MGE detailed information
MGE type: Conjugative plasmid MGE length: 70688 bp
Accession: NZ_CP026576 Location: 1..70688 Organism: Escherichia coli strain WCHEC005237 Replicon: plasmid pCTX-M-55_005237
Accession: NZ_CP026576 Location: 1..70688 Organism: Escherichia coli strain WCHEC005237 Replicon: plasmid pCTX-M-55_005237
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E05_RS00125 () | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| C4E05_RS00135 () | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| C4E05_RS00140 () | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| C4E05_RS00145 () | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| C4E05_RS00150 () | 3383..3798 | + | 416 | Protein_5 | IS1 family transposase IS1R | Transposase |
| C4E05_RS00155 () | 3834..4379 | - | 546 | Protein_6 | Tn3 family transposase TnpA_Tn3 | Transposase |
| C4E05_RS00160 () | 4445..5149 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C4E05_RS00165 () | 5535..5951 | + | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| C4E05_RS00170 () | 5956..6474 | - | 519 | WP_104732846.1 | hypothetical protein | - |
| C4E05_RS00175 () | 6474..7262 | - | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| C4E05_RS00180 () | 7282..7752 | - | 471 | WP_049824851.1 | TetR family transcriptional regulator | - |
| C4E05_RS00190 () | 7762..8466 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C4E05_RS00195 () | 8738..9418 | + | 681 | Protein_13 | IS91 family transposase ISAzo26 | Transposase |
| C4E05_RS00200 () | 9483..10187 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C4E05_RS00205 () | 10237..10980 | + | 744 | Protein_15 | Beta-lactamase TEM | ARG |
| C4E05_RS00210 () | 11239..11715 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| C4E05_RS00215 () | 11762..12637 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| C4E05_RS00220 () | 13059..13763 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| C4E05_RS25655 () | 13829..13894 | + | 66 | Protein_19 | IS1 family transposase | - |
| C4E05_RS00240 () | 15343..15577 | + | 235 | Protein_20 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C4E05_RS00245 () | 15705..15986 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| C4E05_RS00250 () | 16109..16459 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| C4E05_RS00255 () | 16462..17424 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| C4E05_RS00260 () | 17571..17864 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| C4E05_RS00270 () | 17941..18624 | + | 684 | WP_000085883.1 | DNA methylase | - |
| C4E05_RS00275 () | 18625..18846 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| C4E05_RS00280 () | 18860..19294 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| C4E05_RS25660 () | 19345..20121 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| C4E05_RS00295 () | 20662..20964 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| C4E05_RS00300 () | 21011..21433 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| C4E05_RS00305 () | 21430..21621 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| C4E05_RS00315 () | 22659..22889 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| C4E05_RS00320 () | 22941..24302 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| C4E05_RS00325 () | 24349..24912 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| C4E05_RS00345 () | 25761..26288 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| C4E05_RS00350 () | 26346..26579 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| C4E05_RS00355 () | 26640..28663 | + | 2024 | Protein_37 | ParB/RepB/Spo0J family partition protein | - |
| C4E05_RS00360 () | 28732..29166 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| C4E05_RS00365 () | 29163..29882 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 29894..30118 | + | 225 | NuclAT_0 | - | - |
| - () | 29894..30118 | + | 225 | NuclAT_0 | - | - |
| - () | 29894..30118 | + | 225 | NuclAT_0 | - | - |
| - () | 29894..30118 | + | 225 | NuclAT_0 | - | - |
| C4E05_RS25665 () | 29903..30082 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| C4E05_RS00370 () | 30162..30320 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C4E05_RS25670 () | 30558..30935 | - | 378 | Protein_42 | hypothetical protein | - |
| C4E05_RS00390 () | 31235..31531 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| C4E05_RS00395 () | 31642..32463 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| C4E05_RS00400 () | 32760..33407 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| C4E05_RS00405 () | 33684..34067 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| C4E05_RS00410 () | 34258..34944 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| C4E05_RS00415 () | 35038..35265 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| C4E05_RS00420 () | 35299..35664 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| C4E05_RS00425 () | 35679..35990 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| C4E05_RS00430 () | 36012..36578 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| C4E05_RS00435 () | 36589..37293 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| C4E05_RS00440 () | 37293..38720 | + | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| C4E05_RS00445 () | 38710..39300 | + | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| C4E05_RS00450 () | 39254..39484 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| C4E05_RS00455 () | 39496..39747 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| C4E05_RS00460 () | 39744..40259 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C4E05_RS00465 () | 40394..40615 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| C4E05_RS00470 () | 40775..43402 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| C4E05_RS00475 () | 43399..43785 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| C4E05_RS00480 () | 43782..44414 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| C4E05_RS00485 () | 44411..45403 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| C4E05_RS00490 () | 45430..45738 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| C4E05_RS00495 () | 45801..46322 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| C4E05_RS00500 () | 46349..46987 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C4E05_RS00505 () | 46984..47355 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| C4E05_RS00510 () | 47381..47803 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| C4E05_RS00515 () | 47800..49650 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C4E05_RS00520 () | 49677..49934 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| C4E05_RS00525 () | 49927..50670 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C4E05_RS00530 () | 50786..51067 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C4E05_RS00535 () | 51054..51599 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C4E05_RS00540 () | 51529..51903 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| C4E05_RS00545 () | 51857..52249 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| C4E05_RS00550 () | 52236..53609 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| C4E05_RS00555 () | 53606..56422 | + | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C4E05_RS00560 () | 56455..56976 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| C4E05_RS00565 () | 57001..57732 | + | 732 | WP_097473730.1 | complement resistance protein TraT | - |
| C4E05_RS00570 () | 57935..58672 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| C4E05_RS00575 () | 58723..61029 | + | 2307 | WP_113918767.1 | Coupling protein TraD | VF |
| C4E05_RS00580 () | 61029..66299 | + | 5271 | WP_104732849.1 | Multifunctional conjugation protein TraI | Relaxase |
| C4E05_RS00585 () | 66319..67065 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| C4E05_RS00590 () | 67120..67680 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| C4E05_RS00595 () | 67812..68012 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| C4E05_RS00600 () | 68398..68997 | + | 600 | WP_032083981.1 | hypothetical protein | - |
| C4E05_RS00605 () | 69161..69391 | + | 231 | WP_001736714.1 | hypothetical protein | - |
| - () | 69592..69651 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 69592..69651 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 69592..69651 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 69592..69651 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| C4E05_RS00615 () | 69696..69845 | + | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C4E05_RS00620 () | 70129..70377 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|