MGE detailed information
MGE type: Genomic_island MGE length: 21339 bp
Accession: NZ_CP026803 Location: 4294225..4315563 Organism: Shigella flexneri strain 89-141 Replicon: chromosome
Accession: NZ_CP026803 Location: 4294225..4315563 Organism: Shigella flexneri strain 89-141 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P88_RS22140 (4290635) | 4290635..4292146 | + | 1512 | WP_001130975.1 | EAL domain-containing protein | - |
| C1P88_RS22145 (4293371) | 4293371..4294527 | - | 1157 | Protein_4235 | IS3 family transposase | - |
| C1P88_RS22155 (4294878) | 4294878..4295801 | + | 924 | WP_234426375.1 | O-antigen ligase family protein | - |
| C1P88_RS22160 (4295801) | 4295801..4296535 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| C1P88_RS22165 (4297003) | 4297003..4297509 | + | 507 | WP_234426374.1 | Chaperone protein caf1M | VF |
| C1P88_RS25655 (4297510) | 4297510..4297764 | + | 255 | WP_000245721.1 | Chaperone protein caf1M | VF |
| C1P88_RS22170 (4297808) | 4297808..4298887 | + | 1080 | WP_005077871.1 | F1 capsule-anchoring protein | VF |
| C1P88_RS22185 (4300462) | 4300462..4301610 | + | 1149 | WP_005077873.1 | F1 capsule-anchoring protein | VF |
| C1P88_RS22190 (4301749) | 4301749..4302261 | + | 513 | WP_000751952.1 | hypothetical protein | - |
| C1P88_RS22195 (4302368) | 4302368..4303129 | - | 762 | WP_171763489.1 | Transcriptional regulatory protein TdiR | VF |
| C1P88_RS22200 (4303376) | 4303376..4304140 | + | 765 | Protein_4245 | winged helix-turn-helix domain-containing protein | - |
| C1P88_RS22205 (4304133) | 4304133..4304609 | + | 477 | WP_171763490.1 | hypothetical protein | - |
| C1P88_RS22210 (4304696) | 4304696..4305694 | - | 999 | Protein_4247 | DUF2776 domain-containing protein | - |
| C1P88_RS22215 (4306111) | 4306111..4307700 | + | 1590 | WP_134799735.1 | DUF4049 domain-containing protein | - |
| C1P88_RS22220 (4307962) | 4307962..4309584 | + | 1623 | WP_005077881.1 | DUF4049 domain-containing protein | - |
| C1P88_RS25660 (4309774) | 4309774..4309887 | + | 114 | WP_001296785.1 | protein YhiY | - |
| C1P88_RS22225 (4309950) | 4309950..4311017 | + | 1068 | WP_000361463.1 | HlyD family secretion protein | - |
| C1P88_RS22230 (4311014) | 4311014..4313749 | + | 2736 | WP_000149092.1 | Ribosome-associated ATPase | VF |
| C1P88_RS22235 (4313749) | 4313749..4314873 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| C1P88_RS22240 (4314932) | 4314932..4315207 | + | 276 | WP_001259385.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| C1P88_RS22245 (4315204) | 4315204..4315563 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| C1P88_RS22250 (4315683) | 4315683..4316084 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| C1P88_RS22255 (4316090) | 4316090..4316896 | - | 807 | WP_000173669.1 | nickel import ATP-binding protein NikE | - |
| C1P88_RS22260 (4316893) | 4316893..4317657 | - | 765 | WP_001136237.1 | nickel import ATP-binding protein NikD | - |
| C1P88_RS22265 (4317657) | 4317657..4318490 | - | 834 | WP_001008975.1 | nickel ABC transporter permease subunit NikC | - |
| C1P88_RS22270 (4318487) | 4318487..4319431 | - | 945 | WP_000947068.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.004 |