MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 92114 bp
Accession: NZ_CP024477 Location: 5256358..5348471 Organism: Pseudomonas aeruginosa strain 12939 Replicon: chromosome
Accession: NZ_CP024477 Location: 5256358..5348471 Organism: Pseudomonas aeruginosa strain 12939 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS058_RS25045 () | 5251982..5256127 | + | 4146 | WP_034024697.1 | two-partner secretion system exoprotein TpsA4 | - |
| CS058_RS25050 () | 5256499..5257365 | + | 867 | WP_023108753.1 | ParA family protein | - |
| CS058_RS25055 () | 5257367..5258104 | + | 738 | WP_023108754.1 | hypothetical protein | - |
| CS058_RS25060 () | 5258101..5258598 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| CS058_RS25065 () | 5258604..5259056 | + | 453 | Protein_4859 | hypothetical protein | - |
| CS058_RS25070 () | 5259117..5259746 | + | 630 | WP_044060901.1 | hypothetical protein | - |
| CS058_RS25075 () | 5259746..5260447 | + | 702 | WP_023082648.1 | DUF2786 domain-containing protein | - |
| CS058_RS25080 () | 5260444..5261151 | + | 708 | WP_023082649.1 | HNH endonuclease | - |
| CS058_RS25085 () | 5261135..5261359 | + | 225 | WP_009315888.1 | hypothetical protein | - |
| CS058_RS25090 () | 5261356..5262699 | + | 1344 | WP_023082650.1 | replicative DNA helicase | - |
| CS058_RS31885 () | 5263138..5263584 | - | 447 | WP_003117028.1 | hypothetical protein | - |
| CS058_RS31890 () | 5263768..5264727 | + | 960 | WP_023082651.1 | hypothetical protein | - |
| CS058_RS25105 () | 5265134..5265319 | + | 186 | WP_003157042.1 | hypothetical protein | - |
| CS058_RS25110 () | 5265309..5265836 | + | 528 | WP_003448815.1 | hypothetical protein | - |
| CS058_RS25115 () | 5265833..5266090 | + | 258 | WP_003117031.1 | hypothetical protein | - |
| CS058_RS31815 () | 5266083..5266577 | + | 495 | WP_004347979.1 | hypothetical protein | - |
| CS058_RS25125 () | 5266570..5266803 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| CS058_RS25130 () | 5266803..5267825 | + | 1023 | WP_003117033.1 | nucleoid-associated protein YejK | - |
| CS058_RS25135 () | 5267822..5268712 | + | 891 | WP_003117034.1 | DNA adenine methylase | - |
| CS058_RS25140 () | 5268733..5269002 | + | 270 | WP_003117035.1 | Arc family DNA-binding protein | - |
| CS058_RS25145 () | 5268999..5270735 | + | 1737 | WP_003117036.1 | ParB family protein | - |
| CS058_RS25150 () | 5270763..5271530 | + | 768 | WP_003117037.1 | DUF2857 domain-containing protein | - |
| CS058_RS25155 () | 5271527..5272846 | + | 1320 | WP_023093020.1 | hypothetical protein | - |
| CS058_RS25175 () | 5275193..5275921 | + | 729 | WP_099887686.1 | TIGR03761 family integrating conjugative element protein | - |
| CS058_RS25180 () | 5275927..5276475 | + | 549 | WP_099887689.1 | DUF3158 family protein | - |
| CS058_RS25185 () | 5276522..5277361 | + | 840 | WP_003105750.1 | Rha family transcriptional regulator | - |
| CS058_RS25190 () | 5277391..5277879 | + | 489 | WP_004352840.1 | single-stranded DNA-binding protein | - |
| CS058_RS25195 () | 5278035..5278202 | + | 168 | WP_128729268.1 | CrpP family protein | - |
| CS058_RS25200 () | 5278268..5278486 | - | 219 | WP_033993321.1 | hypothetical protein | - |
| CS058_RS25205 () | 5278500..5278697 | - | 198 | WP_003123325.1 | hypothetical protein | - |
| CS058_RS25210 () | 5278713..5279123 | - | 411 | WP_033993319.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| CS058_RS25215 () | 5279123..5279353 | - | 231 | WP_023132185.1 | antitoxin | Antitoxin Detail |
| CS058_RS25220 () | 5279609..5281528 | + | 1920 | WP_058149575.1 | type I DNA topoisomerase | - |
| CS058_RS25225 () | 5281835..5282044 | + | 210 | WP_003105733.1 | cold-shock protein | - |
| CS058_RS25230 () | 5282266..5284155 | + | 1890 | WP_016851610.1 | hypothetical protein | - |
| CS058_RS25235 () | 5284152..5286128 | + | 1977 | WP_016851611.1 | DEAD/DEAH box helicase | - |
| CS058_RS25240 () | 5286356..5287275 | + | 920 | Protein_4891 | IS3 family transposase IS222 | Transposase |
| CS058_RS25245 () | 5287302..5288678 | + | 1377 | WP_099887691.1 | IS30 family transposase ISPa37 | Transposase |
| CS058_RS25250 () | 5288683..5288973 | + | 291 | Protein_4893 | IS3 family transposase IS222 | Transposase |
| CS058_RS25255 () | 5289023..5289307 | + | 285 | WP_192875560.1 | hypothetical protein | - |
| CS058_RS25260 () | 5289378..5289668 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| CS058_RS25265 () | 5289665..5289964 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CS058_RS25270 () | 5290166..5291290 | + | 1125 | WP_034024019.1 | hypothetical protein | VF |
| CS058_RS25275 () | 5291290..5292999 | + | 1710 | WP_003123331.1 | Outer membrane lipoprotein BfpB | VF |
| CS058_RS25280 () | 5293003..5294328 | + | 1326 | WP_042180214.1 | type 4b pilus protein PilO2 | - |
| CS058_RS25285 () | 5294318..5294851 | + | 534 | WP_023094340.1 | type IV pilus biogenesis protein PilP | - |
| CS058_RS25290 () | 5294860..5296440 | + | 1581 | WP_023101572.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| CS058_RS25295 () | 5296440..5297519 | + | 1080 | WP_003123335.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| CS058_RS25300 () | 5297541..5298071 | + | 531 | WP_003099765.1 | hypothetical protein | VF |
| CS058_RS25305 () | 5298068..5299009 | + | 942 | WP_004352826.1 | Flp pilus assembly complex ATPase component TadA | - |
| CS058_RS25310 () | 5299014..5300342 | + | 1329 | WP_004352824.1 | hypothetical protein | VF |
| CS058_RS25315 () | 5300371..5300808 | + | 438 | WP_015503584.1 | hypothetical protein | VF |
| CS058_RS32150 () | 5301874..5302119 | + | 246 | WP_003123340.1 | hypothetical protein | - |
| CS058_RS32155 () | 5302194..5302370 | + | 177 | WP_015503587.1 | hypothetical protein | - |
| CS058_RS25330 () | 5302831..5303310 | + | 480 | WP_003117056.1 | DUF3577 domain-containing protein | - |
| CS058_RS32160 () | 5303448..5303606 | + | 159 | WP_003109368.1 | hypothetical protein | - |
| CS058_RS25335 () | 5303680..5303877 | + | 198 | WP_015503588.1 | hypothetical protein | - |
| CS058_RS25345 () | 5304362..5305069 | + | 708 | WP_042180221.1 | hypothetical protein | - |
| CS058_RS25350 () | 5305305..5305655 | + | 351 | WP_004347949.1 | hypothetical protein | - |
| CS058_RS25355 () | 5305712..5306503 | + | 792 | WP_003123344.1 | DUF3275 family protein | - |
| CS058_RS25360 () | 5306606..5306968 | + | 363 | WP_003117061.1 | hypothetical protein | - |
| CS058_RS25365 () | 5307036..5307290 | + | 255 | WP_003117062.1 | hypothetical protein | - |
| CS058_RS25370 () | 5307383..5307988 | + | 606 | WP_003125296.1 | hypothetical protein | - |
| CS058_RS25375 () | 5308018..5309463 | + | 1446 | WP_042180224.1 | class I SAM-dependent methyltransferase | - |
| CS058_RS25380 () | 5309568..5311817 | + | 2250 | WP_088136114.1 | DEAD/DEAH box helicase | - |
| CS058_RS25385 () | 5312141..5313367 | + | 1227 | WP_071537237.1 | hypothetical protein | - |
| CS058_RS25390 () | 5313583..5313743 | + | 161 | Protein_4921 | Hin recombinase | - |
| CS058_RS25395 () | 5313807..5314481 | - | 675 | WP_071537241.1 | hypothetical protein | - |
| CS058_RS25400 () | 5314564..5315229 | - | 666 | WP_034014158.1 | DUF3218 family protein | - |
| CS058_RS25405 () | 5315240..5316271 | - | 1032 | WP_031643855.1 | hypothetical protein | - |
| CS058_RS25410 () | 5316882..5317574 | + | 693 | WP_058174470.1 | hypothetical protein | - |
| CS058_RS25415 () | 5317585..5318340 | + | 756 | WP_003099814.1 | TIGR03759 family integrating conjugative element protein | - |
| CS058_RS25420 () | 5318325..5318906 | + | 582 | WP_034014161.1 | hypothetical protein | VF |
| CS058_RS25425 () | 5318903..5319403 | + | 501 | WP_034014162.1 | integrating conjugative element protein | - |
| CS058_RS25430 () | 5319412..5319681 | + | 270 | WP_034014163.1 | hypothetical protein | - |
| CS058_RS25435 () | 5319685..5321916 | + | 2232 | WP_023911849.1 | type IV conjugative transfer system coupling protein TraD | - |
| CS058_RS25440 () | 5321916..5322662 | + | 747 | WP_003099824.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| CS058_RS25445 () | 5322680..5323171 | + | 492 | WP_003099826.1 | hypothetical protein | - |
| CS058_RS25450 () | 5323413..5324894 | + | 1482 | WP_099887696.1 | UvrD-helicase domain-containing protein | - |
| CS058_RS31895 () | 5325026..5326135 | + | 1110 | WP_023083225.1 | hypothetical protein | - |
| CS058_RS25460 () | 5326180..5326491 | - | 312 | WP_003117074.1 | DUF2845 domain-containing protein | - |
| CS058_RS25465 () | 5326664..5326963 | + | 300 | WP_023083774.1 | hypothetical protein | - |
| CS058_RS25470 () | 5327056..5327394 | + | 339 | WP_031756003.1 | RAQPRD family integrative conjugative element protein | - |
| CS058_RS25475 () | 5327391..5327630 | + | 240 | WP_003123360.1 | TIGR03758 family integrating conjugative element protein | - |
| CS058_RS25480 () | 5327648..5328004 | + | 357 | WP_023083777.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| CS058_RS25485 () | 5328015..5328401 | + | 387 | WP_017001410.1 | TIGR03750 family conjugal transfer protein | - |
| CS058_RS25490 () | 5328398..5329057 | + | 660 | WP_023083778.1 | TIGR03746 family integrating conjugative element protein | - |
| CS058_RS25495 () | 5329054..5329938 | + | 885 | WP_023083779.1 | TIGR03749 family integrating conjugative element protein | - |
| CS058_RS25500 () | 5329922..5331427 | + | 1506 | WP_044265612.1 | TIGR03752 family integrating conjugative element protein | - |
| CS058_RS25505 () | 5331405..5331848 | + | 444 | WP_003121022.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| CS058_RS25510 () | 5331848..5334790 | + | 2943 | WP_042911416.1 | conjugative transfer ATPase | - |
| CS058_RS25515 () | 5334787..5335071 | + | 285 | WP_003099860.1 | hypothetical protein | - |
| CS058_RS25520 () | 5335068..5335727 | + | 660 | WP_099887698.1 | DsbA family protein | - |
| CS058_RS25525 () | 5335724..5335942 | - | 219 | WP_023082680.1 | hypothetical protein | - |
| CS058_RS25530 () | 5336151..5336582 | + | 432 | WP_023518409.1 | TIGR03757 family integrating conjugative element protein | - |
| CS058_RS25535 () | 5336582..5337520 | + | 939 | WP_009875853.1 | TIGR03756 family integrating conjugative element protein | - |
| CS058_RS25540 () | 5337538..5338920 | + | 1383 | WP_099887700.1 | integrating conjugative element protein | - |
| CS058_RS25545 () | 5338920..5339267 | + | 348 | WP_012076881.1 | hypothetical protein | - |
| CS058_RS25550 () | 5339264..5340778 | + | 1515 | WP_099887702.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| CS058_RS31900 () | 5340804..5341127 | - | 324 | WP_161496638.1 | hypothetical protein | - |
| CS058_RS25555 () | 5341246..5341518 | + | 273 | WP_023104746.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CS058_RS25560 () | 5341522..5341881 | + | 360 | WP_099887704.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CS058_RS25565 () | 5341891..5342808 | - | 918 | WP_023082681.1 | hypothetical protein | - |
| CS058_RS25570 () | 5342834..5343073 | - | 240 | WP_023082682.1 | hypothetical protein | - |
| CS058_RS25575 () | 5343457..5344707 | + | 1251 | WP_003119430.1 | IS256 family transposase ISRso7 | Transposase |
| CS058_RS25580 () | 5344867..5346789 | + | 1923 | WP_022580137.1 | helicase/relaxase domain-containing protein | - |
| CS058_RS25585 () | 5346786..5348087 | + | 1302 | WP_003454526.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CS058_RS25605 () | 5348906..5351470 | - | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| CS058_RS25610 () | 5351626..5352354 | - | 729 | WP_031756966.1 | peptidoglycan editing factor PgeF | - |
| CS058_RS25615 () | 5352351..5353313 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|