 | + | 1197 | WP_103808023.1 | Isochorismate synthase EntC | VF |
| C5E23_RS03260 () | 661492..663120 | + | 1629 | WP_103808022.1 | Enterobactin synthase component E | VF |
| C5E23_RS03265 () | 663260..664045 | + | 786 | WP_103808021.1 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | VF |
| C5E23_RS03270 () | 664126..665634 | - | 1509 | WP_012822327.1 | TolC family protein | - |
| C5E23_RS03275 () | 665737..674199 | - | 8463 | WP_121301509.1 | putative Ig domain-containing protein | - |
| C5E23_RS03280 () | 674556..675368 | - | 813 | WP_049825585.1 | tail fiber protein | - |
| C5E23_RS03285 () | 675642..677747 | - | 2106 | WP_103807832.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| C5E23_RS03290 () | 677744..679072 | - | 1329 | WP_014698685.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|