MGE detailed information
MGE type: Genomic_island MGE length: 29595 bp
Accession: NZ_CP026343 Location: 2758643..2788237 Organism: Escherichia coli strain 9A Replicon: chromosome
Accession: NZ_CP026343 Location: 2758643..2788237 Organism: Escherichia coli strain 9A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2R20_RS14365 () | 2754007..2754297 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| C2R20_RS14370 () | 2754287..2754724 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| C2R20_RS14375 () | 2754895..2755377 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| C2R20_RS14385 () | 2756158..2757399 | + | 1242 | WP_000101723.1 | integrase | - |
| C2R20_RS14390 () | 2757643..2758599 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| C2R20_RS14395 () | 2758643..2758855 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| C2R20_RS14400 () | 2758984..2760393 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| C2R20_RS14405 () | 2760546..2761172 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| C2R20_RS14410 () | 2761350..2763539 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| C2R20_RS14415 () | 2763536..2765152 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| C2R20_RS14420 () | 2765512..2765775 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| C2R20_RS14425 () | 2765917..2766990 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| C2R20_RS14430 () | 2766983..2767354 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| C2R20_RS14435 () | 2767709..2768572 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| C2R20_RS14440 () | 2768664..2769485 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| C2R20_RS14445 () | 2769702..2770403 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| C2R20_RS14450 () | 2770444..2770680 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| C2R20_RS14455 () | 2770680..2771123 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| C2R20_RS14460 () | 2771147..2771614 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| C2R20_RS14465 () | 2771839..2772153 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| C2R20_RS14470 () | 2772166..2773175 | - | 1010 | Protein_2648 | arsenic transporter | - |
| C2R20_RS14475 () | 2773317..2775020 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| C2R20_RS14480 () | 2775592..2775815 | + | 224 | Protein_2650 | DUF905 domain-containing protein | - |
| C2R20_RS14485 () | 2775918..2776376 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| C2R20_RS14490 () | 2776385..2776867 | + | 483 | WP_001407480.1 | RadC family protein | - |
| C2R20_RS14495 () | 2776876..2777076 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| C2R20_RS14500 () | 2777114..2777431 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C2R20_RS14505 () | 2777452..2777781 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| C2R20_RS14510 () | 2778145..2782725 | - | 4581 | WP_010723187.1 | Putative sialic acid transporter | VF |
| C2R20_RS24210 () | 2782790..2782909 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| C2R20_RS14520 () | 2783064..2783282 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| C2R20_RS24215 () | 2783637..2785010 | - | 1374 | Protein_2659 | DUF5507 domain-containing protein | - |
| C2R20_RS24360 () | 2786396..2788648 | + | 2253 | Protein_2660 | alpha-amylase family protein | - |
| C2R20_RS14555 () | 2788984..2789961 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| C2R20_RS14560 () | 2789981..2791249 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| C2R20_RS14565 () | 2791272..2792720 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.003 |