MGE detailed information
MGE type: Conjugative plasmid MGE length: 90045 bp
Accession: NZ_CP026754 Location: 1..90045 Organism: Escherichia coli strain AR_0077 Replicon: plasmid tig00000042_pilon
Accession: NZ_CP026754 Location: 1..90045 Organism: Escherichia coli strain AR_0077 Replicon: plasmid tig00000042_pilon
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM456_RS00010 () | 157..387 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| AM456_RS26255 () | 1066..1387 | + | 322 | Protein_2 | pilus assembly protein | - |
| AM456_RS00030 () | 1366..1557 | - | 192 | WP_065553465.1 | hypothetical protein | - |
| AM456_RS00035 () | 1554..2018 | - | 465 | WP_158660468.1 | DUF1380 family protein | - |
| AM456_RS00040 () | 2018..2320 | - | 303 | WP_072130806.1 | antirestriction protein | - |
| AM456_RS26260 () | 2861..3637 | - | 777 | WP_199773140.1 | hypothetical protein | - |
| AM456_RS00055 () | 3682..4116 | - | 435 | WP_104888847.1 | DUF1380 family protein | - |
| AM456_RS00060 () | 4130..4351 | - | 222 | WP_001104885.1 | hypothetical protein | - |
| AM456_RS00065 () | 4352..5035 | - | 684 | WP_104888848.1 | DNA methylase | - |
| AM456_RS00070 () | 5112..5423 | - | 312 | WP_199773141.1 | hypothetical protein | - |
| AM456_RS00080 () | 5420..6322 | - | 903 | WP_158660467.1 | DUF1281 domain-containing protein | - |
| AM456_RS00090 () | 6740..6862 | + | 123 | Protein_12 | DinI family protein | - |
| AM456_RS00095 () | 7003..7395 | - | 393 | WP_104888850.1 | plasmid partitioning/stability family protein | - |
| AM456_RS00100 () | 7399..8370 | - | 972 | Protein_14 | plasmid segregation protein ParM | - |
| AM456_RS26265 () | 8598..8972 | - | 375 | WP_000752649.1 | hypothetical protein | - |
| AM456_RS00110 () | 8972..9604 | - | 633 | WP_000312330.1 | ParA family protein | - |
| AM456_RS00120 () | 10452..11207 | - | 756 | WP_000807692.1 | replication initiation protein RepE | - |
| AM456_RS00125 () | 11765..12571 | - | 807 | WP_104888851.1 | site-specific integrase | - |
| AM456_RS00130 () | 12572..12877 | - | 306 | WP_042191934.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AM456_RS00135 () | 12879..13097 | - | 219 | WP_085460092.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AM456_RS00140 () | 13694..13963 | + | 270 | WP_097411212.1 | hypothetical protein | - |
| AM456_RS00145 () | 13951..14547 | + | 597 | WP_104888852.1 | hypothetical protein | - |
| AM456_RS00155 () | 14841..15632 | + | 792 | WP_172943697.1 | polysaccharide deacetylase family protein | - |
| AM456_RS00160 () | 15635..16723 | + | 1089 | WP_097411209.1 | putative hexosyltransferase CapU | - |
| AM456_RS00165 () | 16728..17678 | + | 951 | WP_097411208.1 | virulence factor VirK | - |
| AM456_RS00170 () | 17743..18687 | + | 945 | WP_097411207.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| AM456_RS00175 () | 19008..19817 | - | 810 | Protein_27 | IS256 family transposase IS1414 | Transposase |
| AM456_RS00180 () | 19980..20066 | - | 87 | Protein_28 | fimbrial protein | - |
| AM456_RS00185 () | 20232..21026 | - | 795 | WP_104888853.1 | hypothetical protein | - |
| AM456_RS00190 () | 22141..22927 | + | 787 | Protein_30 | K88 fimbrial protein AB | VF |
| AM456_RS00200 () | 23288..23464 | - | 177 | WP_199773142.1 | hypothetical protein | - |
| AM456_RS26035 () | 23953..24483 | - | 531 | WP_157944850.1 | hypothetical protein | VF |
| AM456_RS00205 () | 24480..25109 | - | 630 | WP_104888855.1 | hypothetical protein | VF |
| AM456_RS00210 () | 25430..25726 | + | 297 | WP_104888856.1 | hypothetical protein | - |
| AM456_RS26040 () | 25920..26013 | + | 94 | Protein_35 | transposase | - |
| AM456_RS00220 () | 26075..26211 | + | 137 | Protein_36 | transposase | - |
| AM456_RS00225 () | 26206..27384 | - | 1179 | Protein_37 | IS256 family transposase ISSoEn2 | Transposase |
| AM456_RS00235 () | 27510..28274 | - | 765 | WP_104888858.1 | hypothetical protein | VF |
| AM456_RS00240 () | 28307..29110 | - | 804 | WP_104888859.1 | hypothetical protein | VF |
| AM456_RS00250 () | 29320..30120 | - | 801 | WP_104888860.1 | hypothetical protein | - |
| AM456_RS00255 () | 30359..30850 | - | 492 | WP_104888861.1 | hypothetical protein | VF |
| AM456_RS00260 () | 30881..31672 | - | 792 | WP_104888862.1 | Chaperone protein FaeE | VF |
| AM456_RS00265 () | 31665..34052 | - | 2388 | WP_104888863.1 | Outer membrane usher protein YraJ | VF |
| AM456_RS00270 () | 34109..34633 | - | 525 | WP_104888864.1 | hypothetical protein | VF |
| AM456_RS00275 () | 35115..35552 | + | 438 | Protein_45 | IS91 family transposase ISEc37 | Transposase |
| AM456_RS00280 () | 35704..36876 | + | 1173 | WP_104888865.1 | IS21 family transposase IS21 | Transposase |
| AM456_RS00285 () | 36876..37673 | + | 798 | WP_158660469.1 | IS21 family transposase IS21 | Transposase |
| AM456_RS26045 () | 37863..38024 | - | 162 | WP_158660463.1 | hypothetical protein | - |
| AM456_RS00295 () | 38157..39179 | + | 1023 | Protein_49 | IS21 family transposase IS100kyp | Transposase |
| AM456_RS00300 () | 39176..39958 | + | 783 | WP_104888867.1 | IS21 family transposase IS100kyp | Transposase |
| AM456_RS00315 () | 40898..41755 | - | 858 | WP_158660464.1 | incFII family plasmid replication initiator RepA | - |
| AM456_RS00320 () | 41748..41822 | - | 75 | WP_001367777.1 | RepA leader peptide Tap | - |
| AM456_RS00330 () | 42054..42311 | - | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| AM456_RS00335 () | 42621..43103 | - | 483 | WP_000405244.1 | GNAT family N-acetyltransferase | Toxin Detail |
| AM456_RS00340 () | 43094..43396 | - | 303 | WP_001346256.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| AM456_RS00345 () | 43717..43923 | - | 207 | WP_104888871.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 43910..43971 | + | 62 | NuclAT_1 | - | - |
| - () | 43910..43971 | + | 62 | NuclAT_1 | - | - |
| - () | 43910..43971 | + | 62 | NuclAT_1 | - | - |
| - () | 43910..43971 | + | 62 | NuclAT_1 | - | - |
| AM456_RS00355 () | 44146..44526 | - | 381 | Protein_57 | DUF2726 domain-containing protein | - |
| AM456_RS00360 () | 44720..44932 | - | 213 | WP_104888872.1 | hypothetical protein | - |
| AM456_RS00365 () | 45068..45628 | - | 561 | WP_104888873.1 | fertility inhibition protein FinO | - |
| AM456_RS00370 () | 45683..46429 | - | 747 | WP_104888874.1 | conjugal transfer pilus acetylase TraX | - |
| AM456_RS00375 () | 46449..51707 | - | 5259 | WP_104888875.1 | Multifunctional conjugation protein TraI | Relaxase |
| AM456_RS00380 () | 51789..52016 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| AM456_RS00385 () | 52016..52414 | + | 399 | WP_000911317.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| AM456_RS00390 () | 52423..54603 | - | 2181 | WP_104888876.1 | type IV conjugative transfer system coupling protein TraD | - |
| AM456_RS00395 () | 54856..55587 | - | 732 | WP_089638634.1 | complement resistance protein TraT | - |
| AM456_RS00400 () | 55601..56110 | - | 510 | WP_104888877.1 | conjugal transfer entry exclusion protein TraS | - |
| AM456_RS00405 () | 56107..58932 | - | 2826 | WP_089638633.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AM456_RS00410 () | 58929..60302 | - | 1374 | WP_104888878.1 | conjugal transfer protein TraH | - |
| AM456_RS00415 () | 60289..60714 | - | 426 | WP_104888879.1 | F-type conjugal transfer protein TrbF | - |
| AM456_RS00420 () | 60635..61009 | - | 375 | WP_158660465.1 | P-type conjugative transfer protein TrbJ | - |
| AM456_RS00425 () | 60939..61484 | - | 546 | WP_000059833.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AM456_RS00430 () | 61471..61755 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AM456_RS00435 () | 61836..62111 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| AM456_RS00440 () | 62113..62460 | - | 348 | WP_104888881.1 | conjugal transfer protein TrbA | - |
| AM456_RS00445 () | 62476..63219 | - | 744 | WP_158660466.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AM456_RS00450 () | 63212..63469 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| AM456_RS00455 () | 63496..65304 | - | 1809 | WP_000821840.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AM456_RS00460 () | 65301..65939 | - | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AM456_RS00465 () | 65948..66940 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| AM456_RS00470 () | 66937..67569 | - | 633 | WP_069913553.1 | type-F conjugative transfer system protein TraW | - |
| AM456_RS00475 () | 67566..67952 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| AM456_RS00480 () | 67949..70576 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| AM456_RS00485 () | 70736..70957 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| AM456_RS00490 () | 71092..71607 | - | 516 | WP_104888883.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AM456_RS00495 () | 71604..71855 | - | 252 | WP_001038330.1 | conjugal transfer protein TrbG | - |
| AM456_RS00500 () | 71867..72097 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| AM456_RS00505 () | 72051..72641 | - | 591 | WP_104888884.1 | conjugal transfer protein TraP | - |
| AM456_RS00510 () | 72631..74058 | - | 1428 | WP_104888885.1 | conjugal transfer protein TraB | - |
| AM456_RS00515 () | 74058..74762 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| AM456_RS00520 () | 74773..75339 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| AM456_RS00525 () | 75361..75672 | - | 312 | WP_000012126.1 | type IV conjugative transfer system protein TraL | - |
| AM456_RS00530 () | 75687..76052 | - | 366 | WP_000994782.1 | type IV conjugative transfer system pilin TraA | - |
| AM456_RS00535 () | 76085..76480 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| AM456_RS00540 () | 76579..77268 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| AM456_RS00545 () | 77455..77838 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| AM456_RS00550 () | 78171..78761 | + | 591 | WP_199773144.1 | hypothetical protein | VF |
| AM456_RS00555 () | 79057..79877 | - | 821 | Protein_97 | DUF932 domain-containing protein | - |
| AM456_RS26270 () | 80056..80655 | + | 600 | Protein_98 | hypothetical protein | - |
| AM456_RS00570 () | 80893..81051 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 82570..82760 | - | 191 | NuclAT_0 | - | - |
| - () | 82570..82760 | - | 191 | NuclAT_0 | - | - |
| - () | 82570..82760 | - | 191 | NuclAT_0 | - | - |
| - () | 82570..82760 | - | 191 | NuclAT_0 | - | - |
| AM456_RS00585 () | 82772..83491 | - | 720 | WP_104888887.1 | plasmid SOS inhibition protein A | - |
| AM456_RS00590 () | 83488..83922 | - | 435 | WP_049143150.1 | conjugation system SOS inhibitor PsiB | - |
| AM456_RS00595 () | 83977..85935 | - | 1959 | WP_094248803.1 | ParB/RepB/Spo0J family partition protein | - |
| AM456_RS00600 () | 86001..86234 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| AM456_RS00605 () | 86297..86836 | - | 540 | WP_104888888.1 | single-stranded DNA-binding protein | - |
| AM456_RS26275 () | 86862..87068 | - | 207 | WP_000547956.1 | hypothetical protein | - |
| AM456_RS26280 () | 87134..87405 | + | 272 | Protein_107 | hypothetical protein | - |
| AM456_RS00620 () | 87713..88030 | - | 318 | WP_001242949.1 | hypothetical protein | - |
| AM456_RS00625 () | 88179..88742 | - | 564 | WP_097432105.1 | class I SAM-dependent methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|