MGE detailed information
MGE type: Conjugative plasmid MGE length: 111776 bp
Accession: NZ_CP024721 Location: 1..111776 Organism: Escherichia coli isolate NQ3 Replicon: plasmid p1NQ3
Accession: NZ_CP024721 Location: 1..111776 Organism: Escherichia coli isolate NQ3 Replicon: plasmid p1NQ3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUB98_RS27000 () | 171..446 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CUB98_RS27005 () | 446..730 | - | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CUB98_RS27010 () | 1335..2087 | + | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| CUB98_RS27015 () | 2133..3098 | - | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| CUB98_RS27020 () | 3131..3511 | - | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| CUB98_RS27025 () | 3536..4426 | - | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| CUB98_RS27035 () | 4827..5267 | + | 441 | Protein_7 | zinc-binding dehydrogenase | - |
| CUB98_RS27040 () | 5398..6276 | + | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| CUB98_RS27045 () | 6266..7153 | + | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| CUB98_RS27050 () | 7164..7988 | + | 825 | WP_000922702.1 | phosphodiesterase | - |
| CUB98_RS27055 () | 7994..9067 | + | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| CUB98_RS27060 () | 9060..10370 | + | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| CUB98_RS27065 () | 10429..10737 | - | 309 | Protein_13 | IS4 family transposase ISEc13 | Transposase |
| CUB98_RS27070 () | 10814..11047 | - | 234 | Protein_14 | Tn3 family transposase | - |
| CUB98_RS27075 () | 11069..12265 | - | 1197 | Protein_15 | IS3 family transposase | - |
| CUB98_RS27080 () | 12290..12994 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CUB98_RS27085 () | 13052..13582 | - | 531 | Protein_17 | histidine-type phosphatase | - |
| CUB98_RS27090 () | 13704..14189 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| CUB98_RS27095 () | 14214..14699 | - | 486 | WP_001267177.1 | TlpA family protein disulfide reductase | - |
| CUB98_RS27100 () | 14686..15381 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| CUB98_RS27105 () | 15386..16516 | - | 1131 | WP_000729220.1 | ABC transporter permease | - |
| CUB98_RS27110 () | 16506..17789 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| CUB98_RS27115 () | 17792..19171 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| CUB98_RS27120 () | 19275..19802 | - | 528 | WP_000178050.1 | iron transporter | - |
| CUB98_RS27125 () | 19843..21729 | - | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| CUB98_RS27135 () | 22076..22891 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| CUB98_RS27140 () | 23117..23821 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CUB98_RS27150 () | 23874..28490 | + | 4617 | Protein_28 | Multifunctional conjugation protein TraI | Relaxase |
| CUB98_RS27155 () | 28510..29256 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| CUB98_RS27160 () | 29315..30175 | + | 861 | WP_000704528.1 | putative protein YcjY | VF |
| CUB98_RS27165 () | 30278..30838 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| CUB98_RS27170 () | 30967..31179 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| CUB98_RS27175 () | 31424..31885 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| CUB98_RS27180 () | 31931..32140 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| CUB98_RS27185 () | 32178..32768 | + | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| CUB98_RS27190 () | 33008..33268 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| CUB98_RS27200 () | 33493..33567 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CUB98_RS27205 () | 33560..34417 | + | 858 | WP_000130647.1 | incFII family plasmid replication initiator RepA | - |
| CUB98_RS27215 () | 35443..36303 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CUB98_RS27220 () | 36486..37043 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CUB98_RS27225 () | 37207..37416 | + | 210 | Protein_41 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CUB98_RS27230 () | 37470..38174 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CUB98_RS27235 () | 38273..39346 | + | 1074 | Protein_43 | Methyl-accepting chemotaxis protein McpQ | VF |
| CUB98_RS27240 () | 39639..40100 | - | 462 | WP_000978817.1 | thermonuclease family protein | - |
| CUB98_RS27245 () | 40294..40998 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CUB98_RS28280 () | 41039..41218 | - | 180 | Protein_46 | recombinase family protein | - |
| CUB98_RS28070 () | 41344..41694 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| CUB98_RS27260 () | 41897..42910 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| CUB98_RS27265 () | 43068..43541 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| CUB98_RS27270 () | 43672..44460 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CUB98_RS27275 () | 44666..45013 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CUB98_RS27280 () | 45007..45846 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CUB98_RS27290 () | 45974..46474 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| CUB98_RS27295 () | 46650..47432 | - | 783 | WP_001163403.1 | IS21 family transposase IS1326 | Transposase |
| CUB98_RS27300 () | 47422..48945 | - | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| CUB98_RS27305 () | 49068..50612 | + | 1545 | WP_000287615.1 | IS3 family transposase IS1353 | Transposase |
| CUB98_RS27310 () | 50663..51523 | - | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| CUB98_RS27315 () | 51526..53205 | - | 1680 | WP_000179844.1 | DDE-type integrase/transposase/recombinase | - |
| CUB98_RS27325 () | 53280..53948 | - | 669 | WP_001300294.1 | putative signaling protein | VF |
| CUB98_RS27330 () | 53984..54220 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| CUB98_RS27335 () | 54217..54579 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| CUB98_RS27340 () | 54597..56291 | - | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| CUB98_RS27345 () | 56343..56765 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| CUB98_RS27350 () | 56801..57076 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| CUB98_RS27355 () | 57090..57440 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| CUB98_RS27360 () | 57512..57946 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| CUB98_RS27365 () | 58053..58750 | - | 698 | Protein_67 | IS1 family transposase IS1R | Transposase |
| CUB98_RS27375 () | 58999..59400 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CUB98_RS28075 () | 59333..59590 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CUB98_RS27380 () | 59683..60336 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CUB98_RS27385 () | 60435..63236 | - | 2802 | Protein_71 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CUB98_RS27390 () | 63301..64005 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CUB98_RS27400 () | 64074..66701 | - | 2628 | WP_001064239.1 | type IV secretion system protein TraC | - |
| CUB98_RS27405 () | 66861..67082 | - | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| CUB98_RS27410 () | 67217..67732 | - | 516 | WP_000809893.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CUB98_RS27415 () | 67729..67980 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| CUB98_RS27420 () | 67973..68326 | - | 354 | WP_071528018.1 | conjugal transfer protein TrbD | - |
| CUB98_RS27425 () | 68280..68864 | - | 585 | WP_000002795.1 | conjugal transfer protein TraP | - |
| CUB98_RS27430 () | 68854..70281 | - | 1428 | WP_000146638.1 | conjugal transfer protein TraB | - |
| CUB98_RS27435 () | 70281..70985 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| CUB98_RS27440 () | 70996..71562 | - | 567 | WP_000399804.1 | type IV conjugative transfer system protein TraE | - |
| CUB98_RS27445 () | 71584..71895 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CUB98_RS27450 () | 71900..72262 | - | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| CUB98_RS27455 () | 72296..72523 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CUB98_RS27460 () | 72617..73303 | - | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| CUB98_RS27465 () | 73497..73880 | - | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| CUB98_RS27470 () | 74166..74813 | + | 648 | WP_000614282.1 | hypothetical protein | VF |
| CUB98_RS27475 () | 75110..75931 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CUB98_RS27480 () | 76052..76339 | - | 288 | WP_099996262.1 | hypothetical protein | - |
| CUB98_RS27505 () | 77258..77416 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 77460..77684 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 77460..77684 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 77460..77684 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 77460..77684 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| CUB98_RS28080 () | 77496..77684 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| CUB98_RS27510 () | 77696..78415 | - | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| CUB98_RS27515 () | 78412..78846 | - | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| CUB98_RS27520 () | 78901..80859 | - | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| CUB98_RS27525 () | 80918..81151 | - | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| CUB98_RS27530 () | 81207..81734 | - | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| CUB98_RS27565 () | 82598..83161 | - | 564 | WP_012783964.1 | class I SAM-dependent methyltransferase | - |
| CUB98_RS27570 () | 83208..84569 | - | 1362 | WP_000170728.1 | DUF3560 domain-containing protein | - |
| CUB98_RS27575 () | 84621..84851 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CUB98_RS27590 () | 85886..86077 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CUB98_RS27595 () | 86074..86496 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CUB98_RS27600 () | 86543..86845 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CUB98_RS28085 () | 87385..88161 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| CUB98_RS27615 () | 88212..88646 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| CUB98_RS27620 () | 88660..88881 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CUB98_RS27625 () | 88882..89565 | - | 684 | WP_000086185.1 | DNA methylase | - |
| CUB98_RS28285 () | 89642..89946 | - | 305 | Protein_107 | hypothetical protein | - |
| CUB98_RS27635 () | 90125..90559 | + | 435 | WP_001309734.1 | IS66 family insertion sequence hypothetical protein | - |
| CUB98_RS27640 () | 90556..90906 | + | 351 | WP_000624688.1 | IS66 family transposase ISEc47 | Transposase |
| CUB98_RS27645 () | 90937..92550 | + | 1614 | WP_000080172.1 | IS66 family transposase ISEc43 | Transposase |
| CUB98_RS27650 () | 92577..93401 | - | 825 | WP_099996264.1 | DUF1281 domain-containing protein | - |
| CUB98_RS27665 () | 94268..95239 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CUB98_RS27670 () | 95239..96405 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CUB98_RS27675 () | 96993..97748 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CUB98_RS27680 () | 98522..99328 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| CUB98_RS27685 () | 99329..99634 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CUB98_RS27690 () | 99636..99854 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CUB98_RS27695 () | 100400..100912 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| CUB98_RS27700 () | 100946..102079 | - | 1134 | WP_000545986.1 | DUF3800 domain-containing protein | - |
| CUB98_RS27705 () | 102246..103019 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| CUB98_RS27710 () | 103032..103532 | - | 501 | WP_000528932.1 | hypothetical protein | - |
| CUB98_RS27715 () | 103797..104027 | + | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CUB98_RS27725 () | 104109..104806 | + | 698 | Protein_123 | IS1 family transposase IS1A | Transposase |
| CUB98_RS27730 () | 104986..105499 | - | 514 | Protein_124 | DUF4113 domain-containing protein | - |
| CUB98_RS28290 () | 105560..105664 | - | 105 | Protein_125 | AAA family ATPase | - |
| CUB98_RS27740 () | 105666..105989 | - | 324 | Protein_126 | IS21 family transposase IS21 | Transposase |
| CUB98_RS27750 () | 106735..107712 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| CUB98_RS27755 () | 107997..108737 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| CUB98_RS27760 () | 108858..109040 | - | 183 | WP_042344623.1 | hypothetical protein | - |
| CUB98_RS27770 () | 109383..109690 | - | 308 | Protein_130 | type II toxin-antitoxin system ParD family antitoxin | - |
| CUB98_RS27780 () | 110183..111352 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| CUB98_RS27785 () | 111385..111513 | + | 129 | Protein_132 | IS481 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|