MGE detailed information
MGE type: Conjugative plasmid MGE length: 76754 bp
Accession: NZ_CP024888 Location: 1..76754 Organism: Escherichia coli strain AR_0019 Replicon: plasmid tig00000138_pilon
Accession: NZ_CP024888 Location: 1..76754 Organism: Escherichia coli strain AR_0019 Replicon: plasmid tig00000138_pilon
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM346_RS24245 () | 71..418 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| AM346_RS00015 () | 544..3174 | + | 2631 | WP_032152342.1 | type IV secretion system protein TraC | - |
| AM346_RS00020 () | 3171..3557 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| AM346_RS00025 () | 3554..4186 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| AM346_RS00030 () | 4183..5175 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| AM346_RS00035 () | 5205..5510 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| AM346_RS00040 () | 5519..6157 | + | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AM346_RS00045 () | 6154..8004 | + | 1851 | WP_000821860.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AM346_RS00050 () | 8031..8288 | + | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| AM346_RS00055 () | 8281..9024 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AM346_RS00060 () | 9038..9382 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| AM346_RS00065 () | 9501..9785 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AM346_RS00070 () | 9772..10317 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AM346_RS00075 () | 10247..10594 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| AM346_RS00080 () | 10542..10967 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| AM346_RS00085 () | 10954..12327 | + | 1374 | WP_001535740.1 | conjugal transfer protein TraH | - |
| AM346_RS00090 () | 12324..15149 | + | 2826 | WP_100266612.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AM346_RS00095 () | 15146..15655 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| AM346_RS00100 () | 15669..16400 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| AM346_RS00105 () | 16603..17340 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| AM346_RS00110 () | 17391..17588 | + | 198 | WP_100266613.1 | hypothetical protein | - |
| AM346_RS00115 () | 17603..18028 | + | 426 | WP_000422741.1 | IS66 family insertion sequence hypothetical protein | - |
| AM346_RS00120 () | 18025..18375 | + | 351 | WP_000624722.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| AM346_RS00125 () | 18406..20019 | + | 1614 | WP_000080200.1 | IS66-like element ISEc23 family transposase | - |
| AM346_RS00130 () | 20051..22219 | + | 2169 | Protein_25 | type IV conjugative transfer system coupling protein TraD | - |
| AM346_RS00135 () | 22219..27489 | + | 5271 | WP_100266614.1 | conjugative transfer relaxase/helicase TraI | - |
| AM346_RS00140 () | 27509..28255 | + | 747 | WP_019842127.1 | conjugal transfer pilus acetylase TraX | - |
| AM346_RS00145 () | 28310..28867 | + | 558 | WP_000139329.1 | fertility inhibition protein FinO | - |
| AM346_RS00155 () | 29964..30425 | + | 462 | WP_019842128.1 | thermonuclease family protein | - |
| AM346_RS24475 () | 30528..30912 | + | 385 | Protein_30 | hypothetical protein | - |
| AM346_RS00165 () | 31065..31502 | + | 438 | WP_000872609.1 | hypothetical protein | - |
| - () | 31597..31653 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 31597..31653 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 31597..31653 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 31597..31653 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| AM346_RS00175 () | 31701..31850 | + | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| AM346_RS00180 () | 32135..32392 | + | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| AM346_RS00190 () | 32628..32702 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| AM346_RS00195 () | 32695..33552 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| AM346_RS00210 () | 34255..34515 | + | 261 | WP_019842130.1 | hypothetical protein | - |
| AM346_RS00215 () | 34622..34885 | + | 264 | WP_001089473.1 | hypothetical protein | - |
| AM346_RS00220 () | 34875..35174 | + | 300 | WP_001528606.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AM346_RS00225 () | 35210..35875 | - | 666 | WP_001535733.1 | hypothetical protein | - |
| AM346_RS00230 () | 36063..36923 | - | 861 | WP_000027057.1 | class A broad-spectrum beta-lactamase TEM-1 | - |
| AM346_RS00235 () | 37106..37663 | - | 558 | WP_001235713.1 | recombinase family protein | - |
| AM346_RS00240 () | 37827..38789 | + | 963 | Protein_42 | DUF4158 domain-containing protein | - |
| AM346_RS00245 () | 38881..40380 | + | 1500 | WP_000174402.1 | IS21-like element ISEc10 family transposase | - |
| AM346_RS00250 () | 40377..41132 | + | 756 | WP_000065240.1 | IS21-like element ISEc10 family helper ATPase IstB | - |
| AM346_RS00255 () | 41197..43248 | + | 2052 | Protein_45 | Tn3 family transposase | - |
| AM346_RS00260 () | 43816..44379 | - | 564 | WP_000351266.1 | pentapeptide repeat-containing protein | - |
| AM346_RS00265 () | 44383..45114 | - | 732 | WP_000155032.1 | ATP-binding cassette domain-containing protein | - |
| AM346_RS00270 () | 45111..45836 | - | 726 | WP_000258040.1 | microcin B17 immunity protein McbE | - |
| AM346_RS00275 () | 45846..47036 | - | 1191 | WP_000611492.1 | YcaO-like family protein | - |
| AM346_RS00280 () | 47017..47835 | - | 819 | WP_001528601.1 | SagB/ThcOx family dehydrogenase | - |
| AM346_RS00285 () | 47837..48724 | - | 888 | WP_000243884.1 | McbB family protein | - |
| AM346_RS00290 () | 48751..48960 | - | 210 | WP_001535752.1 | microcin B17 | - |
| AM346_RS00295 () | 49490..49942 | + | 453 | WP_000670962.1 | N-acetyltransferase | - |
| AM346_RS00305 () | 50345..50695 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| AM346_RS00310 () | 50698..51660 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| AM346_RS00315 () | 52196..53098 | + | 903 | WP_077759229.1 | DUF1281 domain-containing protein | - |
| AM346_RS00320 () | 53095..53406 | + | 312 | WP_001310011.1 | hypothetical protein | - |
| AM346_RS00325 () | 53482..54165 | + | 684 | WP_000086169.1 | DNA methylase | - |
| AM346_RS00330 () | 54166..54387 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| AM346_RS00335 () | 54401..54835 | + | 435 | WP_000274482.1 | DUF1380 family protein | - |
| AM346_RS24255 () | 54880..55650 | + | 771 | WP_001004562.1 | hypothetical protein | - |
| AM346_RS00345 () | 56189..56491 | + | 303 | WP_001364029.1 | antirestriction protein | - |
| AM346_RS00350 () | 56538..56957 | + | 420 | WP_000271737.1 | DUF1380 family protein | - |
| AM346_RS00355 () | 56957..57148 | + | 192 | WP_001027049.1 | hypothetical protein | - |
| AM346_RS24480 () | 57127..57435 | - | 309 | WP_050576143.1 | hypothetical protein | - |
| AM346_RS00370 () | 58116..58346 | + | 231 | WP_000218644.1 | hypothetical protein | - |
| AM346_RS00375 () | 58398..59759 | + | 1362 | WP_000170705.1 | DUF3560 domain-containing protein | - |
| AM346_RS00380 () | 59806..60369 | + | 564 | WP_033551414.1 | class I SAM-dependent methyltransferase | - |
| AM346_RS00405 () | 61200..61727 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| AM346_RS00410 () | 61785..62018 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| AM346_RS00415 () | 62079..64043 | + | 1965 | WP_000117316.1 | ParB/RepB/Spo0J family partition protein | - |
| AM346_RS00420 () | 64112..64546 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| AM346_RS00425 () | 64543..65262 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 65274..65498 | + | 225 | NuclAT_0 | - | - |
| - () | 65274..65498 | + | 225 | NuclAT_0 | - | - |
| - () | 65274..65498 | + | 225 | NuclAT_0 | - | - |
| - () | 65274..65498 | + | 225 | NuclAT_0 | - | - |
| - () | 65431..65496 | + | 66 | - | - | Antitoxin Detail |
| AM346_RS00430 () | 65542..65700 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| AM346_RS00450 () | 66616..66912 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| AM346_RS00455 () | 67023..67844 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| AM346_RS00460 () | 68141..68743 | - | 603 | Protein_77 | transglycosylase SLT domain-containing protein | - |
| AM346_RS00465 () | 69064..69447 | + | 384 | WP_001151538.1 | relaxosome protein TraM | - |
| AM346_RS00470 () | 69634..70323 | + | 690 | WP_016239105.1 | conjugal transfer transcriptional regulator TraJ | - |
| AM346_RS00475 () | 70422..70817 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| AM346_RS00480 () | 70850..71209 | + | 360 | WP_019842162.1 | type IV conjugative transfer system pilin TraA | - |
| AM346_RS00485 () | 71224..71535 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| AM346_RS00490 () | 71557..72123 | + | 567 | WP_000399801.1 | type IV conjugative transfer system protein TraE | - |
| AM346_RS00495 () | 72110..72838 | + | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| AM346_RS00500 () | 72838..74289 | + | 1452 | WP_016239102.1 | conjugal transfer protein TraB | - |
| AM346_RS00505 () | 74258..74854 | + | 597 | WP_024193850.1 | conjugal transfer protein TraP | - |
| AM346_RS00510 () | 74808..75158 | + | 351 | WP_071586941.1 | conjugal transfer protein TrbD | - |
| AM346_RS00515 () | 75158..75673 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AM346_RS00520 () | 75808..76029 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| AM346_RS00525 () | 76022..76499 | + | 478 | Protein_90 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|