MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 135368 bp
Accession: NZ_CP026800 Location: 1..135368 Organism: Shigella flexneri strain NCTC 9728 Replicon: plasmid unnamed
Accession: NZ_CP026800 Location: 1..135368 Organism: Shigella flexneri strain NCTC 9728 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P82_RS22945 () | 3135..3323 | + | 189 | WP_000957853.1 | hypothetical protein | - |
| C1P82_RS22950 () | 3333..4532 | + | 1200 | WP_010921680.1 | IS91 family transposase | - |
| C1P82_RS22960 () | 4709..5553 | + | 845 | Protein_3 | IS5 family transposase ISSfl7 | Transposase |
| C1P82_RS22965 () | 5668..6699 | + | 1032 | WP_004998488.1 | IS630 family transposase IS630 | Transposase |
| C1P82_RS22970 () | 6893..7583 | + | 691 | Protein_5 | IS1 family transposase | - |
| C1P82_RS22975 () | 7600..7779 | - | 180 | Protein_6 | transposase | - |
| C1P82_RS22980 () | 8107..9804 | + | 1698 | WP_010921637.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P82_RS22985 () | 10232..11956 | + | 1725 | WP_010921638.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| C1P82_RS24395 () | 12008..12414 | + | 407 | Protein_9 | IS3 family transposase IS1203 | Transposase |
| C1P82_RS22990 () | 12412..13410 | + | 999 | Protein_10 | IS3 family transposase IS1203 | Transposase |
| C1P82_RS22995 () | 13460..13669 | + | 210 | Protein_11 | peptidoglycan-binding protein | - |
| C1P82_RS23000 () | 13763..13954 | - | 192 | Protein_12 | IS21 family transposase IS100 | Transposase |
| C1P82_RS23005 () | 13995..14492 | - | 498 | Protein_13 | IS66 family transposase ISEc47 | Transposase |
| C1P82_RS23015 () | 14595..15803 | - | 1209 | Protein_14 | IS3 family transposase | - |
| C1P82_RS23020 () | 15983..16717 | + | 735 | Protein_15 | IS21 family transposase IS100kyp | Transposase |
| C1P82_RS23025 () | 17093..18301 | - | 1209 | WP_134807736.1 | IS91 family transposase | - |
| C1P82_RS23030 () | 18282..18554 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P82_RS23040 () | 18721..18840 | - | 120 | Protein_18 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23050 () | 18957..20654 | - | 1698 | WP_010921642.1 | hypothetical protein | VF |
| C1P82_RS23055 () | 20730..20880 | + | 151 | Protein_20 | IS1 family transposase | - |
| C1P82_RS23060 () | 20984..22396 | - | 1413 | WP_134807737.1 | hypothetical protein | VF |
| C1P82_RS23065 () | 22846..22908 | + | 63 | Protein_22 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23070 () | 22929..23150 | - | 222 | Protein_23 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23075 () | 23293..23462 | - | 170 | Protein_24 | HNH endonuclease | - |
| C1P82_RS23085 () | 24690..25163 | - | 474 | WP_005038443.1 | CFA/I fimbrial subunit D | VF |
| C1P82_RS23090 () | 25151..25579 | - | 429 | WP_010921645.1 | hypothetical protein | - |
| C1P82_RS23095 () | 25807..26445 | - | 639 | WP_000502855.1 | ParB N-terminal domain-containing protein | - |
| C1P82_RS23100 () | 26430..26573 | - | 144 | Protein_29 | DUF3440 domain-containing protein | - |
| C1P82_RS23110 () | 28203..28688 | - | 486 | WP_010921647.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P82_RS23115 () | 28676..28960 | - | 285 | WP_011114751.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P82_RS24250 () | 29862..30026 | + | 165 | WP_001346193.1 | hypothetical protein | - |
| C1P82_RS23140 () | 30280..31876 | - | 1597 | Protein_34 | IS66 family transposase ISSfl3 | Transposase |
| C1P82_RS23145 () | 31873..32223 | - | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P82_RS23150 () | 32220..32894 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P82_RS23155 () | 32974..34061 | - | 1088 | Protein_37 | IS3 family transposase IS2 | Transposase |
| C1P82_RS23165 () | 35461..35616 | - | 156 | Protein_39 | IS3 family transposase ISEc48 | Transposase |
| C1P82_RS24255 () | 35731..36369 | - | 639 | WP_010921709.1 | hypothetical protein | VF |
| C1P82_RS23175 () | 36528..36983 | - | 456 | Protein_41 | IS1 family transposase | - |
| C1P82_RS23180 () | 37001..37698 | - | 698 | Protein_42 | IS1 family transposase IS1X2 | Transposase |
| C1P82_RS23185 () | 37758..38708 | + | 951 | Protein_43 | IS66 family transposase ISEc49 | Transposase |
| C1P82_RS23190 () | 39244..39462 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C1P82_RS23195 () | 39464..39769 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C1P82_RS23200 () | 39805..39900 | + | 96 | Protein_46 | transposase domain-containing protein | - |
| C1P82_RS23205 () | 40162..41799 | + | 1638 | WP_000936806.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C1P82_RS23210 () | 42007..42276 | + | 270 | WP_000079956.1 | hypothetical protein | - |
| C1P82_RS24400 () | 42273..42499 | + | 227 | Protein_49 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P82_RS23220 () | 42528..43118 | + | 591 | WP_000705601.1 | Protein kinase OspG | VF |
| C1P82_RS23225 () | 43471..44168 | - | 698 | Protein_51 | IS1 family transposase IS1X2 | Transposase |
| C1P82_RS24260 () | 44233..44517 | + | 285 | Protein_52 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23235 () | 44580..45899 | + | 1320 | WP_005061904.1 | IS4 family transposase IS4 | Transposase |
| C1P82_RS23240 () | 45905..47114 | + | 1210 | Protein_54 | IS3 family transposase | - |
| C1P82_RS24265 () | 47249..47440 | - | 192 | Protein_55 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23250 () | 47438..47762 | + | 325 | Protein_56 | IS3 family transposase | - |
| C1P82_RS23255 () | 47792..50704 | - | 2913 | WP_010921718.1 | hypothetical protein | - |
| C1P82_RS23260 () | 50707..50823 | + | 117 | WP_004996477.1 | hypothetical protein | - |
| C1P82_RS23265 () | 51187..52029 | + | 843 | WP_000931197.1 | polysaccharide deacetylase family protein | - |
| C1P82_RS23270 () | 52032..53120 | + | 1089 | WP_010921719.1 | putative hexosyltransferase CapU | - |
| C1P82_RS23275 () | 53125..54075 | + | 951 | WP_004970430.1 | virulence factor VirK | - |
| C1P82_RS23280 () | 54140..55084 | + | 945 | WP_004996485.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C1P82_RS23285 () | 55238..56161 | - | 924 | Protein_63 | IS630 family transposase IS630 | Transposase |
| C1P82_RS23295 () | 57407..57586 | + | 180 | Protein_65 | hypothetical protein | - |
| C1P82_RS23300 () | 57595..57993 | - | 399 | WP_000911311.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C1P82_RS23305 () | 57993..58220 | - | 228 | WP_000450531.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C1P82_RS23310 () | 58305..58673 | + | 369 | WP_158251021.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1P82_RS23315 () | 58694..63565 | + | 4872 | WP_010921722.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1P82_RS23320 () | 63585..64331 | + | 747 | WP_000205722.1 | conjugal transfer pilus acetylase TraX | - |
| C1P82_RS23325 () | 64386..64946 | + | 561 | WP_031942483.1 | fertility inhibition protein FinO | - |
| C1P82_RS23330 () | 65077..65289 | + | 213 | WP_004971339.1 | ANR family transcriptional regulator | - |
| C1P82_RS23345 () | 65533..65772 | + | 240 | Protein_73 | thermonuclease family protein | - |
| C1P82_RS23355 () | 66986..67249 | + | 264 | Protein_75 | thermonuclease family protein | - |
| C1P82_RS23360 () | 67295..67504 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| C1P82_RS23365 () | 67543..68133 | + | 591 | WP_000766818.1 | DUF2726 domain-containing protein | - |
| C1P82_RS23370 () | 68373..68633 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| C1P82_RS23380 () | 68857..68931 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C1P82_RS23385 () | 68924..69781 | + | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
| C1P82_RS23395 () | 70904..72100 | - | 1197 | WP_134807741.1 | IS91 family transposase | - |
| C1P82_RS23400 () | 72110..72298 | - | 189 | WP_000957853.1 | hypothetical protein | - |
| C1P82_RS23405 () | 72444..72599 | + | 156 | Protein_83 | IS256 family transposase ISEc39 | Transposase |
| C1P82_RS23410 () | 72629..74356 | - | 1728 | WP_031942484.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P82_RS23415 () | 74745..75011 | - | 267 | WP_000957716.1 | hypothetical protein | VF |
| C1P82_RS24405 () | 75158..75301 | - | 144 | Protein_86 | IS1 family transposase | - |
| C1P82_RS24270 () | 75659..75811 | - | 153 | WP_011114782.1 | hypothetical protein | - |
| C1P82_RS23425 () | 75850..76373 | + | 524 | Protein_88 | IS3 family transposase ISSfl11 | Transposase |
| C1P82_RS23430 () | 76416..76754 | - | 339 | Protein_89 | IS3 family transposase IS629 | Transposase |
| C1P82_RS23435 () | 76828..77996 | + | 1169 | WP_134807742.1 | IS3 family transposase IS911 | Transposase |
| C1P82_RS23440 () | 78020..78713 | - | 694 | Protein_91 | hypothetical protein | VF |
| C1P82_RS23445 () | 78769..78921 | + | 153 | Protein_92 | IS3 family transposase | - |
| C1P82_RS24010 () | 79203..79340 | - | 138 | WP_011378983.1 | hypothetical protein | - |
| C1P82_RS23455 () | 80302..81248 | + | 947 | Protein_94 | Outer membrane protease IcsP | VF |
| C1P82_RS24275 () | 81217..81384 | - | 168 | WP_000165219.1 | IS3 family transposase IS629 | Transposase |
| C1P82_RS23465 () | 81810..82182 | - | 373 | Protein_96 | IS3 family transposase IS2 | Transposase |
| C1P82_RS23475 () | 82426..82545 | + | 120 | Protein_97 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
| C1P82_RS23480 () | 82795..83661 | + | 867 | WP_001046939.1 | hypothetical protein | VF |
| C1P82_RS23485 () | 83990..84730 | + | 741 | WP_010921592.1 | PAP2 family phosphatase PhoN2 | - |
| C1P82_RS24015 () | 85082..86534 | - | 1453 | Protein_100 | hypothetical protein | VF |
| C1P82_RS23505 () | 86901..87419 | - | 519 | Protein_101 | IS66 family transposase IS679 | Transposase |
| C1P82_RS23510 () | 87436..88121 | - | 686 | Protein_102 | IS3 family transposase ISSfl11 | Transposase |
| C1P82_RS23515 () | 88532..88729 | + | 198 | WP_005081318.1 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
| C1P82_RS23520 () | 88811..90520 | - | 1710 | WP_031942474.1 | hypothetical protein | VF |
| C1P82_RS23525 () | 90952..91671 | - | 720 | WP_010921598.1 | Phosphothreonine lyase OspF | VF |
| C1P82_RS23530 () | 91796..92352 | - | 557 | Protein_106 | ISL3 family transposase ISKox3 | Transposase |
| C1P82_RS23535 () | 92336..92594 | + | 259 | Protein_107 | IS1 family transposase | - |
| C1P82_RS23540 () | 92703..93281 | - | 579 | WP_000868563.1 | hypothetical protein | - |
| C1P82_RS23545 () | 93704..93941 | - | 238 | Protein_109 | ATP-binding protein | - |
| C1P82_RS23550 () | 94128..94557 | - | 430 | Protein_110 | IS91 family transposase IS91 | Transposase |
| C1P82_RS24020 () | 94635..94922 | + | 288 | WP_001082155.1 | hypothetical protein | - |
| C1P82_RS24280 () | 94953..95234 | + | 282 | Protein_112 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23565 () | 95248..96594 | - | 1347 | WP_005104824.1 | IS4 family transposase IS4 | Transposase |
| C1P82_RS23570 () | 96664..97038 | + | 375 | Protein_114 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23575 () | 97038..97385 | + | 348 | WP_000622995.1 | IS66 family transposase ISCro1 | Transposase |
| C1P82_RS23580 () | 97405..98634 | + | 1230 | Protein_116 | IS66 family transposase IS679 | Transposase |
| C1P82_RS23585 () | 98638..98797 | + | 160 | Protein_117 | IS3 family transposase | - |
| C1P82_RS23590 () | 99386..99684 | + | 299 | Protein_118 | IS256 family transposase IS1414 | Transposase |
| C1P82_RS23595 () | 99766..99903 | + | 138 | Protein_119 | IS630 family transposase | - |
| C1P82_RS24285 () | 100274..100950 | + | 677 | Protein_120 | hypothetical protein | VF |
| C1P82_RS23930 () | 101274..101384 | + | 111 | Protein_121 | IS3 family transposase | - |
| C1P82_RS24290 () | 101462..101776 | + | 315 | WP_011114726.1 | hypothetical protein | - |
| C1P82_RS23625 () | 102058..102624 | + | 567 | WP_000901798.1 | hypothetical protein | VF |
| C1P82_RS24410 () | 102886..103008 | - | 123 | Protein_124 | transposase domain-containing protein | - |
| C1P82_RS23635 () | 103151..103705 | + | 555 | Protein_125 | IS3 family transposase IS3H | Transposase |
| C1P82_RS23640 () | 104044..104405 | + | 362 | Protein_126 | IS1 family transposase IS1N | Transposase |
| C1P82_RS23650 () | 104492..105169 | + | 678 | Protein_127 | IS21 family transposase IS100kyp | Transposase |
| C1P82_RS23655 () | 105195..106388 | - | 1194 | WP_005064872.1 | IS4 family transposase ISSfl1 | Transposase |
| C1P82_RS23660 () | 106468..106824 | + | 357 | Protein_129 | IS21 family transposase IS100kyp | Transposase |
| C1P82_RS23665 () | 106821..107602 | + | 782 | Protein_130 | IS21 family transposase IS100kyp | Transposase |
| C1P82_RS23670 () | 107669..108007 | + | 339 | Protein_131 | IS1 family transposase | - |
| C1P82_RS23680 () | 108329..109528 | + | 1200 | WP_000200287.1 | AAA family ATPase | - |
| C1P82_RS23685 () | 109528..110508 | + | 981 | WP_000431558.1 | ParB/RepB/Spo0J family partition protein | - |
| C1P82_RS23690 () | 110764..111242 | + | 479 | Protein_134 | IS110 family transposase ISPko7 | Transposase |
| C1P82_RS23695 () | 111272..111451 | - | 180 | Protein_135 | transposase domain-containing protein | - |
| C1P82_RS23700 () | 111534..112712 | - | 1179 | WP_075332577.1 | group II intron reverse transcriptase/maturase | - |
| C1P82_RS23710 () | 113238..113417 | - | 180 | Protein_137 | transposase | - |
| C1P82_RS23715 () | 113454..114663 | - | 1210 | Protein_138 | IS3 family transposase | - |
| C1P82_RS23720 () | 114720..115016 | - | 297 | Protein_139 | IS3 family transposase IS150 | Transposase |
| C1P82_RS23725 () | 115132..115320 | + | 189 | WP_000957853.1 | hypothetical protein | - |
| C1P82_RS23730 () | 115330..116529 | + | 1200 | WP_010921680.1 | IS91 family transposase | - |
| C1P82_RS23735 () | 116702..117456 | - | 755 | Protein_142 | IS3 family transposase IS150 | Transposase |
| C1P82_RS23740 () | 117455..117826 | + | 372 | Protein_143 | IS21 family transposase IS100 | Transposase |
| C1P82_RS23745 () | 117819..118607 | - | 789 | WP_005116773.1 | AraC family invasion system transcriptional regulator VirF | - |
| C1P82_RS23750 () | 119036..119437 | + | 402 | Protein_145 | IS3 family transposase ISEc48 | Transposase |
| C1P82_RS23755 () | 119619..119885 | + | 267 | WP_000957712.1 | hypothetical protein | VF |
| C1P82_RS23760 () | 120084..120772 | + | 689 | Protein_147 | IS1 family transposase IS1X2 | Transposase |
| C1P82_RS23765 () | 121033..122229 | - | 1197 | WP_010921623.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P82_RS23770 () | 122565..124256 | + | 1692 | WP_134807744.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P82_RS23775 () | 124308..125412 | + | 1105 | Protein_150 | IS3 family transposase | - |
| C1P82_RS23780 () | 125455..125978 | - | 524 | Protein_151 | IS3 family transposase ISSfl11 | Transposase |
| C1P82_RS23785 () | 126046..126528 | - | 483 | WP_000405245.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P82_RS23790 () | 126519..126821 | - | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P82_RS23800 () | 127093..127365 | + | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P82_RS23805 () | 127346..128554 | + | 1209 | WP_134807736.1 | IS91 family transposase | - |
| C1P82_RS23935 () | 128726..128854 | + | 129 | Protein_156 | IS5 family transposase ISSfl7 | Transposase |
| C1P82_RS23820 () | 129003..130457 | - | 1455 | WP_010921627.1 | hypothetical protein | VF |
| C1P82_RS23825 () | 130861..131504 | + | 644 | Protein_158 | IS1 family transposase IS1X2 | Transposase |
| C1P82_RS23830 () | 131530..132739 | + | 1210 | Protein_159 | IS3 family transposase | - |
| C1P82_RS23835 () | 132783..133193 | + | 411 | Protein_160 | IS66 family transposase ISEc23 | Transposase |
| C1P82_RS23840 () | 133225..133838 | + | 614 | Protein_161 | IS21 family transposase ISEc10 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|