MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 89289 bp
Accession: NZ_CP026235 Location: 1284829..1374117 Organism: Citrobacter freundii complex sp. CFNIH3 Replicon: chromosome
Accession: NZ_CP026235 Location: 1284829..1374117 Organism: Citrobacter freundii complex sp. CFNIH3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U38_RS06340 () | 1281523..1281839 | + | 317 | Protein_1190 | transposase | - |
| C2U38_RS06350 () | 1282258..1283382 | - | 1125 | WP_021314392.1 | ABC transporter permease | - |
| C2U38_RS06355 () | 1283382..1286111 | - | 2730 | WP_021314393.1 | ribosome-associated ATPase/putative transporter RbbA | - |
| C2U38_RS06360 () | 1286108..1287175 | - | 1068 | WP_028016386.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| C2U38_RS06370 () | 1287561..1288363 | - | 803 | Protein_1194 | IS5 family transposase | - |
| C2U38_RS06375 () | 1288573..1288890 | + | 318 | WP_014837258.1 | hypothetical protein | - |
| C2U38_RS06380 () | 1289138..1289323 | - | 186 | Protein_1196 | fructuronate reductase | - |
| C2U38_RS06385 () | 1289322..1290068 | + | 747 | Protein_1197 | IS21 family transposase IS21 | Transposase |
| C2U38_RS28455 () | 1290156..1290812 | - | 657 | WP_125295935.1 | hypothetical protein | - |
| C2U38_RS06395 () | 1290942..1291158 | + | 217 | Protein_1199 | helix-turn-helix domain-containing protein | - |
| C2U38_RS06400 () | 1291192..1291665 | - | 474 | Protein_1200 | IS66 family transposase ISCro1 | Transposase |
| C2U38_RS06405 () | 1291667..1291729 | - | 63 | WP_071846184.1 | hypothetical protein | - |
| C2U38_RS06410 () | 1292413..1292970 | + | 558 | WP_103283573.1 | hypothetical protein | VF |
| C2U38_RS06415 () | 1293052..1293780 | + | 729 | WP_042933963.1 | hypothetical protein | VF |
| C2U38_RS06420 () | 1293856..1296417 | + | 2562 | WP_014837265.1 | hypothetical protein | VF |
| C2U38_RS06425 () | 1296414..1297451 | + | 1038 | WP_042933965.1 | hypothetical protein | VF |
| C2U38_RS06435 () | 1297880..1298467 | - | 588 | WP_047683733.1 | hypothetical protein | - |
| C2U38_RS06440 () | 1298690..1299403 | - | 714 | WP_042933967.1 | hypothetical protein | VF |
| C2U38_RS06445 () | 1299419..1299821 | - | 403 | Protein_1208 | fimbrial protein | - |
| C2U38_RS06450 () | 1300005..1300274 | - | 270 | Protein_1209 | IS66 family transposase ISEc49 | Transposase |
| C2U38_RS06455 () | 1300302..1300607 | + | 306 | WP_042933968.1 | HigA family addiction module antidote protein | - |
| C2U38_RS06460 () | 1300714..1301043 | + | 330 | Protein_1211 | IS4 family transposase ISIlo1 | Transposase |
| C2U38_RS06465 () | 1301159..1301365 | - | 207 | WP_047725194.1 | AlpA family transcriptional regulator | - |
| C2U38_RS06470 () | 1301668..1301910 | - | 243 | WP_044350487.1 | AlpA family phage regulatory protein | - |
| C2U38_RS06475 () | 1302023..1302889 | + | 867 | WP_044350485.1 | hypothetical protein | - |
| C2U38_RS06480 () | 1303232..1304689 | - | 1458 | WP_103283574.1 | DUF3987 domain-containing protein | - |
| C2U38_RS06485 () | 1304925..1305557 | - | 633 | WP_072032909.1 | inovirus Gp2 family protein | - |
| C2U38_RS06490 () | 1306094..1306918 | + | 825 | WP_065805884.1 | DUF945 domain-containing protein | - |
| C2U38_RS06495 () | 1306915..1307172 | + | 258 | WP_044349282.1 | DUF905 domain-containing protein | - |
| C2U38_RS06500 () | 1307252..1307695 | + | 444 | WP_065805885.1 | antirestriction protein | - |
| C2U38_RS06505 () | 1307707..1308186 | + | 480 | WP_065805886.1 | DNA repair protein RadC | - |
| C2U38_RS06510 () | 1308200..1308421 | + | 222 | WP_065805887.1 | DUF987 domain-containing protein | - |
| C2U38_RS06515 () | 1308479..1308805 | + | 327 | WP_175364756.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C2U38_RS06520 () | 1308862..1309251 | + | 390 | WP_065805889.1 | TA system toxin CbtA family protein | Toxin Detail |
| C2U38_RS06525 () | 1309338..1310183 | + | 846 | WP_065805890.1 | DUF4942 domain-containing protein | - |
| C2U38_RS06535 () | 1311086..1312138 | - | 1053 | WP_103283575.1 | macro domain-containing protein | - |
| C2U38_RS06540 () | 1312152..1312799 | - | 648 | WP_103284449.1 | DUF4433 domain-containing protein | - |
| C2U38_RS06545 () | 1312900..1313733 | - | 834 | WP_103283576.1 | DUF4942 domain-containing protein | - |
| C2U38_RS06550 () | 1313847..1314167 | - | 321 | WP_103283577.1 | TA system toxin CbtA family protein | Toxin Detail |
| C2U38_RS06555 () | 1314235..1314570 | - | 336 | WP_103283578.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C2U38_RS06560 () | 1314587..1314808 | - | 222 | WP_103283579.1 | DUF987 domain-containing protein | - |
| C2U38_RS06565 () | 1314818..1315297 | - | 480 | WP_103283580.1 | DNA repair protein RadC | - |
| C2U38_RS06570 () | 1315309..1315773 | - | 465 | WP_103283581.1 | antirestriction protein | - |
| C2U38_RS06575 () | 1315963..1316712 | - | 750 | Protein_1233 | autotransporter domain-containing protein | - |
| C2U38_RS06580 () | 1316693..1316782 | - | 90 | Protein_1234 | transcriptional regulator | - |
| C2U38_RS06590 () | 1317017..1317838 | - | 822 | WP_103283583.1 | DUF945 domain-containing protein | - |
| C2U38_RS06595 () | 1317930..1318793 | - | 864 | WP_103283584.1 | GTPase family protein | - |
| C2U38_RS06600 () | 1318983..1320860 | - | 1878 | WP_103283585.1 | ATP-dependent helicase | - |
| C2U38_RS06605 () | 1320857..1323142 | - | 2286 | WP_103283586.1 | ATP-dependent endonuclease | - |
| C2U38_RS06610 () | 1323433..1324005 | + | 573 | WP_103283587.1 | hypothetical protein | - |
| C2U38_RS06615 () | 1324055..1325662 | + | 1608 | WP_103283588.1 | type I restriction-modification system subunit M | - |
| C2U38_RS06620 () | 1325662..1326894 | + | 1233 | WP_146053240.1 | restriction endonuclease subunit S | - |
| C2U38_RS06625 () | 1326953..1329865 | + | 2913 | WP_103283589.1 | type I restriction endonuclease subunit R | - |
| C2U38_RS06630 () | 1329901..1331766 | + | 1866 | WP_103283590.1 | YaaW family protein | - |
| C2U38_RS06635 () | 1331798..1332553 | + | 756 | WP_181022925.1 | PD-(D/E)XK nuclease family protein | - |
| C2U38_RS06640 () | 1332569..1333216 | + | 648 | WP_103283592.1 | hypothetical protein | - |
| C2U38_RS06645 () | 1333290..1333910 | - | 621 | WP_103283593.1 | inovirus Gp2 family protein | - |
| C2U38_RS06655 () | 1334373..1335137 | - | 765 | Protein_1247 | hypothetical protein | - |
| C2U38_RS06660 () | 1335273..1335494 | - | 222 | WP_072004856.1 | helix-turn-helix domain-containing protein | - |
| C2U38_RS06665 () | 1335491..1335805 | - | 315 | WP_032180900.1 | hypothetical protein | - |
| C2U38_RS06670 () | 1336063..1336800 | - | 738 | WP_103283594.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C2U38_RS06675 () | 1336860..1338263 | + | 1404 | WP_001567368.1 | ISNCY family transposase ISKpn21 | Transposase |
| C2U38_RS06680 () | 1338292..1338924 | - | 633 | WP_001567369.1 | hypothetical protein | - |
| C2U38_RS06685 () | 1339022..1339654 | - | 633 | Protein_1253 | DUF4102 domain-containing protein | - |
| C2U38_RS06690 () | 1339896..1342682 | - | 2787 | WP_103283595.1 | TMAO reductase system sensor histidine kinase/response regulator TorS | - |
| C2U38_RS06700 () | 1342883..1343863 | - | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| C2U38_RS06705 () | 1343932..1344780 | + | 849 | Protein_1256 | efflux RND transporter periplasmic adaptor subunit | - |
| C2U38_RS06710 () | 1344792..1347935 | + | 3144 | WP_016152153.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| C2U38_RS06715 () | 1347987..1348841 | - | 855 | WP_046275134.1 | HTH-type transcriptional activator RhaR | VF |
| C2U38_RS06720 () | 1349077..1349866 | + | 790 | Protein_1259 | FAD-dependent oxidoreductase | - |
| C2U38_RS06725 () | 1349856..1350553 | - | 698 | Protein_1260 | IS1 family transposase | - |
| C2U38_RS28460 () | 1350609..1350701 | - | 93 | Protein_1261 | DNA-binding response regulator | - |
| C2U38_RS06735 () | 1351320..1352495 | - | 1176 | WP_016152164.1 | hypothetical protein | - |
| C2U38_RS06740 () | 1352742..1354136 | + | 1395 | WP_019076228.1 | phenylalanine transporter | - |
| C2U38_RS06745 () | 1354302..1355543 | + | 1242 | WP_016155933.1 | MFS transporter | - |
| C2U38_RS06750 () | 1355559..1356587 | + | 1029 | WP_103283596.1 | sugar phosphate isomerase/epimerase | - |
| C2U38_RS06755 () | 1356584..1357735 | + | 1152 | WP_016155935.1 | Gfo/Idh/MocA family oxidoreductase | - |
| C2U38_RS06760 () | 1357813..1358793 | + | 981 | WP_016152169.1 | LacI family DNA-binding transcriptional regulator | - |
| C2U38_RS06765 () | 1358797..1360041 | - | 1245 | WP_016152170.1 | mechanosensitive ion channel family protein | - |
| C2U38_RS06770 () | 1360106..1360759 | - | 654 | WP_103283597.1 | oxygen-insensitive NAD(P)H nitroreductase | - |
| C2U38_RS06775 () | 1360879..1361247 | - | 369 | WP_016152172.1 | MmcQ/YjbR family DNA-binding protein | - |
| C2U38_RS06780 () | 1361247..1361828 | - | 582 | WP_016152173.1 | TetR/AcrR family transcriptional regulator | - |
| C2U38_RS06785 () | 1362018..1363130 | + | 1113 | WP_016152174.1 | MBL fold metallo-hydrolase | - |
| C2U38_RS06790 () | 1363148..1363489 | + | 342 | WP_003021996.1 | HTH-type transcriptional activator RhaR | VF |
| C2U38_RS06795 () | 1363511..1363759 | - | 249 | WP_016152175.1 | DUF1158 domain-containing protein | - |
| C2U38_RS06800 () | 1363826..1364944 | - | 1119 | WP_019076232.1 | glutamate--cysteine ligase | - |
| C2U38_RS06805 () | 1365114..1365818 | + | 705 | WP_103283598.1 | GNAT family N-acetyltransferase | - |
| C2U38_RS06810 () | 1365894..1367402 | - | 1509 | WP_103283599.1 | FGGY-family carbohydrate kinase | - |
| C2U38_RS06815 () | 1367435..1368853 | - | 1419 | WP_047358063.1 | L-fucose/L-arabinose isomerase family protein | - |
| C2U38_RS06820 () | 1368888..1369835 | - | 948 | WP_016152180.1 | hypothetical protein | - |
| C2U38_RS06825 () | 1369828..1370658 | - | 831 | WP_016152181.1 | transketolase | - |
| C2U38_RS06830 () | 1370975..1371925 | + | 951 | WP_103283600.1 | sugar-binding transcriptional regulator | - |
| C2U38_RS06835 () | 1372008..1373096 | - | 1089 | WP_103283601.1 | ABC transporter permease | - |
| C2U38_RS06840 () | 1373098..1374624 | - | 1527 | WP_170973930.1 | sugar ABC transporter ATP-binding protein | - |
| C2U38_RS06845 () | 1374624..1375232 | - | 609 | WP_103283602.1 | DUF2291 family protein | - |
| C2U38_RS06850 () | 1375244..1376185 | - | 942 | WP_016152186.1 | D-ribose ABC transporter substrate-binding protein | - |
| C2U38_RS06855 () | 1376303..1376965 | - | 663 | WP_103283603.1 | enterobactin synthase subunit EntD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|