MGE detailed information
MGE type: IScluster/Tn MGE length: 43350 bp
Accession: NZ_CP026763 Location: 11987..55336 Organism: Shigella boydii strain NCTC 9850 Replicon: plasmid unnamed
Accession: NZ_CP026763 Location: 11987..55336 Organism: Shigella boydii strain NCTC 9850 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P50_RS24225 () | 8226..8519 | - | 294 | WP_171548087.1 | relaxase domain-containing protein | - |
| C1P50_RS24230 () | 8723..8950 | + | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C1P50_RS24235 () | 8950..9348 | + | 399 | WP_000911319.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C1P50_RS24240 () | 9357..11545 | - | 2189 | Protein_10 | type IV conjugative transfer system coupling protein TraD | - |
| C1P50_RS24245 () | 11793..12490 | + | 698 | Protein_11 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS24250 () | 12506..13177 | + | 672 | Protein_12 | IS630 family transposase IS630 | Transposase |
| C1P50_RS24255 () | 13332..14276 | - | 945 | WP_012421740.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C1P50_RS24260 () | 14341..15291 | - | 951 | WP_012421771.1 | virulence factor VirK | - |
| C1P50_RS24265 () | 15296..16384 | - | 1089 | WP_005027207.1 | putative hexosyltransferase CapU | - |
| C1P50_RS24270 () | 16387..17229 | - | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| C1P50_RS24275 () | 17593..17709 | - | 117 | WP_004996477.1 | hypothetical protein | - |
| C1P50_RS24280 () | 17916..18613 | + | 698 | Protein_18 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS24285 () | 18628..19113 | - | 486 | WP_000705603.1 | Protein kinase OspG | VF |
| C1P50_RS25670 () | 19142..19368 | - | 227 | Protein_20 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P50_RS24295 () | 19365..19634 | - | 270 | WP_000079956.1 | hypothetical protein | - |
| C1P50_RS24300 () | 19842..21479 | - | 1638 | WP_134795474.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C1P50_RS24305 () | 21722..21817 | - | 96 | Protein_23 | transposase domain-containing protein | - |
| C1P50_RS24310 () | 21853..22158 | - | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C1P50_RS24315 () | 22160..22378 | - | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C1P50_RS24325 () | 22971..23243 | + | 273 | WP_012421738.1 | hypothetical protein | - |
| C1P50_RS25675 () | 24584..25027 | - | 444 | WP_201797260.1 | hypothetical protein | - |
| C1P50_RS24340 () | 25310..25525 | - | 216 | Protein_29 | IS3 family transposase IS600 | Transposase |
| C1P50_RS24350 () | 25888..26637 | + | 750 | WP_000828661.1 | phosphatase PAP2 family protein | - |
| C1P50_RS24355 () | 26809..27653 | - | 845 | Protein_31 | IS5 family transposase ISSfl7 | Transposase |
| C1P50_RS24360 () | 27699..28064 | - | 366 | WP_073691780.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C1P50_RS24365 () | 28157..29385 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P50_RS24370 () | 29504..29899 | - | 396 | WP_000445931.1 | plasmid partitioning/stability family protein | - |
| C1P50_RS24375 () | 29899..30858 | - | 960 | WP_000921951.1 | plasmid segregation protein ParM | - |
| C1P50_RS24395 () | 31877..32916 | - | 1040 | Protein_36 | IS3 family transposase | - |
| C1P50_RS24400 () | 32970..34183 | + | 1214 | Protein_37 | IS3 family transposase IS629 | Transposase |
| C1P50_RS24405 () | 34227..34358 | - | 132 | Protein_38 | IS3 family transposase IS911 | Transposase |
| C1P50_RS24410 () | 34430..34720 | + | 291 | Protein_39 | reverse transcriptase | - |
| C1P50_RS24415 () | 34794..34913 | + | 120 | Protein_40 | transposase domain-containing protein | - |
| C1P50_RS24420 () | 34953..35261 | - | 309 | Protein_41 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS24425 () | 35298..36836 | - | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| C1P50_RS24430 () | 36885..37232 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C1P50_RS24435 () | 37229..37609 | - | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C1P50_RS24440 () | 37703..38143 | + | 441 | Protein_45 | IS21 family transposase IS100kyp | Transposase |
| C1P50_RS24445 () | 38335..39531 | + | 1197 | WP_134795475.1 | IS110 family transposase ISEc20 | Transposase |
| C1P50_RS24450 () | 39581..40418 | - | 838 | Protein_47 | IS4 family transposase ISEc13 | Transposase |
| C1P50_RS25680 () | 40401..40742 | - | 342 | Protein_48 | IS4 family transposase ISEc13 | Transposase |
| C1P50_RS24455 () | 40857..41657 | - | 801 | Protein_49 | IS3 family transposase ISKpn38 | Transposase |
| C1P50_RS24470 () | 43195..44649 | - | 1455 | WP_000701115.1 | hypothetical protein | VF |
| C1P50_RS24480 () | 45018..46227 | - | 1210 | Protein_52 | IS3 family transposase IS629 | Transposase |
| C1P50_RS24485 () | 46279..48003 | - | 1725 | WP_012421703.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| C1P50_RS24490 () | 48431..50128 | - | 1698 | WP_012421752.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P50_RS24495 () | 50457..50636 | + | 180 | Protein_55 | transposase | - |
| C1P50_RS24500 () | 50653..51343 | - | 691 | Protein_56 | IS1 family transposase | - |
| C1P50_RS24505 () | 51537..52568 | - | 1032 | WP_004998488.1 | IS630 family transposase IS630 | Transposase |
| C1P50_RS24510 () | 52683..53527 | - | 845 | Protein_58 | IS5 family transposase ISSfl7 | Transposase |
| C1P50_RS24520 () | 53704..53994 | - | 291 | Protein_59 | IS91 family transposase ISSbo1 | Transposase |
| C1P50_RS24525 () | 54008..55354 | - | 1347 | WP_000483764.1 | IS4 family transposase IS4 | Transposase |
| C1P50_RS24530 () | 55421..55636 | - | 216 | Protein_61 | transposase | - |
| C1P50_RS24535 () | 55913..56788 | + | 876 | WP_001224621.1 | ChaN family lipoprotein | - |
| C1P50_RS24540 () | 56796..57572 | + | 777 | WP_000981089.1 | energy transducer TonB | - |
| C1P50_RS24545 () | 57741..60002 | + | 2262 | WP_001100761.1 | TonB-dependent receptor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|