MGE detailed information
MGE type: Prophage MGE length: 18796 bp
Accession: NZ_CP026776 Location: 734716..753511 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Accession: NZ_CP026776 Location: 734716..753511 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P84_RS03965 (731229) | 731229..731975 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C1P84_RS03970 (732064) | 732064..732750 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| C1P84_RS03975 (732928) | 732928..733131 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C1P84_RS03980 (733167) | 733167..734627 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| C1P84_RS03985 (734716) | 734716..735735 | - | 1020 | Protein_751 | MHS family MFS transporter YdfJ | - |
| C1P84_RS03990 (735797) | 735797..736953 | + | 1157 | WP_128599137.1 | IS3 family transposase IS600 | Transposase |
| C1P84_RS03995 (736978) | 736978..737157 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| C1P84_RS23270 (737307) | 737307..737468 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| C1P84_RS04000 (737468) | 737468..737653 | - | 186 | Protein_755 | DUF1737 domain-containing protein | - |
| C1P84_RS04005 (737913) | 737913..738248 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| C1P84_RS04010 (738529) | 738529..738637 | - | 109 | Protein_757 | DUF3927 family protein | - |
| C1P84_RS04030 (739558) | 739558..740379 | - | 822 | WP_000762884.1 | antitermination protein | - |
| C1P84_RS04035 (740394) | 740394..740750 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P84_RS04040 (740763) | 740763..741812 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| C1P84_RS04045 (741814) | 741814..742092 | - | 279 | Protein_761 | hypothetical protein | - |
| C1P84_RS04050 (742195) | 742195..742410 | - | 216 | WP_000980986.1 | hypothetical protein | - |
| C1P84_RS04055 (742628) | 742628..742783 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C1P84_RS04060 (742855) | 742855..743142 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C1P84_RS04065 (743142) | 743142..743381 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C1P84_RS04070 (743406) | 743406..743711 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| C1P84_RS04075 (743708) | 743708..744586 | - | 879 | Protein_767 | IS3 family transposase ISSd1 | Transposase |
| C1P84_RS04085 (745358) | 745358..745786 | + | 429 | Protein_769 | Type 1 fimbrin D-mannose specific adhesin | VF |
| C1P84_RS04090 (746120) | 746120..748399 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| C1P84_RS04095 (748647) | 748647..748850 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| C1P84_RS04100 (748918) | 748918..749679 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| C1P84_RS04105 (750081) | 750081..750227 | + | 147 | Protein_773 | sulfatase | - |
| C1P84_RS04115 (750994) | 750994..751473 | - | 480 | Protein_775 | cupin domain-containing protein | - |
| C1P84_RS04120 (751789) | 751789..752553 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| C1P84_RS04125 (752573) | 752573..753511 | + | 939 | Protein_777 | electron transfer flavoprotein subunit alpha | - |
| C1P84_RS04130 (753567) | 753567..754856 | + | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| C1P84_RS04135 (754853) | 754853..755146 | + | 294 | WP_000081083.1 | ferredoxin family protein | - |
| C1P84_RS04140 (755203) | 755203..756849 | + | 1647 | WP_005050037.1 | medium-chain fatty-acid--CoA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.01 |