MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93832 bp
Accession: NZ_CP025556 Location: 1..93832 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain PIR00538 Replicon: plasmid pPIR00538
Accession: NZ_CP025556 Location: 1..93832 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain PIR00538 Replicon: plasmid pPIR00538
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0Z08_RS25030 () | 69..503 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| C0Z08_RS25035 () | 739..1062 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| C0Z08_RS25055 () | 1763..2281 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| C0Z08_RS25060 () | 2336..2578 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| C0Z08_RS25065 () | 2647..4644 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| C0Z08_RS25070 () | 4684..5118 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| C0Z08_RS25075 () | 5115..5852 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| C0Z08_RS25760 () | 6101..6259 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| C0Z08_RS25765 () | 6362..7180 | + | 819 | Protein_9 | DUF945 domain-containing protein | - |
| C0Z08_RS25085 () | 7491..7961 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| C0Z08_RS25095 () | 8376..8756 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| C0Z08_RS25100 () | 8949..9635 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| C0Z08_RS25105 () | 9729..9956 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| C0Z08_RS25110 () | 9998..10360 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| C0Z08_RS25115 () | 10375..10686 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| C0Z08_RS25120 () | 10708..11274 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| C0Z08_RS25125 () | 11261..12001 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| C0Z08_RS25130 () | 12001..13422 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| C0Z08_RS25135 () | 13412..14008 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| C0Z08_RS25140 () | 13986..14231 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| C0Z08_RS25145 () | 14228..14743 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C0Z08_RS25150 () | 14878..15099 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| C0Z08_RS25155 () | 15092..15559 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| C0Z08_RS25160 () | 15676..15939 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| C0Z08_RS25165 () | 15955..18603 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| C0Z08_RS25170 () | 18578..18964 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| C0Z08_RS25175 () | 18961..19593 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| C0Z08_RS25180 () | 19590..20582 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| C0Z08_RS25185 () | 20601..20909 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| C0Z08_RS25190 () | 20894..21532 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C0Z08_RS25195 () | 21569..21988 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| C0Z08_RS25200 () | 21985..23811 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C0Z08_RS25205 () | 23822..24037 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| C0Z08_RS25210 () | 24049..24798 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C0Z08_RS25215 () | 25012..25305 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C0Z08_RS25220 () | 25292..25840 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C0Z08_RS25225 () | 25830..27212 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| C0Z08_RS25230 () | 27209..30031 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C0Z08_RS25235 () | 30047..30541 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| C0Z08_RS25240 () | 30577..31308 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| C0Z08_RS25245 () | 31685..33847 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| C0Z08_RS25250 () | 33856..34254 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C0Z08_RS25255 () | 34254..34481 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C0Z08_RS25260 () | 34563..39821 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| C0Z08_RS25265 () | 39841..40581 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| C0Z08_RS25270 () | 40636..41199 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| C0Z08_RS25275 () | 41314..41598 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| C0Z08_RS25280 () | 41611..41766 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| C0Z08_RS25285 () | 41932..42374 | + | 443 | Protein_49 | phospholipase | - |
| C0Z08_RS25295 () | 42553..42819 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| C0Z08_RS25300 () | 43069..43146 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| C0Z08_RS25305 () | 43127..44008 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| C0Z08_RS25315 () | 44868..45089 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| C0Z08_RS25320 () | 45186..45944 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| C0Z08_RS25325 () | 46211..46768 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| C0Z08_RS25330 () | 46858..47757 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| C0Z08_RS25700 () | 47754..47900 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| C0Z08_RS25335 () | 47890..48543 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| C0Z08_RS25340 () | 48788..49138 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| C0Z08_RS25345 () | 49123..49335 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| C0Z08_RS25350 () | 49767..50642 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| C0Z08_RS25355 () | 50895..51452 | - | 558 | WP_010999940.1 | membrane protein | - |
| C0Z08_RS25360 () | 51467..52159 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| C0Z08_RS25365 () | 52152..54560 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| C0Z08_RS25370 () | 54788..55306 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| C0Z08_RS25375 () | 55581..55883 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| C0Z08_RS25385 () | 56602..56983 | + | 382 | Protein_67 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C0Z08_RS25390 () | 57152..57596 | + | 445 | Protein_68 | site-specific integrase | - |
| C0Z08_RS25395 () | 57855..58844 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| C0Z08_RS25400 () | 59338..59634 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| C0Z08_RS25410 () | 60118..60639 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| C0Z08_RS25415 () | 61315..61533 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C0Z08_RS25420 () | 61535..61840 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C0Z08_RS25425 () | 61842..62132 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| C0Z08_RS25430 () | 62129..62650 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| C0Z08_RS25435 () | 62685..63467 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| C0Z08_RS25440 () | 63476..64189 | + | 714 | Protein_77 | EAL domain-containing protein | - |
| C0Z08_RS25450 () | 64193..64702 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| C0Z08_RS25455 () | 64696..65181 | + | 486 | WP_000905606.1 | membrane protein | - |
| C0Z08_RS25705 () | 65458..65745 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| C0Z08_RS25460 () | 65901..66461 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| C0Z08_RS25465 () | 66528..66878 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| C0Z08_RS25470 () | 66935..67359 | + | 425 | Protein_83 | IS200/IS605 family transposase | - |
| C0Z08_RS25475 () | 67486..68136 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| C0Z08_RS25480 () | 68397..69122 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| C0Z08_RS25485 () | 69403..71178 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| C0Z08_RS25770 () | 71230..71397 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| C0Z08_RS25490 () | 71360..72127 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| C0Z08_RS25495 () | 72301..72465 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| C0Z08_RS25500 () | 72639..73532 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| C0Z08_RS25505 () | 74141..75178 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| C0Z08_RS25510 () | 75367..76392 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| C0Z08_RS25515 () | 76325..77989 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| C0Z08_RS25520 () | 77973..78533 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| C0Z08_RS25525 () | 78740..79480 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| C0Z08_RS25535 () | 80135..80623 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| C0Z08_RS25540 () | 80882..81997 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| C0Z08_RS25545 () | 82083..82499 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| C0Z08_RS25550 () | 82683..83018 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| C0Z08_RS25555 () | 83075..83641 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| C0Z08_RS25560 () | 83673..84614 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| C0Z08_RS25565 () | 85029..86234 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| C0Z08_RS25570 () | 86234..87208 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| C0Z08_RS25575 () | 87290..88564 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| C0Z08_RS25580 () | 88564..88986 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C0Z08_RS25585 () | 89497..89967 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| C0Z08_RS25590 () | 89960..90316 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| C0Z08_RS25600 () | 90698..91378 | + | 681 | WP_000088645.1 | DNA methylase | - |
| C0Z08_RS25605 () | 91378..91599 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| C0Z08_RS25610 () | 91655..92068 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| C0Z08_RS25615 () | 92140..92904 | + | 765 | WP_001246548.1 | membrane protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|