MGE detailed information
MGE type: Prophage MGE length: 20362 bp
Accession: NZ_CP026612 Location: 3159040..3179401 Organism: Escherichia coli strain DTU-1 Replicon: chromosome
Accession: NZ_CP026612 Location: 3159040..3179401 Organism: Escherichia coli strain DTU-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J63_RS16155 () | 3155555..3156301 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C4J63_RS16160 () | 3156390..3157076 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C4J63_RS16165 () | 3157253..3157456 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C4J63_RS16170 () | 3157491..3158951 | - | 1461 | WP_104460186.1 | mannitol dehydrogenase family protein | - |
| C4J63_RS16175 () | 3159040..3160407 | - | 1368 | Protein_2932 | MHS family MFS transporter | - |
| C4J63_RS23045 () | 3160928..3161041 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| C4J63_RS16180 () | 3161110..3161343 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C4J63_RS16185 () | 3161660..3162250 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C4J63_RS16190 () | 3162348..3162923 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C4J63_RS16195 () | 3162923..3163885 | - | 963 | WP_001027733.1 | phage tail protein | - |
| C4J63_RS16200 () | 3163836..3164405 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| C4J63_RS16210 () | 3164794..3165027 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C4J63_RS16215 () | 3165021..3165137 | - | 117 | Protein_2940 | cold-shock protein | - |
| C4J63_RS16220 () | 3165148..3165360 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C4J63_RS16225 () | 3165723..3166220 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C4J63_RS16230 () | 3166217..3166750 | - | 534 | WP_001092971.1 | lysozyme | - |
| C4J63_RS16235 () | 3166747..3167058 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| C4J63_RS16240 () | 3167063..3167278 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C4J63_RS23315 () | 3167498..3167668 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C4J63_RS16245 () | 3168032..3168247 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C4J63_RS16250 () | 3168548..3168760 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C4J63_RS23050 () | 3168815..3168904 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| C4J63_RS16255 () | 3169182..3169934 | - | 753 | WP_001047135.1 | antitermination protein | - |
| C4J63_RS16260 () | 3169948..3170997 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| C4J63_RS16265 () | 3170999..3171277 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| C4J63_RS16270 () | 3171344..3171595 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| C4J63_RS16275 () | 3171812..3171967 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C4J63_RS16280 () | 3172039..3172326 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C4J63_RS16285 () | 3172326..3172565 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C4J63_RS16290 () | 3172590..3172895 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| C4J63_RS16295 () | 3173098..3173430 | + | 333 | WP_001301033.1 | protein FlxA | - |
| C4J63_RS23055 () | 3173867..3174016 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| C4J63_RS16305 () | 3174051..3174329 | - | 279 | Protein_2960 | hypothetical protein | - |
| C4J63_RS16310 () | 3174313..3174543 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C4J63_RS16315 () | 3174627..3175034 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C4J63_RS16320 () | 3175201..3175356 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C4J63_RS16330 () | 3175516..3175734 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| C4J63_RS16340 () | 3176302..3176490 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C4J63_RS16345 () | 3176487..3176678 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C4J63_RS16350 () | 3176771..3177538 | + | 768 | Protein_2967 | exonuclease | - |
| C4J63_RS16355 () | 3177535..3178230 | + | 696 | Protein_2968 | IS3 family transposase IS2 | Transposase |
| C4J63_RS16360 () | 3178244..3179401 | + | 1158 | Protein_2969 | Putative defective protein IntQ ; Integrase | Integrase |
| C4J63_RS16370 () | 3179589..3180608 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| C4J63_RS16375 () | 3180620..3181834 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C4J63_RS16385 () | 3182040..3182366 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| C4J63_RS16390 () | 3182501..3182842 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| C4J63_RS16395 () | 3182877..3183437 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C4J63_RS16400 () | 3183440..3184150 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.003 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |