MGE detailed information
MGE type: Genomic_island MGE length: 19763 bp
Accession: NZ_CP026793 Location: 1493390..1513152 Organism: Shigella flexneri strain 74-1170 Replicon: chromosome
Accession: NZ_CP026793 Location: 1493390..1513152 Organism: Shigella flexneri strain 74-1170 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P81_RS07435 (1489522) | 1489522..1490466 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| C1P81_RS07440 (1490463) | 1490463..1491296 | + | 834 | WP_134799818.1 | nickel ABC transporter permease subunit NikC | - |
| C1P81_RS07445 (1491296) | 1491296..1492060 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| C1P81_RS07450 (1492057) | 1492057..1492863 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| C1P81_RS07455 (1492869) | 1492869..1493270 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| C1P81_RS07460 (1493390) | 1493390..1493749 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| C1P81_RS07465 (1493746) | 1493746..1494021 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| C1P81_RS07470 (1494080) | 1494080..1495204 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| C1P81_RS07475 (1495204) | 1495204..1497939 | - | 2736 | WP_000149173.1 | ribosome-associated ATPase/putative transporter RbbA | - |
| C1P81_RS07480 (1497936) | 1497936..1499003 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| C1P81_RS26715 (1499066) | 1499066..1499179 | - | 114 | WP_001296785.1 | protein YhiY | - |
| C1P81_RS07485 (1499369) | 1499369..1500991 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| C1P81_RS07490 (1501253) | 1501253..1502842 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| C1P81_RS07495 (1503260) | 1503260..1504258 | + | 999 | Protein_1438 | DUF2776 domain-containing protein | - |
| C1P81_RS07500 (1504345) | 1504345..1504821 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| C1P81_RS07505 (1504814) | 1504814..1505578 | - | 765 | WP_000442141.1 | winged helix-turn-helix domain-containing protein | - |
| C1P81_RS07510 (1505824) | 1505824..1506585 | + | 762 | WP_011069549.1 | LuxR C-terminal-related transcriptional regulator | - |
| C1P81_RS07515 (1506692) | 1506692..1507204 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| C1P81_RS07520 (1507343) | 1507343..1508491 | - | 1149 | WP_005052604.1 | fimbria/pilus outer membrane usher protein | - |
| C1P81_RS07525 (1508583) | 1508583..1509811 | + | 1229 | WP_094081542.1 | IS3-like element IS2 family transposase | - |
| C1P81_RS07530 (1509782) | 1509782..1510048 | - | 267 | WP_071818670.1 | fimbria/pilus outer membrane usher protein | - |
| C1P81_RS07535 (1510066) | 1510066..1511145 | - | 1080 | WP_005052551.1 | fimbria/pilus outer membrane usher protein | - |
| C1P81_RS07540 (1511189) | 1511189..1511950 | - | 762 | WP_005090407.1 | fimbria/pilus periplasmic chaperone | - |
| C1P81_RS07545 (1512418) | 1512418..1513152 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| C1P81_RS07550 (1513152) | 1513152..1514306 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| C1P81_RS07555 (1514442) | 1514442..1514734 | + | 293 | Protein_1450 | transposase | - |
| C1P81_RS07570 (1515978) | 1515978..1517177 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |