MGE detailed information
MGE type: Conjugative plasmid MGE length: 131954 bp
Accession: NZ_CP026937 Location: 1..131954 Organism: Escherichia coli strain CFS3292 Replicon: plasmid pCFS3292-2
Accession: NZ_CP026937 Location: 1..131954 Organism: Escherichia coli strain CFS3292 Replicon: plasmid pCFS3292-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5F72_RS26175 () | 695..1546 | + | 852 | WP_000240536.1 | replication protein | - |
| C5F72_RS26180 () | 1854..2669 | + | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| C5F72_RS26185 () | 2730..3533 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| C5F72_RS26190 () | 3533..4369 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| C5F72_RS26195 () | 4341..5459 | - | 1119 | WP_000845049.1 | IS91 family transposase ISAzo26 | Transposase |
| C5F72_RS26200 () | 5616..6089 | + | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| C5F72_RS26205 () | 6182..6973 | + | 792 | WP_001206317.1 | Streptomycin 3''-adenylyltransferase | ARG |
| C5F72_RS26210 () | 7137..7484 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| C5F72_RS26215 () | 7478..8317 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| C5F72_RS26220 () | 8445..8945 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| C5F72_RS26225 () | 9121..9903 | - | 783 | WP_001163403.1 | IS21 family transposase IS1326 | Transposase |
| C5F72_RS26230 () | 9893..11416 | - | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| C5F72_RS26235 () | 11518..12378 | - | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| C5F72_RS26240 () | 12381..14060 | - | 1680 | WP_000179844.1 | DDE-type integrase/transposase/recombinase | - |
| C5F72_RS26245 () | 14135..14803 | - | 669 | WP_001300294.1 | putative signaling protein | VF |
| C5F72_RS26250 () | 14839..15075 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| C5F72_RS26255 () | 15072..15434 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| C5F72_RS26260 () | 15452..17146 | - | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| C5F72_RS26265 () | 17198..17620 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| C5F72_RS26270 () | 17656..17931 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| C5F72_RS26275 () | 17945..18295 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| C5F72_RS26280 () | 18367..18801 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| C5F72_RS26285 () | 18908..19605 | - | 698 | Protein_23 | IS1 family transposase IS1R | Transposase |
| C5F72_RS26290 () | 19970..20371 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| C5F72_RS26295 () | 20304..20561 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| C5F72_RS26300 () | 20654..21307 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| C5F72_RS26305 () | 22248..23105 | - | 858 | WP_061583826.1 | incFII family plasmid replication initiator RepA | - |
| C5F72_RS26310 () | 23098..23172 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| C5F72_RS26315 () | 23404..23661 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| C5F72_RS26320 () | 23945..24151 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 24138..24199 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 24138..24199 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 24138..24199 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 24138..24199 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| C5F72_RS26325 () | 24541..24753 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| C5F72_RS26330 () | 24888..25448 | - | 561 | WP_001541898.1 | fertility inhibition protein FinO | - |
| C5F72_RS26335 () | 25503..26249 | - | 747 | WP_001541899.1 | conjugal transfer pilus acetylase TraX | - |
| C5F72_RS26340 () | 26269..31539 | - | 5271 | WP_159376084.1 | Multifunctional conjugation protein TraI | Relaxase |
| C5F72_RS26345 () | 31539..33692 | - | 2154 | WP_032279813.1 | type IV conjugative transfer system coupling protein TraD | - |
| C5F72_RS26350 () | 33945..34676 | - | 732 | WP_024192715.1 | complement resistance protein TraT | - |
| C5F72_RS26355 () | 34708..35211 | - | 504 | WP_061583830.1 | surface exclusion protein | - |
| C5F72_RS26360 () | 35226..38048 | - | 2823 | WP_032200986.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C5F72_RS26365 () | 38045..39418 | - | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| C5F72_RS26370 () | 39622..40047 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| C5F72_RS26375 () | 40044..40394 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| C5F72_RS26380 () | 40425..41642 | + | 1218 | Protein_42 | IS66 family transposase ISEc23 | Transposase |
| C5F72_RS26385 () | 41735..42963 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C5F72_RS26390 () | 42973..43374 | + | 402 | Protein_44 | IS66 family transposase ISEc23 | Transposase |
| C5F72_RS26395 () | 43393..43656 | - | 264 | Protein_45 | P-type conjugative transfer protein TrbJ | - |
| C5F72_RS26400 () | 43586..44131 | - | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C5F72_RS26405 () | 44118..44402 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C5F72_RS26410 () | 44521..44868 | - | 348 | WP_001287902.1 | conjugal transfer protein TrbA | - |
| C5F72_RS26415 () | 44884..45627 | - | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C5F72_RS26420 () | 45620..45877 | - | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| C5F72_RS26425 () | 45904..47712 | - | 1809 | WP_032200982.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C5F72_RS26430 () | 47709..48347 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C5F72_RS26435 () | 48356..49348 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| C5F72_RS26440 () | 49345..49977 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| C5F72_RS26445 () | 49974..50360 | - | 387 | WP_000099689.1 | type-F conjugative transfer system protein TrbI | - |
| C5F72_RS26450 () | 50357..52984 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| C5F72_RS26455 () | 53144..53365 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| C5F72_RS26460 () | 53500..54015 | - | 516 | WP_025269857.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C5F72_RS26465 () | 54012..54263 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| C5F72_RS26470 () | 54275..54505 | - | 231 | WP_001398289.1 | conjugal transfer protein TrbD | - |
| C5F72_RS26475 () | 54459..55049 | - | 591 | WP_001523507.1 | conjugal transfer protein TraP | - |
| C5F72_RS26480 () | 55039..56466 | - | 1428 | WP_061583829.1 | conjugal transfer protein TraB | - |
| C5F72_RS26485 () | 56466..57170 | - | 705 | WP_148713375.1 | type-F conjugative transfer system secretin TraK | - |
| C5F72_RS26490 () | 57181..57747 | - | 567 | WP_000399797.1 | type IV conjugative transfer system protein TraE | - |
| C5F72_RS26495 () | 57769..58080 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| C5F72_RS26500 () | 58095..58454 | - | 360 | WP_000994781.1 | type IV conjugative transfer system pilin TraA | - |
| C5F72_RS26505 () | 58487..58882 | - | 396 | WP_032200978.1 | conjugal transfer relaxosome protein TraY | - |
| C5F72_RS26510 () | 58981..59670 | - | 690 | WP_000283384.1 | conjugal transfer transcriptional regulator TraJ | - |
| C5F72_RS26515 () | 59857..60240 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| C5F72_RS26520 () | 60561..61163 | + | 603 | WP_077756451.1 | hypothetical protein | VF |
| C5F72_RS26525 () | 61459..62280 | - | 822 | WP_063116925.1 | DUF945 domain-containing protein | - |
| C5F72_RS26530 () | 62398..62685 | - | 288 | WP_063116926.1 | hypothetical protein | - |
| C5F72_RS26535 () | 62687..63142 | + | 456 | WP_063116929.1 | hypothetical protein | - |
| C5F72_RS26540 () | 63228..63791 | - | 564 | WP_032200974.1 | class I SAM-dependent methyltransferase | - |
| C5F72_RS26545 () | 63838..65199 | - | 1362 | WP_063116927.1 | DUF3560 domain-containing protein | - |
| C5F72_RS26550 () | 65251..65481 | - | 231 | WP_063116928.1 | hypothetical protein | - |
| C5F72_RS26555 () | 66465..66656 | - | 192 | WP_032200969.1 | hypothetical protein | - |
| C5F72_RS26560 () | 66653..66931 | - | 279 | WP_166509434.1 | DNA methylase | - |
| C5F72_RS26565 () | 66900..67106 | - | 207 | WP_166513035.1 | hypothetical protein | - |
| C5F72_RS26570 () | 67106..67408 | - | 303 | WP_001666994.1 | antirestriction protein | - |
| C5F72_RS26575 () | 67605..67778 | + | 174 | Protein_81 | DUF4113 domain-containing protein | - |
| C5F72_RS26580 () | 67919..68881 | - | 963 | WP_032200967.1 | ParB/RepB/Spo0J family partition protein | - |
| C5F72_RS26585 () | 68878..70083 | - | 1206 | WP_000817642.1 | Plasmid partition protein A | VF |
| C5F72_RS26590 () | 70458..70670 | + | 213 | WP_000402944.1 | hypothetical protein | - |
| C5F72_RS26595 () | 70844..71095 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| C5F72_RS26600 () | 71092..71379 | + | 288 | WP_001270421.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C5F72_RS26605 () | 71381..71791 | + | 411 | Protein_87 | DDE-type integrase/transposase/recombinase | - |
| C5F72_RS26610 () | 72435..73412 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| C5F72_RS26615 () | 73691..74431 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| C5F72_RS26620 () | 74552..74719 | - | 168 | WP_162841962.1 | transcriptional regulator | - |
| C5F72_RS26625 () | 75171..75868 | - | 698 | Protein_91 | IS1 family transposase IS1X2 | Transposase |
| C5F72_RS26630 () | 75925..76071 | - | 147 | Protein_92 | ester cyclase | - |
| C5F72_RS26635 () | 76080..77069 | - | 990 | WP_001541953.1 | HTH-type transcriptional regulator CdhR | VF |
| C5F72_RS26640 () | 77085..77861 | - | 777 | WP_022631027.1 | MBL fold metallo-hydrolase | - |
| C5F72_RS26645 () | 78237..78934 | - | 698 | Protein_95 | IS1 family transposase IS1X2 | Transposase |
| C5F72_RS26650 () | 79226..79747 | + | 522 | WP_001541951.1 | putative RNA polymerase sigma factor FecI | VF |
| C5F72_RS26655 () | 79744..80697 | + | 954 | WP_001541950.1 | fec operon regulator FecR | - |
| C5F72_RS26660 () | 80784..83108 | + | 2325 | WP_113975883.1 | Fe(3+) dicitrate transport protein FecA | - |
| C5F72_RS26665 () | 83153..84055 | + | 903 | WP_000879160.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| C5F72_RS26670 () | 84052..85050 | + | 999 | WP_000125187.1 | Fe(3+) dicitrate transport system permease protein FecC | VF |
| C5F72_RS26675 () | 85047..86002 | + | 956 | Protein_101 | Fe(3+) dicitrate transport system permease protein FecD | VF |
| C5F72_RS26680 () | 86003..86770 | + | 768 | WP_000175457.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| C5F72_RS26685 () | 87328..87585 | - | 258 | WP_000177057.1 | hypothetical protein | - |
| C5F72_RS26690 () | 87668..87976 | - | 309 | Protein_104 | DDE-type integrase/transposase/recombinase | - |
| C5F72_RS26695 () | 87993..89069 | - | 1077 | WP_000227969.1 | IS110 family transposase ISEc21 | Transposase |
| C5F72_RS26700 () | 89351..89947 | - | 597 | Protein_106 | IS3 family transposase IS911 | Transposase |
| C5F72_RS26705 () | 89957..91108 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5F72_RS26710 () | 91327..92024 | + | 698 | Protein_108 | IS1 family transposase IS1R | Transposase |
| C5F72_RS26715 () | 92018..92326 | - | 309 | WP_025670887.1 | DUF305 domain-containing protein | - |
| C5F72_RS26720 () | 92470..92901 | - | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| C5F72_RS26725 () | 93152..94627 | - | 1476 | WP_000555737.1 | copper/silver sensor histidine kinase SilS | - |
| C5F72_RS26730 () | 94620..95300 | - | 681 | WP_000697969.1 | Transcriptional regulatory protein CusR | VF |
| C5F72_RS26735 () | 95490..96875 | + | 1386 | WP_000475512.1 | Cation efflux system protein CusC | VF |
| C5F72_RS26740 () | 96903..97256 | + | 354 | WP_001246155.1 | cation efflux system protein CusF | - |
| C5F72_RS26745 () | 97370..98662 | + | 1293 | WP_001381488.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| C5F72_RS26750 () | 98673..101819 | + | 3147 | WP_020219104.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| C5F72_RS26755 () | 101906..102346 | + | 441 | WP_000758229.1 | hypothetical protein | - |
| C5F72_RS26760 () | 102444..104921 | + | 2478 | WP_001398208.1 | Ag(+)-translocating P-type ATPase SilP | - |
| C5F72_RS26765 () | 104962..105159 | + | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| C5F72_RS26770 () | 105193..105780 | - | 588 | WP_159376085.1 | Murein DD-endopeptidase MepM | VF |
| C5F72_RS26775 () | 105830..106527 | + | 698 | Protein_121 | IS1 family transposase IS1S | Transposase |
| C5F72_RS26780 () | 106890..109856 | - | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| C5F72_RS26785 () | 109859..110377 | - | 519 | WP_001133513.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| C5F72_RS26790 () | 110436..111140 | + | 705 | WP_001067856.1 | IS6 family transposase IS15DII | Transposase |
| C5F72_RS26795 () | 111150..111707 | + | 558 | WP_077167923.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| C5F72_RS26800 () | 111772..112014 | + | 243 | Protein_126 | IS3 family transposase IS1133 | Transposase |
| C5F72_RS26805 () | 112082..113233 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5F72_RS26810 () | 113330..113740 | + | 411 | WP_077635224.1 | IS3 family transposase | - |
| C5F72_RS26815 () | 114347..115855 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| C5F72_RS26820 () | 115936..116394 | + | 459 | Protein_130 | IS3 family transposase | - |
| C5F72_RS26825 () | 116501..117304 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| C5F72_RS26830 () | 117304..118140 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| C5F72_RS26835 () | 118476..119291 | + | 816 | WP_000018321.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| C5F72_RS26840 () | 119445..120320 | - | 876 | WP_001201005.1 | acyl-CoA--6-aminopenicillanic acid acyl-transferase | - |
| C5F72_RS26845 () | 120390..123275 | - | 2886 | WP_001138082.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| C5F72_RS26850 () | 123401..124015 | + | 615 | WP_000904906.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| C5F72_RS26855 () | 124122..124471 | + | 350 | Protein_137 | IS3 family transposase ISAba14 | Transposase |
| C5F72_RS26860 () | 124534..125294 | + | 761 | WP_085947932.1 | IS5 family transposase ISKpn12 | Transposase |
| C5F72_RS26865 () | 126186..126371 | + | 186 | WP_004197549.1 | hypothetical protein | - |
| C5F72_RS26875 () | 127822..128013 | - | 192 | WP_040234282.1 | hypothetical protein | - |
| C5F72_RS26880 () | 128595..129137 | - | 543 | WP_002063889.1 | AAA family ATPase | - |
| C5F72_RS26885 () | 129150..130010 | - | 861 | WP_000557452.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| C5F72_RS26890 () | 130087..130947 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| C5F72_RS26895 () | 131189..131893 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|