Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 552339..553053 Replicon chromosome
Accession NZ_CP026983
Organism Pectobacterium parmentieri strain IFB5604

Toxin (Protein)


Gene name ykfI Uniprot ID -
Locus tag C5E23_RS02705 Protein ID WP_103808670.1
Coordinates 552733..553053 (+) Length 107 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID -
Locus tag C5E23_RS02700 Protein ID WP_103808669.1
Coordinates 552339..552674 (+) Length 112 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C5E23_RS02675 548059..548991 + 933 WP_103808665.1 hypothetical protein -
C5E23_RS02680 549086..549973 + 888 WP_103808666.1 50S ribosome-binding GTPase -
C5E23_RS22730 550157..550315 + 159 WP_155242703.1 hypothetical protein -
C5E23_RS02685 550462..551295 + 834 WP_103808667.1 hypothetical protein -
C5E23_RS02690 551353..551703 + 351 WP_005974477.1 hypothetical protein -
C5E23_RS02695 551826..552299 + 474 WP_103808668.1 DNA repair protein RadC -
C5E23_RS02700 552339..552674 + 336 WP_103808669.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
C5E23_RS02705 552733..553053 + 321 WP_103808670.1 TA system toxin CbtA family protein Toxin
C5E23_RS02710 553171..554004 + 834 Protein_527 DUF4942 domain-containing protein -
C5E23_RS02715 554114..554362 + 249 WP_103808671.1 ribbon-helix-helix domain-containing protein -
C5E23_RS02720 554366..554641 + 276 WP_039517502.1 type II toxin-antitoxin system RelE/ParE family toxin -
C5E23_RS02725 554689..555201 + 513 WP_103808672.1 AAA family ATPase -
C5E23_RS02730 555508..556628 - 1121 Protein_531 IS3 family transposase -
C5E23_RS02735 556700..557868 + 1169 WP_103808047.1 IS3 family transposase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - mgtB / hcp 531934..674704 142770


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(1-105)

Antitoxin

(7-106)


Sequences


Toxin        


Download         Length: 107 a.a.        Molecular weight: 12049.71 Da        Isoelectric Point: 4.5971

>T96971 WP_103808670.1 NZ_CP026983:552733-553053 [Pectobacterium parmentieri]
MQTSPAIPPREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDVLRARRANGLLKA

Download         Length: 321 bp

>T96971 NZ_CP026983:552733-553053 [Pectobacterium parmentieri]
ATGCAAACATCACCTGCAATCCCGCCACGGGAGGATAACCCCTGTCCGTCACCCATAGCCGCCTGGCAGCAACTGCTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACGCCGTTCTGTGAGGAAAACGTGATTCAGGAACATATCG
ATGCTGGCATCACATTGGTCAATGCCGTGAATTTTCTGGTGGAGAAATACGAACTGGTGCGTATCGACCGCGACGGTTTT
AACTGGCAGGAGCAATCACCGTTTCTTACTGCCGTTGATGTTCTCCGTGCCAGACGTGCTAACGGCTTGCTCAAAGCATA
A

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12529.30 Da        Isoelectric Point: 5.8292

>AT96971 WP_103808669.1 NZ_CP026983:552339-552674 [Pectobacterium parmentieri]
MSLSDTPEWGLKSAITPRFGARLVQEGNRLHYLADRVSFIGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQGCIT
LYCNEWTCEADTLGSFGYVYIAIYPSSAATQ

Download         Length: 336 bp

>AT96971 NZ_CP026983:552339-552674 [Pectobacterium parmentieri]
ATGTCATTATCGGATACCCCGGAATGGGGACTAAAAAGTGCCATCACTCCGCGATTCGGAGCCAGACTGGTGCAGGAGGG
TAACCGTCTGCATTATCTGGCAGACCGGGTCAGCTTTATCGGTACGTTTAGCAAAACAGAAGCCCAAAGTCTGGAACGTT
GCTTCCCTGAGCTAATTAAGCTGTTGGAACAGAAGCTACGCATGGGGGAACTGAATCCCCGGCAGCAGGGTTGCATCACG
TTGTATTGCAACGAATGGACCTGTGAAGCCGATACGCTGGGCAGTTTTGGCTACGTGTATATTGCTATTTATCCCTCTTC
AGCGGCAACACAATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References