MGE detailed information
MGE type: Conjugative plasmid MGE length: 105489 bp
Accession: NZ_CP024481 Location: 1..105489 Organism: Escherichia coli strain 2011C-4315 Replicon: plasmid unnamed2
Accession: NZ_CP024481 Location: 1..105489 Organism: Escherichia coli strain 2011C-4315 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5958_RS28890 () | 1739..2023 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| A5958_RS28895 () | 2023..2298 | + | 276 | WP_001582571.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A5958_RS28900 () | 2404..2682 | + | 279 | WP_001105069.1 | hypothetical protein | - |
| A5958_RS30130 () | 2877..3143 | - | 267 | WP_000627829.1 | hypothetical protein | - |
| A5958_RS28910 () | 3143..3637 | - | 495 | WP_001582574.1 | hypothetical protein | - |
| A5958_RS28915 () | 3693..4295 | - | 603 | WP_000517695.1 | hypothetical protein | - |
| A5958_RS28925 () | 4649..5995 | + | 1347 | WP_001132032.1 | hypothetical protein | - |
| A5958_RS28935 () | 6274..8154 | + | 1881 | WP_001619592.1 | colicin 1A | - |
| A5958_RS28940 () | 8176..8511 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| A5958_RS28950 () | 8640..8987 | + | 348 | WP_001582578.1 | hypothetical protein | - |
| A5958_RS28955 () | 9007..9597 | - | 591 | WP_000194572.1 | hypothetical protein | - |
| A5958_RS28960 () | 9597..9851 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| A5958_RS28970 () | 10420..10833 | + | 414 | WP_032082921.1 | hypothetical protein | - |
| A5958_RS28975 () | 10835..11614 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| A5958_RS28980 () | 11794..12438 | + | 645 | WP_001144036.1 | ParA family protein | - |
| A5958_RS28985 () | 12525..12833 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| A5958_RS28990 () | 13247..14227 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| A5958_RS28995 () | 14220..14636 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| A5958_RS29000 () | 14638..15912 | - | 1275 | WP_064460382.1 | Y-family DNA polymerase | - |
| A5958_RS29005 () | 15912..16349 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| A5958_RS29010 () | 16346..16594 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| A5958_RS29020 () | 17012..17914 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| A5958_RS29025 () | 17911..18222 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| A5958_RS29030 () | 18298..18981 | + | 684 | WP_000086147.1 | DNA methylase | - |
| A5958_RS29035 () | 18982..19203 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| A5958_RS29040 () | 19217..19651 | + | 435 | WP_064460383.1 | DUF1380 family protein | - |
| A5958_RS30135 () | 19697..20473 | + | 777 | WP_047089256.1 | hypothetical protein | - |
| A5958_RS29055 () | 21008..21310 | + | 303 | WP_077884575.1 | antirestriction protein | - |
| A5958_RS29060 () | 21357..21779 | + | 423 | WP_000271763.1 | DUF1380 family protein | - |
| A5958_RS29065 () | 21776..21967 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| A5958_RS30015 () | 22039..22353 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| A5958_RS29075 () | 22737..23264 | + | 528 | WP_001276123.1 | single-stranded DNA-binding protein | - |
| A5958_RS29080 () | 23321..23554 | + | 234 | WP_001042947.1 | DUF905 domain-containing protein | - |
| A5958_RS29085 () | 23616..24074 | + | 459 | Protein_34 | ParB/Srx family N-terminal domain-containing protein | - |
| A5958_RS29090 () | 24267..25808 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| A5958_RS29095 () | 25823..26569 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| A5958_RS29100 () | 26653..28161 | + | 1509 | Protein_37 | ParB/RepB/Spo0J family partition protein | - |
| A5958_RS29105 () | 28216..28650 | + | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| A5958_RS29110 () | 28647..29366 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| A5958_RS29115 () | 29363..29959 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| A5958_RS29125 () | 30422..30922 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| A5958_RS29130 () | 31062..31361 | - | 300 | WP_001348082.1 | hypothetical protein | - |
| A5958_RS29140 () | 31651..32085 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| A5958_RS29145 () | 32179..32445 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| A5958_RS29150 () | 32510..33388 | + | 879 | WP_061157248.1 | Recombination-promoting nuclease RpnA | VF |
| A5958_RS29155 () | 33450..33656 | + | 207 | WP_001532090.1 | hypothetical protein | VF |
| A5958_RS29160 () | 33687..33938 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| A5958_RS29165 () | 34047..34274 | - | 228 | WP_072279834.1 | hypothetical protein | - |
| A5958_RS29175 () | 34517..35365 | + | 849 | WP_001077032.1 | DUF4942 domain-containing protein | - |
| A5958_RS29180 () | 35451..35786 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| A5958_RS29185 () | 36020..36352 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| A5958_RS29190 () | 36363..39062 | + | 2700 | WP_064460386.1 | Protein TraI | Relaxase |
| A5958_RS29195 () | 39088..39660 | + | 573 | WP_000332079.1 | hypothetical protein | - |
| A5958_RS29200 () | 39710..41899 | - | 2190 | WP_061348417.1 | peptidase domain-containing ABC transporter | - |
| A5958_RS29205 () | 41899..43152 | - | 1254 | WP_001685252.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| A5958_RS29210 () | 43255..43890 | - | 636 | WP_000999378.1 | CPBP family intramembrane metalloprotease | - |
| A5958_RS29225 () | 44675..46966 | - | 2292 | WP_072279833.1 | conjugal transfer protein TrbC | - |
| A5958_RS29230 () | 46959..48029 | - | 1071 | WP_052895276.1 | IncI1-type conjugal transfer protein TrbB | - |
| A5958_RS29235 () | 48048..49256 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 49436..49498 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 49436..49498 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 49436..49498 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 49436..49498 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| A5958_RS29240 () | 49548..49700 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| A5958_RS29245 () | 49772..50023 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| A5958_RS29250 () | 50164..50814 | + | 651 | WP_024244070.1 | IS66 family transposase IS679 | Transposase |
| A5958_RS29255 () | 50814..51161 | + | 348 | WP_024244069.1 | IS66 family transposase ISCro1 | Transposase |
| A5958_RS29260 () | 51181..52751 | + | 1571 | Protein_64 | IS66 family transposase ISCro1 | Transposase |
| A5958_RS29265 () | 52895..53034 | + | 140 | Protein_65 | transposase domain-containing protein | - |
| A5958_RS29270 () | 53076..53603 | - | 528 | WP_000182867.1 | hypothetical protein | - |
| A5958_RS29275 () | 54093..54788 | - | 696 | WP_050866967.1 | lactate utilization protein C | - |
| A5958_RS29280 () | 54792..56207 | - | 1416 | WP_000054156.1 | iron-sulfur cluster-binding protein | - |
| A5958_RS29285 () | 56218..56937 | - | 720 | WP_001102090.1 | (Fe-S)-binding protein | - |
| A5958_RS29290 () | 56987..58543 | - | 1557 | WP_000544018.1 | L-lactate permease | - |
| A5958_RS29295 () | 59122..59505 | + | 384 | WP_001201739.1 | IS66 family transposase IS682 | Transposase |
| A5958_RS29300 () | 59502..59849 | + | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| A5958_RS29305 () | 59899..61433 | + | 1535 | Protein_73 | IS66 family transposase ISSgsp1 | Transposase |
| A5958_RS29310 () | 61467..61808 | + | 342 | Protein_74 | transposase | - |
| - () | 62178..62229 | - | 52 | NuclAT_1 | - | - |
| - () | 62178..62229 | - | 52 | NuclAT_1 | - | - |
| - () | 62178..62229 | - | 52 | NuclAT_1 | - | - |
| - () | 62178..62229 | - | 52 | NuclAT_1 | - | - |
| A5958_RS30020 () | 62715..62891 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| A5958_RS29325 () | 63283..63492 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| A5958_RS29330 () | 63564..64226 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| A5958_RS29335 () | 64297..66465 | - | 2169 | WP_061348430.1 | DotA/TraY family protein | - |
| A5958_RS29340 () | 66562..67146 | - | 585 | WP_061348429.1 | IncI1-type conjugal transfer protein TraX | - |
| A5958_RS29345 () | 67175..68377 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| A5958_RS29350 () | 68344..68958 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| A5958_RS29355 () | 68958..72002 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| A5958_RS29360 () | 72092..72892 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| A5958_RS29365 () | 72876..73064 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| A5958_RS29370 () | 73128..73532 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| A5958_RS29375 () | 73583..74110 | - | 528 | WP_064460379.1 | conjugal transfer protein TraQ | - |
| A5958_RS29380 () | 74110..74814 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| A5958_RS29385 () | 74814..76103 | - | 1290 | WP_061348428.1 | conjugal transfer protein TraO | - |
| A5958_RS29390 () | 76106..77089 | - | 984 | WP_061348427.1 | hypothetical protein | VF |
| A5958_RS29395 () | 77100..77792 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| A5958_RS29400 () | 77789..78136 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| A5958_RS29405 () | 78154..81921 | - | 3768 | WP_064460380.1 | hypothetical protein | - |
| A5958_RS29410 () | 82011..82562 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| A5958_RS29415 () | 82577..82867 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| A5958_RS29420 () | 82864..84012 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| A5958_RS29425 () | 84009..84827 | - | 819 | WP_064460381.1 | hypothetical protein | VF |
| A5958_RS29430 () | 84824..85282 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| A5958_RS29435 () | 85677..86261 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| A5958_RS29440 () | 86321..87523 | - | 1203 | WP_061348425.1 | conjugal transfer protein TraF | - |
| A5958_RS29445 () | 87609..88433 | - | 825 | WP_001238942.1 | hypothetical protein | - |
| A5958_RS29450 () | 88641..88766 | + | 126 | Protein_101 | transposase | - |
| A5958_RS29455 () | 88823..90115 | - | 1293 | WP_001350014.1 | hypothetical protein | VF |
| A5958_RS29460 () | 90115..90771 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| A5958_RS29465 () | 90756..91316 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| A5958_RS29470 () | 91326..91940 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| A5958_RS29475 () | 91957..93042 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| A5958_RS29480 () | 93055..94608 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| A5958_RS29485 () | 94619..95071 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| A5958_RS29490 () | 95058..96353 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| A5958_RS29495 () | 96346..98028 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| A5958_RS29500 () | 98042..98479 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| A5958_RS29505 () | 98479..99546 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| A5958_RS29520 () | 100465..100761 | - | 297 | WP_086055099.1 | pilJ | - |
| A5958_RS29525 () | 100795..101049 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| A5958_RS29535 () | 101211..101762 | - | 552 | WP_000744646.1 | hypothetical protein | - |
| A5958_RS29545 () | 101935..102618 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| A5958_RS29550 () | 102871..103404 | - | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| A5958_RS29560 () | 103846..104133 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| A5958_RS29565 () | 104051..104314 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|