Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | ykfI-yfjZ/CbtA-CbeA |
Location | 552339..553053 | Replicon | chromosome |
Accession | NZ_CP026983 | ||
Organism | Pectobacterium parmentieri strain IFB5604 |
Toxin (Protein)
Gene name | ykfI | Uniprot ID | - |
Locus tag | C5E23_RS02705 | Protein ID | WP_103808670.1 |
Coordinates | 552733..553053 (+) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | - |
Locus tag | C5E23_RS02700 | Protein ID | WP_103808669.1 |
Coordinates | 552339..552674 (+) | Length | 112 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C5E23_RS02675 | 548059..548991 | + | 933 | WP_103808665.1 | hypothetical protein | - |
C5E23_RS02680 | 549086..549973 | + | 888 | WP_103808666.1 | 50S ribosome-binding GTPase | - |
C5E23_RS22730 | 550157..550315 | + | 159 | WP_155242703.1 | hypothetical protein | - |
C5E23_RS02685 | 550462..551295 | + | 834 | WP_103808667.1 | hypothetical protein | - |
C5E23_RS02690 | 551353..551703 | + | 351 | WP_005974477.1 | hypothetical protein | - |
C5E23_RS02695 | 551826..552299 | + | 474 | WP_103808668.1 | DNA repair protein RadC | - |
C5E23_RS02700 | 552339..552674 | + | 336 | WP_103808669.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
C5E23_RS02705 | 552733..553053 | + | 321 | WP_103808670.1 | TA system toxin CbtA family protein | Toxin |
C5E23_RS02710 | 553171..554004 | + | 834 | Protein_527 | DUF4942 domain-containing protein | - |
C5E23_RS02715 | 554114..554362 | + | 249 | WP_103808671.1 | ribbon-helix-helix domain-containing protein | - |
C5E23_RS02720 | 554366..554641 | + | 276 | WP_039517502.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
C5E23_RS02725 | 554689..555201 | + | 513 | WP_103808672.1 | AAA family ATPase | - |
C5E23_RS02730 | 555508..556628 | - | 1121 | Protein_531 | IS3 family transposase | - |
C5E23_RS02735 | 556700..557868 | + | 1169 | WP_103808047.1 | IS3 family transposase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | mgtB / hcp | 531934..674704 | 142770 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12049.71 Da Isoelectric Point: 4.5971
>T96971 WP_103808670.1 NZ_CP026983:552733-553053 [Pectobacterium parmentieri]
MQTSPAIPPREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDVLRARRANGLLKA
MQTSPAIPPREDNPCPSPIAAWQQLLTYLLEKHYGLTLNDTPFCEENVIQEHIDAGITLVNAVNFLVEKYELVRIDRDGF
NWQEQSPFLTAVDVLRARRANGLLKA
Download Length: 321 bp
>T96971 NZ_CP026983:552733-553053 [Pectobacterium parmentieri]
ATGCAAACATCACCTGCAATCCCGCCACGGGAGGATAACCCCTGTCCGTCACCCATAGCCGCCTGGCAGCAACTGCTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACGCCGTTCTGTGAGGAAAACGTGATTCAGGAACATATCG
ATGCTGGCATCACATTGGTCAATGCCGTGAATTTTCTGGTGGAGAAATACGAACTGGTGCGTATCGACCGCGACGGTTTT
AACTGGCAGGAGCAATCACCGTTTCTTACTGCCGTTGATGTTCTCCGTGCCAGACGTGCTAACGGCTTGCTCAAAGCATA
A
ATGCAAACATCACCTGCAATCCCGCCACGGGAGGATAACCCCTGTCCGTCACCCATAGCCGCCTGGCAGCAACTGCTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACACGCCGTTCTGTGAGGAAAACGTGATTCAGGAACATATCG
ATGCTGGCATCACATTGGTCAATGCCGTGAATTTTCTGGTGGAGAAATACGAACTGGTGCGTATCGACCGCGACGGTTTT
AACTGGCAGGAGCAATCACCGTTTCTTACTGCCGTTGATGTTCTCCGTGCCAGACGTGCTAACGGCTTGCTCAAAGCATA
A
Antitoxin
Download Length: 112 a.a. Molecular weight: 12529.30 Da Isoelectric Point: 5.8292
>AT96971 WP_103808669.1 NZ_CP026983:552339-552674 [Pectobacterium parmentieri]
MSLSDTPEWGLKSAITPRFGARLVQEGNRLHYLADRVSFIGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQGCIT
LYCNEWTCEADTLGSFGYVYIAIYPSSAATQ
MSLSDTPEWGLKSAITPRFGARLVQEGNRLHYLADRVSFIGTFSKTEAQSLERCFPELIKLLEQKLRMGELNPRQQGCIT
LYCNEWTCEADTLGSFGYVYIAIYPSSAATQ
Download Length: 336 bp
>AT96971 NZ_CP026983:552339-552674 [Pectobacterium parmentieri]
ATGTCATTATCGGATACCCCGGAATGGGGACTAAAAAGTGCCATCACTCCGCGATTCGGAGCCAGACTGGTGCAGGAGGG
TAACCGTCTGCATTATCTGGCAGACCGGGTCAGCTTTATCGGTACGTTTAGCAAAACAGAAGCCCAAAGTCTGGAACGTT
GCTTCCCTGAGCTAATTAAGCTGTTGGAACAGAAGCTACGCATGGGGGAACTGAATCCCCGGCAGCAGGGTTGCATCACG
TTGTATTGCAACGAATGGACCTGTGAAGCCGATACGCTGGGCAGTTTTGGCTACGTGTATATTGCTATTTATCCCTCTTC
AGCGGCAACACAATAA
ATGTCATTATCGGATACCCCGGAATGGGGACTAAAAAGTGCCATCACTCCGCGATTCGGAGCCAGACTGGTGCAGGAGGG
TAACCGTCTGCATTATCTGGCAGACCGGGTCAGCTTTATCGGTACGTTTAGCAAAACAGAAGCCCAAAGTCTGGAACGTT
GCTTCCCTGAGCTAATTAAGCTGTTGGAACAGAAGCTACGCATGGGGGAACTGAATCCCCGGCAGCAGGGTTGCATCACG
TTGTATTGCAACGAATGGACCTGTGAAGCCGATACGCTGGGCAGTTTTGGCTACGTGTATATTGCTATTTATCCCTCTTC
AGCGGCAACACAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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