MGE detailed information
MGE type: Conjugative plasmid MGE length: 103161 bp
Accession: NZ_CP026403 Location: 1..103161 Organism: Escherichia coli strain ECONIH4 Replicon: plasmid pECO-816c
Accession: NZ_CP026403 Location: 1..103161 Organism: Escherichia coli strain ECONIH4 Replicon: plasmid pECO-816c
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3F40_RS28490 () | 178..552 | - | 375 | WP_011977761.1 | hypothetical protein | - |
| C3F40_RS28495 () | 664..1617 | - | 954 | WP_001198018.1 | cation diffusion facilitator family transporter | - |
| C3F40_RS28505 () | 3258..3734 | + | 477 | WP_000043177.1 | hypothetical protein | VF |
| C3F40_RS28510 () | 4039..4389 | - | 351 | WP_000928911.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| C3F40_RS28515 () | 4551..6209 | + | 1659 | WP_000706606.1 | FAD-dependent oxidoreductase | - |
| C3F40_RS28520 () | 6455..6919 | + | 465 | WP_001243598.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| C3F40_RS28530 () | 7199..7723 | - | 525 | Protein_7 | IS5 family transposase ISKpn26 | Transposase |
| C3F40_RS28535 () | 7759..9198 | - | 1440 | Protein_8 | IS66 family transposase ISKox1 | Transposase |
| C3F40_RS28540 () | 9263..9967 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C3F40_RS28545 () | 9973..10206 | + | 234 | WP_089617563.1 | helix-turn-helix domain-containing protein | - |
| C3F40_RS28550 () | 10304..10720 | - | 417 | WP_104457618.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C3F40_RS28555 () | 10717..10947 | - | 231 | WP_001261282.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| C3F40_RS31620 () | 10904..11365 | + | 462 | WP_199773263.1 | hypothetical protein | - |
| C3F40_RS28565 () | 11509..11859 | + | 351 | WP_000493378.1 | hypothetical protein | - |
| C3F40_RS28570 () | 12019..12816 | - | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| C3F40_RS28575 () | 12816..13988 | - | 1173 | WP_042111630.1 | IS21 family transposase IS21 | Transposase |
| C3F40_RS28580 () | 14074..14253 | + | 180 | Protein_17 | hypothetical protein | - |
| C3F40_RS28590 () | 14305..15016 | - | 712 | Protein_18 | IS6 family transposase | - |
| C3F40_RS28600 () | 15085..15525 | + | 441 | Protein_19 | ISNCY family transposase ISKpn21 | Transposase |
| C3F40_RS28605 () | 15768..16631 | - | 864 | WP_000902059.1 | toll/interleukin-1 receptor domain-containing protein | - |
| C3F40_RS28610 () | 16648..17013 | - | 366 | WP_050427582.1 | hypothetical protein | - |
| C3F40_RS28620 () | 17462..18173 | - | 712 | Protein_22 | IS6 family transposase | - |
| C3F40_RS28625 () | 18239..18670 | + | 432 | WP_001707302.1 | hypothetical protein | - |
| C3F40_RS28630 () | 18667..19458 | + | 792 | WP_000016494.1 | site-specific integrase | - |
| C3F40_RS28635 () | 19596..19871 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| C3F40_RS28640 () | 19865..20509 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| C3F40_RS28645 () | 20738..21709 | + | 972 | WP_001103690.1 | hypothetical protein | - |
| C3F40_RS28650 () | 21714..22106 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| C3F40_RS28655 () | 22111..23382 | - | 1272 | WP_000457518.1 | Y-family DNA polymerase | - |
| C3F40_RS28660 () | 23382..23819 | - | 438 | WP_089588324.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C3F40_RS28665 () | 23816..24064 | - | 249 | WP_000618105.1 | DinI-like family protein | - |
| C3F40_RS28675 () | 24482..25384 | + | 903 | Protein_32 | DUF1281 domain-containing protein | - |
| C3F40_RS28680 () | 25381..25691 | + | 311 | Protein_33 | hypothetical protein | - |
| C3F40_RS28685 () | 25768..26451 | + | 684 | WP_089588325.1 | DNA methylase | - |
| C3F40_RS28690 () | 26452..26673 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| C3F40_RS28695 () | 26687..27121 | + | 435 | WP_000274502.1 | DUF1380 family protein | - |
| C3F40_RS31375 () | 27166..27935 | + | 770 | Protein_37 | hypothetical protein | - |
| C3F40_RS28715 () | 28475..28777 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| C3F40_RS28720 () | 28824..29246 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| C3F40_RS28725 () | 29243..29434 | + | 192 | WP_001027519.1 | hypothetical protein | - |
| C3F40_RS31380 () | 29707..29955 | - | 249 | WP_071556315.1 | hypothetical protein | - |
| C3F40_RS28735 () | 30469..30699 | + | 231 | WP_072131853.1 | hypothetical protein | - |
| C3F40_RS28740 () | 30751..32112 | + | 1362 | WP_096912185.1 | DUF3560 domain-containing protein | - |
| C3F40_RS28745 () | 32159..32722 | + | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| C3F40_RS28750 () | 32748..32945 | + | 198 | WP_104457621.1 | hypothetical protein | - |
| C3F40_RS31625 () | 33356..33562 | + | 207 | WP_000275853.1 | hypothetical protein | - |
| C3F40_RS28775 () | 33588..34127 | + | 540 | WP_000290838.1 | single-stranded DNA-binding protein | - |
| C3F40_RS28780 () | 34190..34423 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| C3F40_RS28785 () | 34489..36447 | + | 1959 | WP_097734687.1 | ParB/RepB/Spo0J family partition protein | - |
| C3F40_RS28790 () | 36502..36936 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| C3F40_RS28795 () | 36933..37652 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| C3F40_RS31385 () | 37664..37852 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 37664..37888 | + | 225 | NuclAT_0 | - | - |
| - () | 37664..37888 | + | 225 | NuclAT_0 | - | - |
| - () | 37664..37888 | + | 225 | NuclAT_0 | - | - |
| - () | 37664..37888 | + | 225 | NuclAT_0 | - | - |
| C3F40_RS28800 () | 37932..38090 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C3F40_RS28820 () | 39012..39299 | + | 288 | WP_000107548.1 | hypothetical protein | - |
| C3F40_RS28825 () | 39419..40240 | + | 822 | WP_139942663.1 | DUF945 domain-containing protein | - |
| C3F40_RS28830 () | 40537..41139 | - | 603 | WP_077815103.1 | hypothetical protein | VF |
| C3F40_RS28835 () | 41460..41843 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| C3F40_RS28840 () | 42030..42719 | + | 690 | WP_097734686.1 | conjugal transfer transcriptional regulator TraJ | - |
| C3F40_RS28845 () | 42818..43213 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| C3F40_RS28850 () | 43246..43605 | + | 360 | WP_052908075.1 | type IV conjugative transfer system pilin TraA | - |
| C3F40_RS28855 () | 43620..43931 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| C3F40_RS28860 () | 43953..44519 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| C3F40_RS28865 () | 44530..45234 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| C3F40_RS28870 () | 45234..46661 | + | 1428 | WP_074503457.1 | conjugal transfer protein TraB | - |
| C3F40_RS28875 () | 46651..47238 | + | 588 | WP_000002772.1 | conjugal transfer protein TraP | - |
| C3F40_RS28880 () | 47177..47533 | + | 357 | WP_104457622.1 | conjugal transfer protein TrbD | - |
| C3F40_RS28885 () | 47542..48057 | + | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C3F40_RS28890 () | 48192..48413 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| C3F40_RS28895 () | 48572..51199 | + | 2628 | WP_088541129.1 | type IV secretion system protein TraC | - |
| C3F40_RS28900 () | 51196..51582 | + | 387 | WP_032215886.1 | type-F conjugative transfer system protein TrbI | - |
| C3F40_RS28905 () | 51579..52211 | + | 633 | WP_052925724.1 | type-F conjugative transfer system protein TraW | - |
| C3F40_RS28910 () | 52208..53200 | + | 993 | WP_104457623.1 | conjugal transfer pilus assembly protein TraU | - |
| C3F40_RS28915 () | 53209..53847 | + | 639 | WP_097498052.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C3F40_RS28920 () | 53844..54224 | + | 381 | WP_039052469.1 | hypothetical protein | - |
| C3F40_RS28925 () | 54535..56322 | + | 1788 | WP_061361942.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C3F40_RS28930 () | 56349..56606 | + | 258 | WP_075842300.1 | conjugal transfer protein TrbE | - |
| C3F40_RS28935 () | 56599..57342 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C3F40_RS28940 () | 57356..57697 | + | 342 | WP_097308477.1 | conjugal transfer protein TrbA | - |
| C3F40_RS28945 () | 57678..58013 | - | 336 | WP_097308476.1 | toxin ArtA | - |
| C3F40_RS28950 () | 58094..58378 | + | 285 | WP_000624105.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C3F40_RS28955 () | 58365..58919 | + | 555 | WP_001553830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C3F40_RS28960 () | 58849..59223 | + | 375 | WP_158649919.1 | P-type conjugative transfer protein TrbJ | - |
| C3F40_RS28965 () | 59177..59569 | + | 393 | WP_096200206.1 | F-type conjugal transfer protein TrbF | - |
| C3F40_RS28970 () | 59556..60929 | + | 1374 | WP_113444820.1 | conjugal transfer protein TraH | - |
| C3F40_RS28975 () | 60926..63751 | + | 2826 | WP_104457625.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C3F40_RS28980 () | 63748..64257 | + | 510 | WP_000628100.1 | conjugal transfer entry exclusion protein TraS | - |
| C3F40_RS28985 () | 64271..65002 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| C3F40_RS28990 () | 65254..67443 | + | 2190 | WP_104457626.1 | type IV conjugative transfer system coupling protein TraD | - |
| C3F40_RS28995 () | 67443..72713 | + | 5271 | WP_104457627.1 | Multifunctional conjugation protein TraI | Relaxase |
| C3F40_RS29000 () | 72733..73476 | + | 744 | WP_097498043.1 | conjugal transfer pilus acetylase TraX | - |
| C3F40_RS29005 () | 73531..74091 | + | 561 | WP_047402278.1 | fertility inhibition protein FinO | - |
| C3F40_RS29010 () | 74222..74434 | + | 213 | WP_097308475.1 | hypothetical protein | - |
| C3F40_RS29020 () | 74679..75140 | + | 462 | WP_097308474.1 | thermonuclease family protein | - |
| C3F40_RS29025 () | 75186..75395 | + | 210 | WP_097308473.1 | hemolysin expression modulator Hha | - |
| C3F40_RS29030 () | 75434..76024 | + | 591 | WP_000766816.1 | DUF2726 domain-containing protein | - |
| C3F40_RS29035 () | 76264..76521 | + | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| C3F40_RS29045 () | 76755..76829 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C3F40_RS29050 () | 76822..77679 | + | 858 | WP_123002231.1 | incFII family plasmid replication initiator RepA | - |
| C3F40_RS29065 () | 78721..79727 | - | 1007 | Protein_99 | IS3 family transposase ISEcl1 | Transposase |
| C3F40_RS29070 () | 80227..81717 | + | 1491 | WP_011787801.1 | SulP family inorganic anion transporter | - |
| C3F40_RS29075 () | 81752..82609 | + | 858 | WP_055329964.1 | universal stress protein | - |
| C3F40_RS29080 () | 82700..83032 | + | 333 | WP_011787803.1 | TraR/DksA C4-type zinc finger protein | - |
| C3F40_RS29085 () | 83150..83485 | - | 336 | Protein_103 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C3F40_RS29095 () | 83529..84233 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| C3F40_RS29100 () | 84297..85037 | + | 741 | Protein_105 | KfrA protein | - |
| C3F40_RS29110 () | 85833..87323 | + | 1491 | WP_011787801.1 | SulP family inorganic anion transporter | - |
| C3F40_RS29115 () | 87358..88215 | + | 858 | WP_055329964.1 | universal stress protein | - |
| C3F40_RS29120 () | 88306..88638 | + | 333 | WP_011787803.1 | TraR/DksA C4-type zinc finger protein | - |
| C3F40_RS29125 () | 88756..89151 | - | 396 | Protein_109 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C3F40_RS29130 () | 89132..92140 | - | 3009 | WP_038421110.1 | Tn3 family transposase ISEc63 | Transposase |
| C3F40_RS29135 () | 92304..92870 | + | 567 | WP_004098835.1 | Tn3 family transposase ISEc63 | Transposase |
| C3F40_RS29140 () | 92898..93605 | + | 708 | WP_001258875.1 | hypothetical protein | - |
| C3F40_RS29145 () | 93646..94260 | - | 615 | WP_000160641.1 | TIR domain-containing protein | - |
| C3F40_RS29150 () | 94429..95196 | + | 768 | WP_001159650.1 | hypothetical protein | VF |
| C3F40_RS29155 () | 95319..95600 | - | 282 | Protein_115 | Tn3 family transposase TnBth3 | Transposase |
| C3F40_RS29160 () | 95770..96030 | + | 261 | WP_011787805.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| C3F40_RS29165 () | 96030..96341 | + | 312 | WP_011918375.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C3F40_RS29170 () | 96365..99445 | + | 3081 | WP_011787830.1 | Tn3 family transposase ISPsy42 | Transposase |
| C3F40_RS29180 () | 99714..100682 | + | 969 | WP_028016388.1 | IS110 family transposase ISSm3 | Transposase |
| C3F40_RS29185 () | 100701..100868 | - | 168 | Protein_120 | IS3 family transposase ISEcl1 | Transposase |
| C3F40_RS29190 () | 101041..101352 | + | 312 | WP_011977758.1 | hypothetical protein | - |
| C3F40_RS29195 () | 101495..102184 | - | 690 | WP_016240364.1 | VIT family protein | - |
| C3F40_RS29200 () | 102320..102901 | - | 582 | WP_011977760.1 | cytochrome b/b6 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|