MGE detailed information
MGE type: Conjugative plasmid MGE length: 84894 bp
Accession: NZ_CP024281 Location: 1..84894 Organism: Escherichia coli strain ATCC 43896 Replicon: plasmid unnamed3
Accession: NZ_CP024281 Location: 1..84894 Organism: Escherichia coli strain ATCC 43896 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS031_RS26995 () | 552..809 | + | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| CS031_RS27000 () | 802..1545 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CS031_RS27005 () | 1561..1899 | + | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| CS031_RS27010 () | 2026..2310 | + | 285 | WP_001448202.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CS031_RS27015 () | 2297..2842 | + | 546 | WP_000059824.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CS031_RS27020 () | 2772..3113 | + | 342 | WP_001448115.1 | P-type conjugative transfer protein TrbJ | - |
| CS031_RS27025 () | 3061..3486 | + | 426 | WP_001448114.1 | F-type conjugal transfer protein TrbF | - |
| CS031_RS27030 () | 3473..4845 | + | 1373 | Protein_8 | conjugal transfer protein TraH | - |
| CS031_RS27035 () | 4842..7661 | + | 2820 | WP_001007057.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CS031_RS27040 () | 7680..8177 | + | 498 | WP_000605861.1 | hypothetical protein | - |
| CS031_RS27045 () | 8209..8940 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| CS031_RS27055 () | 9212..9889 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| CS031_RS27060 () | 9889..10236 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| CS031_RS27065 () | 10256..11827 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| CS031_RS27070 () | 11900..14080 | + | 2181 | WP_031943252.1 | type IV conjugative transfer system coupling protein TraD | - |
| CS031_RS27075 () | 14080..19350 | + | 5271 | WP_000986934.1 | Multifunctional conjugation protein TraI | Relaxase |
| CS031_RS27080 () | 19370..20116 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| CS031_RS27085 () | 20175..21035 | + | 861 | WP_000704528.1 | putative protein YcjY | VF |
| CS031_RS27090 () | 21138..21698 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| CS031_RS27095 () | 21827..22039 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| CS031_RS27100 () | 22284..22745 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| CS031_RS27105 () | 22791..23000 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| CS031_RS27110 () | 23038..23628 | + | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| CS031_RS27115 () | 23868..24128 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| CS031_RS27125 () | 24353..24427 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CS031_RS27130 () | 24420..25277 | + | 858 | WP_000130647.1 | incFII family plasmid replication initiator RepA | - |
| CS031_RS27140 () | 26216..26869 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CS031_RS27950 () | 26962..27219 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CS031_RS27145 () | 27152..27553 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CS031_RS27150 () | 27838..28794 | + | 957 | Protein_30 | DUF262 domain-containing protein | - |
| CS031_RS27160 () | 28902..29228 | + | 327 | Protein_31 | IS4 family transposase | - |
| CS031_RS27165 () | 29262..32261 | - | 3000 | WP_096974573.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CS031_RS27170 () | 32291..32995 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CS031_RS27955 () | 33205..33555 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| CS031_RS27180 () | 33758..34771 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| CS031_RS27185 () | 34920..35711 | + | 792 | WP_001206316.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CS031_RS27190 () | 35875..36222 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CS031_RS27195 () | 36216..37055 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CS031_RS27205 () | 37183..37683 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| CS031_RS27210 () | 37859..38641 | - | 783 | WP_001163403.1 | IS21 family transposase IS1326 | Transposase |
| CS031_RS27215 () | 38631..40154 | - | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| CS031_RS27220 () | 40277..41821 | + | 1545 | WP_000287615.1 | IS3 family transposase IS1353 | Transposase |
| CS031_RS27225 () | 41872..42732 | - | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| CS031_RS27230 () | 42735..44414 | - | 1680 | WP_000179844.1 | DDE-type integrase/transposase/recombinase | - |
| CS031_RS27240 () | 44489..45157 | - | 669 | WP_001300294.1 | putative signaling protein | VF |
| CS031_RS27245 () | 45193..45429 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| CS031_RS27250 () | 45426..45788 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| CS031_RS27255 () | 45806..47500 | - | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| CS031_RS27260 () | 47552..47974 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| CS031_RS27265 () | 48010..48285 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| CS031_RS27270 () | 48299..48649 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| CS031_RS27275 () | 48721..49155 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| CS031_RS27280 () | 49262..49959 | - | 698 | Protein_53 | IS1 family transposase IS1R | Transposase |
| CS031_RS27285 () | 49988..50350 | - | 363 | Protein_54 | DUF262 domain-containing protein | - |
| CS031_RS27290 () | 50458..50910 | + | 453 | Protein_55 | IS4 family transposase IS10R | Transposase |
| CS031_RS27295 () | 50963..51667 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CS031_RS27305 () | 52527..52761 | + | 235 | Protein_57 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CS031_RS27310 () | 52889..53170 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| CS031_RS27315 () | 53293..53643 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| CS031_RS27320 () | 53646..54608 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| CS031_RS27325 () | 54755..55048 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| CS031_RS27335 () | 55125..55808 | + | 684 | WP_000085883.1 | DNA methylase | - |
| CS031_RS27340 () | 55809..56030 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| CS031_RS27345 () | 56044..56478 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| CS031_RS28160 () | 56529..57305 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| CS031_RS27360 () | 57846..58148 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| CS031_RS27365 () | 58195..58617 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| CS031_RS27370 () | 58614..58805 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| CS031_RS27390 () | 59843..60073 | + | 231 | WP_000218647.1 | hypothetical protein | - |
| CS031_RS27395 () | 60125..61486 | + | 1362 | WP_000170713.1 | DUF3560 domain-containing protein | - |
| CS031_RS27400 () | 61533..62096 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| CS031_RS28165 () | 62248..62502 | + | 255 | WP_072254791.1 | hypothetical protein | - |
| CS031_RS27435 () | 62972..63499 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| CS031_RS27440 () | 63555..63788 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| CS031_RS27445 () | 63847..65805 | + | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| CS031_RS27450 () | 65860..66294 | + | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| CS031_RS27455 () | 66291..67010 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| CS031_RS27960 () | 67022..67210 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 67022..67246 | + | 225 | NuclAT_0 | - | - |
| - () | 67022..67246 | + | 225 | NuclAT_0 | - | - |
| - () | 67022..67246 | + | 225 | NuclAT_0 | - | - |
| - () | 67022..67246 | + | 225 | NuclAT_0 | - | - |
| - () | 67179..67244 | + | 66 | - | - | Antitoxin Detail |
| CS031_RS27460 () | 67290..67448 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CS031_RS27485 () | 68367..68654 | + | 288 | WP_000107537.1 | hypothetical protein | - |
| CS031_RS27490 () | 68774..69595 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CS031_RS27495 () | 69892..70539 | - | 648 | WP_000614282.1 | hypothetical protein | VF |
| CS031_RS27500 () | 70825..71208 | + | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| CS031_RS27505 () | 71402..72088 | + | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| CS031_RS27510 () | 72182..72409 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CS031_RS27515 () | 72443..72805 | + | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| CS031_RS27520 () | 72810..73121 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CS031_RS27525 () | 73143..73709 | + | 567 | WP_000399804.1 | type IV conjugative transfer system protein TraE | - |
| CS031_RS27530 () | 73720..74424 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| CS031_RS27535 () | 74424..75851 | + | 1428 | WP_000146638.1 | conjugal transfer protein TraB | - |
| CS031_RS27540 () | 75841..76425 | + | 585 | WP_000002795.1 | conjugal transfer protein TraP | - |
| CS031_RS27545 () | 76379..76732 | + | 354 | WP_071528018.1 | conjugal transfer protein TrbD | - |
| CS031_RS27550 () | 76725..76976 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| CS031_RS27555 () | 76973..77488 | + | 516 | WP_000809893.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CS031_RS27560 () | 77623..77844 | + | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| CS031_RS27565 () | 78004..80631 | + | 2628 | WP_032171834.1 | type IV secretion system protein TraC | - |
| CS031_RS27570 () | 80628..81014 | + | 387 | WP_032171831.1 | type-F conjugative transfer system protein TrbI | - |
| CS031_RS27575 () | 81011..81643 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| CS031_RS27580 () | 81640..82632 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| CS031_RS27585 () | 82662..82967 | + | 306 | WP_000224411.1 | hypothetical protein | - |
| CS031_RS27590 () | 82976..83614 | + | 639 | WP_001080257.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|