MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP026027 Location: 1410025..1431699 Organism: Escherichia coli strain LIM Replicon: chromosome
Accession: NZ_CP026027 Location: 1410025..1431699 Organism: Escherichia coli strain LIM Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2H82_RS24290 () | 1406014..1406061 | + | 48 | WP_211180494.1 | protein YnaN | - |
| C2H82_RS07400 () | 1406075..1407058 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| C2H82_RS07410 () | 1407536..1408909 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| C2H82_RS07415 () | 1409038..1409973 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| C2H82_RS07420 () | 1410025..1411260 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| C2H82_RS07425 () | 1411262..1411477 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| C2H82_RS07430 () | 1411556..1411765 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1411581..1411759 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1411581..1411759 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1411581..1411759 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1411581..1411759 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| C2H82_RS07435 () | 1411758..1411952 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| C2H82_RS07440 () | 1412009..1412818 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| C2H82_RS07445 () | 1412811..1415411 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| C2H82_RS07450 () | 1415513..1415788 | - | 276 | WP_000632297.1 | protein RacC | - |
| C2H82_RS07455 () | 1415863..1416033 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| C2H82_RS07460 () | 1416033..1416254 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| C2H82_RS07470 () | 1416696..1417184 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| C2H82_RS07475 () | 1417181..1417336 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| C2H82_RS07485 () | 1417790..1418266 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| C2H82_RS07490 () | 1418390..1418686 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| C2H82_RS07495 () | 1418709..1419131 | + | 423 | WP_000693797.1 | phage protein | - |
| C2H82_RS07500 () | 1419144..1420001 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| C2H82_RS07505 () | 1420008..1420754 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| C2H82_RS07510 () | 1420777..1421229 | + | 453 | Protein_1364 | DUF1627 domain-containing protein | - |
| C2H82_RS07515 () | 1421425..1421610 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| C2H82_RS07520 () | 1421807..1423264 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| C2H82_RS07530 () | 1423402..1423665 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| C2H82_RS07535 () | 1423646..1424005 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| C2H82_RS07545 () | 1424479..1425411 | + | 933 | Protein_1369 | phage tail length tape measure family protein | - |
| C2H82_RS07550 () | 1425414..1425629 | + | 216 | Protein_1370 | Ail/Lom family outer membrane beta-barrel protein | - |
| C2H82_RS07560 () | 1425771..1426751 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| C2H82_RS07565 () | 1426821..1427009 | + | 189 | Protein_1372 | Ail/Lom family outer membrane beta-barrel protein | - |
| C2H82_RS07570 () | 1427074..1430436 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C2H82_RS07575 () | 1430436..1431011 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| C2H82_RS07580 () | 1431109..1431699 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C2H82_RS07585 () | 1432016..1432249 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| C2H82_RS24005 () | 1432318..1432431 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| C2H82_RS07590 () | 1433210..1433644 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| C2H82_RS07595 () | 1433785..1434918 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |