MGE detailed information
MGE type: Conjugative plasmid MGE length: 82833 bp
Accession: NZ_CP024475 Location: 1..82833 Organism: Shigella flexneri 7b strain 94-3007 Replicon: plasmid unnamed2
Accession: NZ_CP024475 Location: 1..82833 Organism: Shigella flexneri 7b strain 94-3007 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ98_RS23650 (315) | 315..1625 | + | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| CPZ98_RS23655 (1654) | 1654..1752 | + | 99 | Protein_2 | IS1 family transposase | - |
| CPZ98_RS23660 (1902) | 1902..2762 | - | 861 | WP_021526512.1 | Beta-lactamase TEM | ARG |
| CPZ98_RS23665 (2945) | 2945..3376 | - | 432 | Protein_4 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CPZ98_RS23670 (3442) | 3442..4146 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CPZ98_RS23675 (4345) | 4345..4695 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| CPZ98_RS23685 (4898) | 4898..5911 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| CPZ98_RS23690 (6069) | 6069..6542 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| CPZ98_RS23695 (6673) | 6673..7461 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CPZ98_RS23700 (7667) | 7667..8014 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CPZ98_RS23705 (8008) | 8008..8847 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CPZ98_RS23715 (8975) | 8975..9178 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| CPZ98_RS23720 (9334) | 9334..10539 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| CPZ98_RS23725 (10550) | 10550..10855 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| CPZ98_RS26100 (10899) | 10899..10964 | + | 66 | Protein_15 | EAL domain-containing protein | - |
| CPZ98_RS23735 (11082) | 11082..11846 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| CPZ98_RS23750 (12339) | 12339..12923 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| CPZ98_RS23755 (12923) | 12923..14161 | - | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| CPZ98_RS23760 (14158) | 14158..15063 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CPZ98_RS23770 (15185) | 15185..15889 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CPZ98_RS23775 (16024) | 16024..16119 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| CPZ98_RS23780 (16245) | 16245..16982 | + | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| CPZ98_RS23790 (17745) | 17745..18442 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| CPZ98_RS23805 (19891) | 19891..20125 | + | 235 | Protein_24 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CPZ98_RS23810 (20253) | 20253..20534 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| CPZ98_RS23815 (20657) | 20657..21007 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| CPZ98_RS23820 (21010) | 21010..21972 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| CPZ98_RS23825 (22119) | 22119..22412 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| CPZ98_RS23835 (22489) | 22489..23172 | + | 684 | WP_000085883.1 | DNA methylase | - |
| CPZ98_RS23840 (23173) | 23173..23394 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| CPZ98_RS23845 (23408) | 23408..23842 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| CPZ98_RS26110 (23893) | 23893..24669 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| CPZ98_RS23860 (25087) | 25087..25512 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| CPZ98_RS23865 (25559) | 25559..25981 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| CPZ98_RS23870 (25978) | 25978..26169 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| CPZ98_RS23880 (27207) | 27207..27437 | + | 231 | WP_000218647.1 | hypothetical protein | - |
| CPZ98_RS23885 (27489) | 27489..28850 | + | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| CPZ98_RS23890 (28897) | 28897..29460 | + | 564 | WP_016240496.1 | class I SAM-dependent methyltransferase | - |
| CPZ98_RS26680 (29546) | 29546..29989 | - | 444 | Protein_39 | hypothetical protein | - |
| CPZ98_RS23905 (30940) | 30940..32841 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| CPZ98_RS23910 (32991) | 32991..33470 | + | 480 | WP_130862260.1 | single-stranded DNA-binding protein | - |
| CPZ98_RS23915 (33526) | 33526..33759 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| CPZ98_RS23920 (33823) | 33823..35781 | + | 1959 | WP_112324844.1 | ParB/RepB/Spo0J family partition protein | - |
| CPZ98_RS23925 (35836) | 35836..36270 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| CPZ98_RS23930 (36267) | 36267..37029 | + | 763 | Protein_45 | plasmid SOS inhibition protein A | - |
| CPZ98_RS23935 (37007) | 37007..37186 | - | 180 | WP_001334662.1 | hypothetical protein | - |
| - (36998) | 36998..37222 | + | 225 | NuclAT_0 | - | - |
| - (36998) | 36998..37222 | + | 225 | NuclAT_0 | - | - |
| - (36998) | 36998..37222 | + | 225 | NuclAT_0 | - | - |
| - (36998) | 36998..37222 | + | 225 | NuclAT_0 | - | - |
| CPZ98_RS26685 (37208) | 37208..37357 | + | 150 | Protein_47 | plasmid maintenance protein Mok | - |
| CPZ98_RS23940 (37299) | 37299..37424 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CPZ98_RS23945 (37743) | 37743..38039 | - | 297 | Protein_49 | hypothetical protein | - |
| CPZ98_RS23955 (38339) | 38339..38635 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| CPZ98_RS23960 (38746) | 38746..39567 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| CPZ98_RS23965 (39864) | 39864..40454 | - | 591 | WP_000252683.1 | hypothetical protein | VF |
| CPZ98_RS23970 (40787) | 40787..41170 | + | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| CPZ98_RS23975 (41362) | 41362..42009 | + | 648 | WP_128867105.1 | transcriptional regulator TraJ family protein | - |
| CPZ98_RS23980 (42129) | 42129..42356 | + | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| CPZ98_RS23985 (42390) | 42390..42749 | + | 360 | WP_001098994.1 | type IV conjugative transfer system pilin TraA | - |
| CPZ98_RS23990 (42764) | 42764..43075 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| CPZ98_RS23995 (43097) | 43097..43663 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| CPZ98_RS24000 (43650) | 43650..44378 | + | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| CPZ98_RS24005 (44378) | 44378..45805 | + | 1428 | WP_134797202.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| CPZ98_RS24010 (45795) | 45795..46385 | + | 591 | WP_000002784.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| CPZ98_RS24015 (46372) | 46372..46692 | + | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| CPZ98_RS24020 (46689) | 46689..47204 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CPZ98_RS24025 (47339) | 47339..47560 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| CPZ98_RS24030 (47553) | 47553..47966 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| CPZ98_RS24035 (47959) | 47959..48432 | + | 474 | WP_033807958.1 | hypothetical protein | - |
| CPZ98_RS24040 (48531) | 48531..48749 | + | 219 | WP_033807959.1 | hypothetical protein | - |
| CPZ98_RS24045 (48777) | 48777..49124 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| CPZ98_RS24050 (49250) | 49250..51880 | + | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| CPZ98_RS24055 (51877) | 51877..52263 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| CPZ98_RS24060 (52260) | 52260..52892 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| CPZ98_RS24065 (52889) | 52889..53881 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| CPZ98_RS24070 (53911) | 53911..54216 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| CPZ98_RS24075 (54225) | 54225..54863 | + | 639 | WP_033807960.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CPZ98_RS24080 (54860) | 54860..55240 | + | 381 | WP_001462111.1 | hypothetical protein | - |
| CPZ98_RS24085 (55476) | 55476..57380 | + | 1905 | WP_225620370.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CPZ98_RS24090 (57407) | 57407..57664 | + | 258 | WP_033807961.1 | conjugal transfer protein TrbE | - |
| CPZ98_RS24095 (57657) | 57657..58400 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CPZ98_RS24100 (58414) | 58414..58755 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| CPZ98_RS24105 (58736) | 58736..59071 | - | 336 | WP_001620807.1 | hypothetical protein | - |
| CPZ98_RS24110 (59152) | 59152..59436 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CPZ98_RS24115 (59423) | 59423..59968 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CPZ98_RS24120 (59898) | 59898..60245 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| CPZ98_RS24125 (60226) | 60226..60618 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| CPZ98_RS24130 (60605) | 60605..61978 | + | 1374 | WP_033807962.1 | conjugal transfer pilus assembly protein TraH | - |
| CPZ98_RS24135 (61975) | 61975..64800 | + | 2826 | WP_033807963.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| CPZ98_RS24140 (64797) | 64797..65306 | + | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| CPZ98_RS24145 (65320) | 65320..66051 | + | 732 | WP_012881123.1 | conjugal transfer complement resistance protein TraT | - |
| CPZ98_RS24150 (66254) | 66254..66991 | + | 738 | WP_012881122.1 | hypothetical protein | - |
| CPZ98_RS24155 (67042) | 67042..69276 | + | 2235 | WP_125093769.1 | type IV conjugative transfer system coupling protein TraD | - |
| CPZ98_RS24160 (69276) | 69276..74546 | + | 5271 | WP_033807965.1 | Multifunctional conjugation protein TraI | Relaxase |
| CPZ98_RS24165 (74566) | 74566..75312 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| CPZ98_RS24170 (75367) | 75367..75927 | + | 561 | WP_033807966.1 | fertility inhibition protein FinO | - |
| CPZ98_RS24175 (76059) | 76059..76271 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| CPZ98_RS24180 (76517) | 76517..76978 | + | 462 | WP_001233850.1 | thermonuclease family protein | - |
| CPZ98_RS24185 (77024) | 77024..77233 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| CPZ98_RS24190 (77271) | 77271..77861 | + | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| CPZ98_RS24195 (78016) | 78016..78489 | + | 474 | WP_016240489.1 | hypothetical protein | - |
| - (78632) | 78632..78691 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (78632) | 78632..78691 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (78632) | 78632..78691 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (78632) | 78632..78691 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| CPZ98_RS24205 (78736) | 78736..78885 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| CPZ98_RS24210 (79170) | 79170..79418 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| CPZ98_RS24220 (79663) | 79663..79737 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CPZ98_RS24225 (79730) | 79730..80587 | + | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| CPZ98_RS24235 (81526) | 81526..82179 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CPZ98_RS24240 (82272) | 82272..82529 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|