MGE detailed information
MGE type: Prophage MGE length: 16030 bp
Accession: NZ_CP026792 Location: 2539693..2555722 Organism: Shigella flexneri strain 61-4982 Replicon: chromosome
Accession: NZ_CP026792 Location: 2539693..2555722 Organism: Shigella flexneri strain 61-4982 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P80_RS13280 () | 2536206..2536952 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C1P80_RS13285 () | 2537041..2537727 | + | 687 | WP_005127032.1 | DNA-binding transcriptional regulator YdfH | - |
| C1P80_RS13290 () | 2537905..2538108 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C1P80_RS13295 () | 2538144..2539604 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| C1P80_RS13300 () | 2539693..2540712 | - | 1020 | Protein_2442 | MHS family MFS transporter YdfJ | - |
| C1P80_RS13305 () | 2540774..2541930 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| C1P80_RS13310 () | 2541955..2542134 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| C1P80_RS24485 () | 2542284..2542445 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| C1P80_RS13315 () | 2542442..2542630 | - | 189 | WP_000874243.1 | DUF1737 domain-containing protein | - |
| C1P80_RS13320 () | 2542890..2543225 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| C1P80_RS13325 () | 2543506..2543614 | - | 109 | Protein_2448 | DUF3927 family protein | - |
| C1P80_RS13345 () | 2544535..2545356 | - | 822 | WP_000762884.1 | antitermination protein | - |
| C1P80_RS13350 () | 2545371..2545727 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P80_RS13355 () | 2545740..2546789 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| C1P80_RS13360 () | 2546791..2547069 | - | 279 | Protein_2452 | hypothetical protein | - |
| C1P80_RS13365 () | 2547136..2547387 | - | 252 | WP_000980987.1 | hypothetical protein | - |
| C1P80_RS13370 () | 2547605..2547760 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C1P80_RS13375 () | 2547832..2548119 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C1P80_RS13380 () | 2548119..2548358 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C1P80_RS13385 () | 2548383..2548688 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| C1P80_RS13390 () | 2548685..2549563 | - | 879 | Protein_2458 | IS3 family transposase IS600 | Transposase |
| C1P80_RS13395 () | 2549581..2550278 | - | 698 | Protein_2459 | IS1 family transposase IS1X2 | Transposase |
| C1P80_RS13400 () | 2550335..2550763 | + | 429 | Protein_2460 | 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase | VF |
| C1P80_RS13405 () | 2551097..2553376 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| C1P80_RS13410 () | 2553624..2553827 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| C1P80_RS13415 () | 2553895..2554656 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| C1P80_RS13420 () | 2555058..2555225 | + | 168 | WP_005062520.1 | hypothetical protein | - |
| C1P80_RS13425 () | 2555219..2555916 | - | 698 | Protein_2465 | IS1 family transposase IS1X2 | Transposase |
| C1P80_RS13430 () | 2555950..2556450 | - | 501 | WP_000284792.1 | cupin domain-containing protein | - |
| C1P80_RS13435 () | 2556766..2557530 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| C1P80_RS13440 () | 2557550..2558488 | + | 939 | Protein_2468 | electron transfer flavoprotein subunit alpha | - |
| C1P80_RS13445 () | 2558544..2559833 | + | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| C1P80_RS13450 () | 2559830..2560123 | + | 294 | WP_000081083.1 | ferredoxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.006 |