MGE detailed information
MGE type: Genomic_island MGE length: 21814 bp
Accession: NZ_CP026776 Location: 3273790..3295603 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Accession: NZ_CP026776 Location: 3273790..3295603 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P84_RS16870 (3268902) | 3268902..3269237 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| C1P84_RS16875 (3269308) | 3269308..3270807 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| C1P84_RS16880 (3271039) | 3271039..3272238 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| C1P84_RS16885 (3272767) | 3272767..3273464 | + | 698 | WP_227804280.1 | IS1 family transposase | - |
| C1P84_RS16890 (3273482) | 3273482..3273774 | - | 293 | Protein_3221 | transposase | - |
| C1P84_RS16895 (3273790) | 3273790..3275064 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| C1P84_RS16900 (3275064) | 3275064..3275738 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| C1P84_RS16905 (3276266) | 3276266..3277027 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| C1P84_RS16910 (3277071) | 3277071..3278150 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| C1P84_RS16925 (3279725) | 3279725..3280765 | + | 1041 | WP_005065168.1 | F1 capsule-anchoring protein | VF |
| C1P84_RS16930 (3280816) | 3280816..3281513 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| C1P84_RS23430 (3281531) | 3281531..3281650 | + | 120 | Protein_3229 | fimbrial biogenesis outer membrane usher protein | - |
| C1P84_RS16940 (3281789) | 3281789..3282301 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| C1P84_RS16945 (3282408) | 3282408..3283169 | - | 762 | WP_075332712.1 | Transcriptional regulatory protein TdiR | VF |
| C1P84_RS16950 (3283415) | 3283415..3284179 | + | 765 | WP_000442142.1 | winged helix-turn-helix domain-containing protein | - |
| C1P84_RS16955 (3284172) | 3284172..3284648 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| C1P84_RS16960 (3284735) | 3284735..3285733 | - | 999 | Protein_3234 | DUF2776 domain-containing protein | - |
| C1P84_RS16965 (3286151) | 3286151..3287740 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| C1P84_RS16970 (3288002) | 3288002..3289624 | + | 1623 | WP_005065086.1 | DUF4049 domain-containing protein | - |
| C1P84_RS23885 (3289814) | 3289814..3289927 | + | 114 | WP_001296785.1 | protein YhiY | - |
| C1P84_RS16975 (3289990) | 3289990..3291057 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| C1P84_RS16980 (3291054) | 3291054..3293789 | + | 2736 | WP_000149172.1 | Ribosome-associated ATPase | VF |
| C1P84_RS16985 (3293789) | 3293789..3294913 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| C1P84_RS16990 (3294972) | 3294972..3295247 | + | 276 | WP_025760846.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| C1P84_RS16995 (3295244) | 3295244..3295603 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| C1P84_RS17000 (3295723) | 3295723..3296124 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| C1P84_RS17005 (3296130) | 3296130..3296936 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| C1P84_RS17010 (3296933) | 3296933..3297697 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| C1P84_RS17015 (3297697) | 3297697..3298530 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| C1P84_RS17020 (3298527) | 3298527..3299471 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |