MGE detailed information
MGE type: Genomic_island MGE length: 21036 bp
Accession: NZ_CP026799 Location: 120411..141446 Organism: Shigella flexneri strain NCTC 9728 Replicon: chromosome
Accession: NZ_CP026799 Location: 120411..141446 Organism: Shigella flexneri strain NCTC 9728 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P82_RS00595 () | 115523..115858 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| C1P82_RS00600 () | 115929..117428 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| C1P82_RS00605 () | 117660..118859 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| C1P82_RS00610 () | 119388..120085 | + | 698 | Protein_114 | IS1 family transposase | - |
| C1P82_RS00615 () | 120103..120395 | - | 293 | Protein_115 | transposase | - |
| C1P82_RS00620 () | 120411..121685 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| C1P82_RS00625 () | 121685..122419 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| C1P82_RS00630 () | 122887..123648 | + | 762 | WP_005090407.1 | hypothetical protein | VF |
| C1P82_RS00635 () | 123692..124756 | + | 1065 | WP_158251016.1 | hypothetical protein | VF |
| C1P82_RS00640 () | 124767..125054 | + | 288 | WP_077696389.1 | hypothetical protein | VF |
| C1P82_RS00650 () | 126345..127493 | + | 1149 | WP_005104238.1 | hypothetical protein | VF |
| C1P82_RS00655 () | 127644..128144 | + | 501 | WP_171764207.1 | hypothetical protein | - |
| C1P82_RS00660 () | 128251..129012 | - | 762 | WP_011069549.1 | Transcriptional regulatory protein RcsB | VF |
| C1P82_RS00665 () | 129258..130022 | + | 765 | WP_000442144.1 | winged helix-turn-helix domain-containing protein | - |
| C1P82_RS00670 () | 130015..130491 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| C1P82_RS00675 () | 130578..131609 | - | 1032 | Protein_127 | DUF2776 family protein | - |
| C1P82_RS00680 () | 131994..133583 | + | 1590 | WP_024260312.1 | DUF4049 domain-containing protein | - |
| C1P82_RS00685 () | 133845..135467 | + | 1623 | WP_005106002.1 | DUF4049 domain-containing protein | - |
| C1P82_RS00690 () | 135833..136900 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| C1P82_RS00695 () | 136897..139632 | + | 2736 | WP_000149171.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C1P82_RS00700 () | 139632..140756 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| C1P82_RS00705 () | 140815..141090 | + | 276 | WP_001259385.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| C1P82_RS00710 () | 141087..141446 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| C1P82_RS00715 () | 141566..141967 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| C1P82_RS00720 () | 141973..142779 | - | 807 | WP_000173670.1 | nickel import ATP-binding protein NikE | - |
| C1P82_RS00725 () | 142776..143540 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| C1P82_RS00730 () | 143540..144373 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| C1P82_RS00735 () | 144370..145314 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |