MGE detailed information
MGE type: Genomic_island MGE length: 41886 bp
Accession: NZ_CP026027 Location: 2750373..2792258 Organism: Escherichia coli strain LIM Replicon: chromosome
Accession: NZ_CP026027 Location: 2750373..2792258 Organism: Escherichia coli strain LIM Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2H82_RS14330 () | 2746009..2747670 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| C2H82_RS14335 () | 2747819..2748160 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| C2H82_RS14340 () | 2748222..2748512 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| C2H82_RS14345 () | 2748502..2748939 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| C2H82_RS14350 () | 2749110..2749592 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| C2H82_RS14360 () | 2750373..2751614 | + | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| C2H82_RS14365 () | 2751858..2752814 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| C2H82_RS14370 () | 2752858..2753070 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| C2H82_RS14375 () | 2753199..2754608 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| C2H82_RS14380 () | 2754761..2755387 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| C2H82_RS14385 () | 2755565..2757754 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| C2H82_RS14390 () | 2757751..2759367 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| C2H82_RS14395 () | 2759727..2759990 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| C2H82_RS14400 () | 2760132..2761205 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| C2H82_RS14405 () | 2761198..2761569 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| C2H82_RS14410 () | 2761924..2762787 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| C2H82_RS14415 () | 2762879..2763700 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| C2H82_RS14420 () | 2763917..2764618 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| C2H82_RS14425 () | 2764659..2764895 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| C2H82_RS14430 () | 2764895..2765338 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| C2H82_RS14435 () | 2765362..2765829 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| C2H82_RS14440 () | 2766054..2766368 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| C2H82_RS14445 () | 2766381..2767390 | - | 1010 | Protein_2642 | arsenic transporter | - |
| C2H82_RS14450 () | 2767532..2769235 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| C2H82_RS14455 () | 2769807..2770030 | + | 224 | Protein_2644 | DUF905 domain-containing protein | - |
| C2H82_RS14460 () | 2770133..2770591 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| C2H82_RS14465 () | 2770600..2771082 | + | 483 | WP_001407480.1 | RadC family protein | - |
| C2H82_RS14470 () | 2771091..2771291 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| C2H82_RS14475 () | 2771329..2771646 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C2H82_RS14480 () | 2771667..2771996 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| C2H82_RS14485 () | 2772360..2776940 | - | 4581 | WP_010723187.1 | putative autotransporter | VF |
| C2H82_RS24080 () | 2777005..2777124 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| C2H82_RS14495 () | 2777279..2777497 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| C2H82_RS24085 () | 2777852..2779225 | - | 1374 | Protein_2653 | DUF5507 domain-containing protein | - |
| C2H82_RS24225 () | 2780611..2782863 | + | 2253 | Protein_2654 | alpha-amylase family protein | - |
| C2H82_RS14530 () | 2783199..2784176 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| C2H82_RS14535 () | 2784196..2785464 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| C2H82_RS14540 () | 2785487..2786935 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| C2H82_RS14545 () | 2786949..2788229 | + | 1281 | WP_001087611.1 | 4-aminobutyrate aminotransferase GabT | VF |
| C2H82_RS14550 () | 2788467..2789867 | + | 1401 | WP_001295173.1 | GABA permease | - |
| C2H82_RS14555 () | 2789888..2790550 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| C2H82_RS14560 () | 2790551..2791000 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| C2H82_RS14565 () | 2791084..2791242 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| C2H82_RS14570 () | 2791425..2791724 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| C2H82_RS14575 () | 2791734..2792258 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| C2H82_RS14580 () | 2792305..2792709 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| C2H82_RS14585 () | 2793378..2793827 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| C2H82_RS14590 () | 2793864..2794208 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| C2H82_RS14595 () | 2794360..2794689 | + | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| C2H82_RS14600 () | 2794937..2795182 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| C2H82_RS14605 () | 2795179..2795589 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| C2H82_RS14610 () | 2795562..2796443 | + | 882 | Protein_2671 | ribonucleotide-diphosphate reductase subunit alpha | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.007 |