MGE detailed information
MGE type: Prophage MGE length: 48527 bp
Accession: NZ_CP026799 Location: 905846..954372 Organism: Shigella flexneri strain NCTC 9728 Replicon: chromosome
Accession: NZ_CP026799 Location: 905846..954372 Organism: Shigella flexneri strain NCTC 9728 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P82_RS04610 () | 901457..901819 | + | 363 | WP_000108294.1 | 6-carboxytetrahydropterin synthase QueD | - |
| C1P82_RS04615 () | 901897..903168 | + | 1272 | WP_005070644.1 | FAD-dependent oxidoreductase | - |
| C1P82_RS04620 () | 903159..903419 | + | 261 | WP_000109522.1 | ferredoxin family protein | - |
| C1P82_RS04630 () | 903725..903811 | - | 87 | Protein_887 | transposase | - |
| C1P82_RS04635 () | 903903..905666 | + | 1764 | WP_000801164.1 | E3 ubiquitin--protein ligase | - |
| C1P82_RS04645 () | 905846..906469 | - | 624 | WP_134807585.1 | DUF4376 domain-containing protein | - |
| C1P82_RS04650 () | 906420..907835 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P82_RS04655 () | 907899..908498 | - | 600 | WP_001230369.1 | hypothetical protein | VF |
| C1P82_RS04660 () | 908566..912045 | - | 3480 | WP_000515521.1 | host specificity protein J | - |
| C1P82_RS04665 () | 912106..912699 | - | 594 | WP_165850933.1 | tail assembly protein | - |
| C1P82_RS04670 () | 912645..913388 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| C1P82_RS04675 () | 913393..914091 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| C1P82_RS24300 () | 914086..914334 | - | 249 | Protein_896 | phage tail protein | - |
| C1P82_RS04680 () | 914334..917376 | - | 3043 | Protein_897 | phage tail tape measure protein | - |
| C1P82_RS04685 () | 917348..917677 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| C1P82_RS04690 () | 917686..918072 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| C1P82_RS04695 () | 918131..918871 | - | 741 | WP_000211137.1 | Ig-like domain-containing protein | - |
| C1P82_RS04700 () | 918882..919283 | - | 402 | WP_001079402.1 | phage minor tail U family protein | - |
| C1P82_RS04705 () | 919280..919861 | - | 582 | WP_000677139.1 | phage tail protein | - |
| C1P82_RS04710 () | 919871..920224 | - | 354 | WP_000348592.1 | tail attachment protein | - |
| C1P82_RS04715 () | 920236..920622 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| C1P82_RS04720 () | 920674..921702 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| C1P82_RS04725 () | 921760..922107 | - | 348 | WP_000256830.1 | head decoration protein | - |
| C1P82_RS04730 () | 922144..923649 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| C1P82_RS04735 () | 923639..925232 | - | 1594 | Protein_908 | phage portal protein | - |
| C1P82_RS04740 () | 925229..925432 | - | 204 | WP_000259004.1 | head-tail joining protein | - |
| C1P82_RS04745 () | 925416..927344 | - | 1929 | WP_001026849.1 | phage terminase large subunit family protein | - |
| C1P82_RS04750 () | 927316..927624 | - | 309 | Protein_911 | terminase small subunit | - |
| C1P82_RS04755 () | 927667..928706 | - | 1040 | Protein_912 | IS3 family transposase ISSd1 | Transposase |
| C1P82_RS04760 () | 928762..929971 | + | 1210 | Protein_913 | IS3 family transposase IS629 | Transposase |
| C1P82_RS04765 () | 930013..930132 | - | 120 | Protein_914 | IS3 family transposase ISSfl10 | Transposase |
| C1P82_RS04770 () | 930189..930401 | - | 213 | WP_005107083.1 | hypothetical protein | - |
| C1P82_RS24070 () | 930797..930973 | + | 177 | WP_001205133.1 | hypothetical protein | - |
| C1P82_RS04785 () | 931281..931589 | - | 309 | WP_001346234.1 | hypothetical protein | - |
| C1P82_RS04790 () | 931765..932921 | + | 1157 | WP_094096554.1 | IS3 family transposase ISSd1 | Transposase |
| C1P82_RS04795 () | 932965..933144 | - | 180 | Protein_919 | Rha family transcriptional regulator | - |
| C1P82_RS24075 () | 933347..933814 | - | 468 | WP_000092287.1 | lysis protein | - |
| C1P82_RS04805 () | 933811..934344 | - | 534 | WP_001274722.1 | lysozyme | - |
| C1P82_RS04810 () | 934410..935039 | - | 630 | WP_005083349.1 | hypothetical protein | - |
| C1P82_RS04815 () | 935043..935258 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| C1P82_RS04840 () | 936061..936441 | - | 381 | WP_134807729.1 | antitermination protein | - |
| C1P82_RS04845 () | 936434..936634 | - | 201 | WP_000111769.1 | protein ninH | - |
| C1P82_RS04850 () | 936729..936986 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| C1P82_RS04855 () | 936983..938374 | - | 1392 | WP_000211321.1 | replicative DNA helicase | - |
| C1P82_RS04860 () | 938371..939249 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| C1P82_RS04865 () | 939260..940168 | - | 909 | WP_001247829.1 | hypothetical protein | - |
| C1P82_RS04870 () | 940155..940388 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| C1P82_RS04875 () | 940385..941401 | - | 1017 | Protein_931 | Rha family transcriptional regulator | - |
| C1P82_RS04880 () | 941327..941596 | + | 270 | WP_130862220.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C1P82_RS04885 () | 941586..941894 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| C1P82_RS04890 () | 941936..942112 | - | 177 | WP_024260406.1 | NinE family protein | - |
| C1P82_RS04895 () | 942109..942519 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| C1P82_RS04900 () | 942516..942794 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| C1P82_RS04905 () | 942869..945775 | - | 2907 | WP_134807586.1 | toprim domain-containing protein | - |
| C1P82_RS24080 () | 945883..945999 | - | 117 | Protein_938 | helix-turn-helix domain-containing protein | - |
| C1P82_RS04915 () | 946051..947207 | + | 1157 | WP_134807587.1 | IS3 family transposase ISSd1 | Transposase |
| C1P82_RS04920 () | 947308..948189 | + | 882 | WP_024219169.1 | hypothetical protein ; Integrase | Integrase |
| C1P82_RS04925 () | 948288..948863 | + | 576 | Protein_941 | glycerol-3-phosphate responsive antiterminator | - |
| C1P82_RS04930 () | 949011..949871 | - | 861 | WP_005051545.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| C1P82_RS04935 () | 949868..950647 | - | 780 | WP_005051549.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| C1P82_RS04940 () | 950625..952034 | - | 1410 | WP_000147685.1 | MFS transporter | - |
| C1P82_RS04945 () | 952056..952850 | - | 795 | WP_024260296.1 | FAD-binding oxidoreductase | - |
| C1P82_RS04950 () | 952965..953662 | + | 698 | Protein_946 | IS1 family transposase IS1X1 | Transposase |
| C1P82_RS04955 () | 953701..954372 | - | 672 | WP_001199973.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| C1P82_RS04965 () | 954665..955537 | + | 873 | WP_001268465.1 | YgcG family protein | - |
| C1P82_RS04970 () | 955597..956895 | - | 1299 | WP_000036723.1 | phosphopyruvate hydratase | - |
| C1P82_RS04975 () | 956983..958620 | - | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120361 | NZ_CP037923 | 407819..456347 | 0 |