MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 150389 bp
Accession: NZ_CP024265 Location: 1..150389 Organism: Escherichia coli O169:H41 strain F6326-C1 Replicon: plasmid unnamed2
Accession: NZ_CP024265 Location: 1..150389 Organism: Escherichia coli O169:H41 strain F6326-C1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG38_RS25675 () | 483..1313 | - | 831 | WP_001595073.1 | K88 fimbrial protein AC | VF |
| COG38_RS25680 () | 1462..1761 | - | 300 | WP_032201317.1 | Major pilu subunit operon regulatory protein PapB | VF |
| COG38_RS25685 () | 1899..2642 | - | 744 | WP_001595074.1 | hypothetical protein | - |
| COG38_RS25690 () | 2653..3417 | - | 765 | WP_001595075.1 | hypothetical protein | VF |
| COG38_RS25695 () | 3434..4201 | - | 768 | WP_024171421.1 | hypothetical protein | VF |
| COG38_RS25700 () | 4346..4849 | - | 504 | WP_001595078.1 | hypothetical protein | VF |
| COG38_RS25705 () | 4891..5574 | - | 684 | WP_050437387.1 | Chaperone protein FaeE | VF |
| COG38_RS25710 () | 5618..8017 | - | 2400 | WP_023486680.1 | Outer membrane usher protein YraJ | VF |
| COG38_RS25715 () | 8027..8545 | - | 519 | WP_001595081.1 | hypothetical protein | VF |
| COG38_RS25720 () | 8638..8913 | - | 276 | WP_001595082.1 | Major pilu subunit operon regulatory protein PapB | VF |
| COG38_RS27045 () | 9396..9497 | + | 102 | Protein_11 | transposase | - |
| COG38_RS25735 () | 9976..10341 | - | 366 | Protein_12 | IS1 family transposase IS1N | Transposase |
| COG38_RS25745 () | 10495..11646 | + | 1152 | WP_001702847.1 | IS30 family transposase IS30D | Transposase |
| COG38_RS25750 () | 11678..13199 | - | 1522 | Protein_14 | IS3 family transposase | - |
| COG38_RS25760 () | 14856..15173 | - | 318 | Protein_15 | ISL3 family transposase ISEc38 | Transposase |
| COG38_RS25765 () | 15234..15410 | - | 177 | Protein_16 | IS21 family transposase IS21 | Transposase |
| COG38_RS25770 () | 15527..15739 | + | 213 | WP_001717486.1 | hypothetical protein | - |
| COG38_RS25780 () | 16273..17034 | + | 762 | WP_179149066.1 | proQ/FINO family protein | - |
| COG38_RS25785 () | 17255..17620 | + | 366 | Protein_19 | transposase | - |
| COG38_RS25790 () | 17614..17835 | + | 222 | Protein_20 | IS91 family transposase | - |
| COG38_RS25795 () | 18194..19018 | - | 825 | WP_001595093.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| COG38_RS25800 () | 19024..20088 | - | 1065 | WP_001595094.1 | hypothetical protein | - |
| COG38_RS25805 () | 20103..21128 | - | 1026 | WP_001595096.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| COG38_RS25810 () | 21115..22446 | - | 1332 | WP_024171392.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| COG38_RS25815 () | 22644..23132 | - | 489 | WP_001595098.1 | hypothetical protein | - |
| COG38_RS25820 () | 23120..23947 | - | 828 | WP_001595099.1 | hypothetical protein | - |
| COG38_RS25825 () | 23949..24509 | - | 561 | WP_001595100.1 | hypothetical protein | - |
| COG38_RS25830 () | 24512..25969 | - | 1458 | WP_001717441.1 | type II/III secretion system protein | - |
| COG38_RS25835 () | 25986..26405 | - | 420 | WP_024171393.1 | hypothetical protein | VF |
| COG38_RS25840 () | 26424..27992 | - | 1569 | WP_024171394.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| COG38_RS25845 () | 28053..28763 | - | 711 | WP_149007421.1 | Toxin coregulated pilin | VF |
| COG38_RS25850 () | 29067..29510 | - | 444 | WP_001595106.1 | hypothetical protein | VF |
| COG38_RS25855 () | 29518..30360 | - | 843 | WP_001595107.1 | helix-turn-helix domain-containing protein | - |
| COG38_RS25860 () | 30635..30934 | - | 300 | WP_024171395.1 | Major pilu subunit operon regulatory protein PapB | VF |
| COG38_RS25865 () | 31423..31551 | + | 129 | Protein_35 | transcriptional regulator | - |
| COG38_RS25870 () | 31672..32412 | + | 741 | WP_001717448.1 | IS91 family transposase ISMno23 | Transposase |
| COG38_RS25875 () | 32502..34023 | + | 1522 | Protein_37 | IS3 family transposase | - |
| COG38_RS25880 () | 34381..35358 | - | 978 | WP_023486339.1 | RepB family plasmid replication initiator protein | - |
| COG38_RS25890 () | 35986..37521 | + | 1536 | WP_000447015.1 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS25895 () | 37538..38293 | + | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS25915 () | 38875..40052 | - | 1178 | Protein_41 | IS91 family transposase ISEc37 | Transposase |
| COG38_RS25920 () | 40052..40348 | - | 297 | WP_000766063.1 | hypothetical protein | - |
| COG38_RS25925 () | 40452..40778 | - | 327 | WP_001595119.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| COG38_RS25930 () | 40775..41026 | - | 252 | WP_001595120.1 | hypothetical protein | Antitoxin Detail |
| COG38_RS25935 () | 41580..42446 | + | 867 | WP_001595122.1 | AAA family ATPase | - |
| COG38_RS25940 () | 42446..43477 | + | 1032 | WP_001595123.1 | ParB/RepB/Spo0J family partition protein | - |
| COG38_RS25945 () | 43501..43914 | + | 414 | WP_032159708.1 | hypothetical protein | - |
| COG38_RS27240 () | 43911..44234 | + | 324 | WP_000143877.1 | hypothetical protein | - |
| COG38_RS25955 () | 44273..45547 | - | 1275 | WP_001595125.1 | Y-family DNA polymerase | - |
| COG38_RS25960 () | 45547..45969 | - | 423 | WP_001595126.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| COG38_RS25965 () | 46272..47225 | + | 954 | Protein_51 | ISL3 family transposase ISEc38 | Transposase |
| COG38_RS25970 () | 47230..47637 | - | 408 | Protein_52 | ISL3 family transposase ISEc38 | Transposase |
| COG38_RS25975 () | 47687..48034 | - | 348 | WP_001595131.1 | IS66 family transposase ISEc8 | Transposase |
| COG38_RS27245 () | 48031..48411 | - | 381 | WP_001171540.1 | IS66 family transposase ISEc8 | Transposase |
| COG38_RS25985 () | 48505..48915 | + | 411 | Protein_55 | IS3 family transposase ISSfl10 | Transposase |
| COG38_RS25990 () | 48959..50071 | + | 1113 | WP_099490844.1 | IS4 family transposase IS421 | Transposase |
| COG38_RS25995 () | 50340..50615 | + | 276 | Protein_57 | incFII family plasmid replication initiator RepA | - |
| COG38_RS26000 () | 50647..50814 | + | 168 | Protein_58 | IS91 family transposase | - |
| COG38_RS26005 () | 51130..51327 | - | 198 | WP_001413878.1 | ANR family transcriptional regulator | - |
| COG38_RS26010 () | 51525..52322 | + | 798 | WP_001595134.1 | CFA/I fimbrial subunit D | VF |
| COG38_RS26015 () | 52690..52926 | - | 237 | Protein_61 | IS91 family transposase | - |
| COG38_RS26020 () | 52922..54442 | - | 1521 | Protein_62 | DUF4158 domain-containing protein | - |
| COG38_RS26025 () | 54572..55201 | - | 630 | WP_001717585.1 | hypothetical protein | - |
| COG38_RS26030 () | 55255..55924 | - | 670 | Protein_64 | AAA family ATPase | - |
| COG38_RS26035 () | 56194..56316 | + | 123 | Protein_65 | IS1 family transposase IS1N | Transposase |
| COG38_RS26040 () | 56596..57156 | + | 561 | WP_001595151.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| COG38_RS26045 () | 57159..60128 | + | 2970 | WP_001717584.1 | Tn3 family transposase TnpA_TnShfr1 | Transposase |
| COG38_RS26055 () | 60342..60638 | + | 297 | WP_000766063.1 | hypothetical protein | - |
| COG38_RS26060 () | 60638..61815 | + | 1178 | Protein_69 | IS91 family transposase ISEc37 | Transposase |
| COG38_RS26065 () | 62004..62566 | + | 563 | Protein_70 | IS1 family transposase | - |
| COG38_RS26070 () | 62580..63659 | - | 1080 | WP_096842321.1 | putative outer membrane usher protein LpfC' | VF |
| COG38_RS26075 () | 63628..65016 | - | 1389 | WP_099560778.1 | fimbrial biogenesis outer membrane usher protein | - |
| COG38_RS26080 () | 64973..65671 | - | 699 | WP_001595139.1 | Chaperone protein caf1M | VF |
| COG38_RS26085 () | 65720..66223 | - | 504 | WP_001595140.1 | CS6 fimbrial subunit CssB | - |
| COG38_RS26090 () | 66241..66705 | - | 465 | WP_024171410.1 | CS6 fimbrial subunit A | VF |
| COG38_RS26095 () | 66860..67084 | - | 225 | Protein_76 | IS66 family transposase ISEc43 | Transposase |
| COG38_RS27055 () | 67303..67476 | - | 174 | WP_001717498.1 | hypothetical protein | - |
| COG38_RS26105 () | 67844..68559 | - | 716 | Protein_78 | IS91 family transposase ISEc37 | Transposase |
| COG38_RS26110 () | 68602..68874 | - | 273 | WP_000566440.1 | hypothetical protein | - |
| COG38_RS26115 () | 68867..69445 | - | 579 | WP_001400936.1 | Tn3 family transposase ISPsy39 | Transposase |
| COG38_RS26120 () | 69595..72642 | + | 3048 | WP_001717496.1 | Tn3 family transposase ISPsy42 | Transposase |
| COG38_RS27060 () | 72651..72815 | - | 165 | Protein_82 | IS91 family transposase | - |
| COG38_RS27065 () | 72808..73020 | + | 213 | WP_148717951.1 | hypothetical protein | - |
| COG38_RS26130 () | 73431..74618 | + | 1188 | WP_024191434.1 | peptide antibiotic transporter SbmA | - |
| COG38_RS26135 () | 74915..76003 | - | 1089 | Protein_85 | IS3 family transposase | - |
| COG38_RS26140 () | 76184..76810 | - | 627 | WP_001595210.1 | ABC transporter ATP-binding protein | - |
| COG38_RS26145 () | 76803..77576 | - | 774 | WP_050437394.1 | hypothetical protein | - |
| COG38_RS26150 () | 77533..78735 | - | 1203 | WP_001595205.1 | TolC family protein | - |
| COG38_RS26155 () | 78732..79862 | - | 1131 | WP_001718764.1 | ABC transporter permease | - |
| COG38_RS26160 () | 80421..81067 | - | 647 | Protein_90 | IS630 family transposase | - |
| COG38_RS26165 () | 81068..81469 | + | 402 | Protein_91 | IS91 family transposase | - |
| COG38_RS26180 () | 82332..83189 | - | 858 | WP_001401515.1 | incFII family plasmid replication initiator RepA | - |
| COG38_RS26185 () | 83182..83256 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| COG38_RS26195 () | 83482..83742 | - | 261 | WP_000083817.1 | replication regulatory protein RepA | - |
| COG38_RS26200 () | 84026..84232 | - | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 84224..84280 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 84224..84280 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 84224..84280 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 84224..84280 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| COG38_RS26210 () | 84524..84706 | + | 183 | WP_001393357.1 | hypothetical protein | - |
| COG38_RS26215 () | 84930..85661 | - | 732 | WP_001717613.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| COG38_RS26220 () | 85658..86204 | - | 547 | Protein_98 | DUF2726 domain-containing protein | - |
| COG38_RS26225 () | 86222..89059 | - | 2838 | Protein_99 | Multifunctional conjugation protein TraI | Relaxase |
| COG38_RS26230 () | 89121..89381 | + | 261 | Protein_100 | IS3 family transposase ISSfl10 | Transposase |
| COG38_RS26235 () | 89446..90396 | + | 951 | Protein_101 | IS30 family transposase IS30D | Transposase |
| COG38_RS26240 () | 90497..91252 | - | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS26245 () | 91269..92804 | - | 1536 | WP_000447015.1 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS26250 () | 93018..93242 | + | 225 | Protein_104 | IS30 family transposase IS30D | Transposase |
| COG38_RS27250 () | 93323..93478 | + | 156 | WP_000074142.1 | hypothetical protein | - |
| COG38_RS26260 () | 93726..95318 | - | 1593 | WP_099490891.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26265 () | 95349..95699 | - | 351 | WP_000624718.1 | IS66 family transposase ISEc47 | Transposase |
| COG38_RS26270 () | 95696..96121 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26275 () | 96319..97329 | - | 1011 | Protein_109 | IS66 family transposase ISEc43 | Transposase |
| COG38_RS26280 () | 97384..98496 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| COG38_RS26285 () | 98667..99281 | - | 615 | Protein_111 | IS66 family transposase ISEc47 | Transposase |
| COG38_RS26290 () | 99312..99662 | - | 351 | WP_024171399.1 | IS66 family transposase ISEc47 | Transposase |
| COG38_RS26295 () | 99659..100093 | - | 435 | WP_001309734.1 | IS66 family transposase ISEc43 | Transposase |
| COG38_RS26300 () | 100108..100563 | - | 456 | WP_157757766.1 | IS3 family transposase ISEcB1 | Transposase |
| COG38_RS26305 () | 100623..101125 | - | 503 | Protein_115 | IS3 family transposase ISBope1 | Transposase |
| COG38_RS26310 () | 101249..101398 | - | 150 | Protein_116 | IS3 family transposase ISKpn37 | Transposase |
| COG38_RS26315 () | 101906..102124 | + | 219 | WP_001595189.1 | Heat-stable enterotoxin ST-IA/ST-P | VF |
| COG38_RS26325 () | 102418..102834 | + | 417 | Protein_118 | IS66 family transposase ISCro1 | Transposase |
| COG38_RS26335 () | 102944..103240 | - | 297 | Protein_119 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS26340 () | 103326..103751 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26345 () | 103748..104098 | + | 351 | WP_000624718.1 | IS66 family transposase ISEc47 | Transposase |
| COG38_RS26350 () | 104129..105721 | + | 1593 | WP_099490891.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26355 () | 105751..106513 | - | 763 | Protein_123 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS26360 () | 106698..107266 | - | 569 | Protein_124 | IS91 family transposase IS91 | Transposase |
| COG38_RS26365 () | 107266..107562 | - | 297 | WP_001717536.1 | hypothetical protein | - |
| COG38_RS26380 () | 108056..108412 | + | 357 | WP_071600075.1 | Protein CexE | VF |
| COG38_RS26390 () | 108686..109584 | + | 899 | Protein_127 | IS3 family transposase ISEc48 | Transposase |
| COG38_RS27255 () | 109586..110951 | + | 1366 | Protein_128 | IS66 family transposase ISCro1 | Transposase |
| COG38_RS26400 () | 111093..111758 | - | 666 | Protein_129 | IS66 family transposase ISEc43 | Transposase |
| COG38_RS26405 () | 111670..111900 | - | 231 | WP_099490941.1 | transposase | - |
| COG38_RS26410 () | 111989..112186 | - | 198 | Protein_131 | IS3 family transposase IS2 | Transposase |
| COG38_RS26415 () | 112438..113079 | + | 642 | WP_001719375.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| COG38_RS26420 () | 113129..113268 | + | 140 | Protein_133 | IS91 family transposase IS91 | Transposase |
| COG38_RS27260 () | 113464..113613 | - | 150 | WP_001424616.1 | hypothetical protein | - |
| COG38_RS26425 () | 113983..115227 | - | 1245 | WP_024171601.1 | hypothetical protein | - |
| COG38_RS26430 () | 115435..115927 | + | 493 | Protein_136 | IS3 family transposase IS1203 | Transposase |
| - () | 116026..116172 | - | 147 | NuclAT_0 | - | - |
| - () | 116026..116172 | - | 147 | NuclAT_0 | - | - |
| - () | 116026..116172 | - | 147 | NuclAT_0 | - | - |
| - () | 116026..116172 | - | 147 | NuclAT_0 | - | - |
| COG38_RS26435 () | 116129..116443 | - | 315 | WP_000872086.1 | hypothetical protein | - |
| COG38_RS26440 () | 116440..117114 | - | 675 | WP_001719371.1 | plasmid SOS inhibition protein A | - |
| COG38_RS26445 () | 117111..117545 | - | 435 | WP_001719370.1 | conjugation system SOS inhibitor PsiB | - |
| COG38_RS26450 () | 117600..119567 | - | 1968 | WP_032201451.1 | ParB/RepB/Spo0J family partition protein | - |
| COG38_RS26455 () | 119628..119861 | - | 234 | WP_001297827.1 | DUF905 domain-containing protein | - |
| COG38_RS26460 () | 119918..120439 | - | 522 | WP_032201449.1 | single-stranded DNA-binding protein | - |
| COG38_RS26485 () | 121298..121861 | - | 564 | WP_032201448.1 | class I SAM-dependent methyltransferase | - |
| COG38_RS26490 () | 121907..123268 | - | 1362 | WP_032201446.1 | DUF3560 domain-containing protein | - |
| COG38_RS26495 () | 123320..123550 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| COG38_RS27265 () | 124230..124462 | + | 233 | Protein_146 | hypothetical protein | - |
| COG38_RS26510 () | 124449..124625 | - | 177 | Protein_147 | antirestriction protein | - |
| COG38_RS26515 () | 124721..125146 | + | 426 | WP_000436083.1 | IS66 family transposase IS682 | Transposase |
| COG38_RS26520 () | 125143..125493 | + | 351 | WP_001404526.1 | IS66 family transposase ISEc47 | Transposase |
| COG38_RS26525 () | 125524..127137 | + | 1614 | WP_099492829.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26530 () | 127168..127731 | - | 564 | Protein_151 | hypothetical protein | - |
| COG38_RS26535 () | 127776..128210 | - | 435 | WP_001595158.1 | DUF1380 family protein | - |
| COG38_RS26540 () | 128242..129209 | - | 968 | Protein_153 | IS66 family transposase ISEc47 | Transposase |
| COG38_RS26545 () | 129240..129590 | - | 351 | WP_001464094.1 | IS66 family transposase IS682 | Transposase |
| COG38_RS26550 () | 129587..130006 | - | 420 | WP_001595160.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS27085 () | 130146..130898 | - | 753 | WP_001595161.1 | hypothetical protein | - |
| COG38_RS26560 () | 131040..133136 | - | 2097 | WP_001717881.1 | ATP-binding cassette domain-containing protein | - |
| COG38_RS26565 () | 133133..134344 | - | 1212 | WP_001717882.1 | biotin/lipoyl-binding protein | - |
| COG38_RS26570 () | 134492..134680 | - | 189 | WP_001595165.1 | hypothetical protein | - |
| COG38_RS26575 () | 135073..135192 | - | 120 | Protein_160 | IS200/IS605 family transposase | - |
| COG38_RS26580 () | 135238..135390 | - | 153 | Protein_161 | IS3 family transposase | - |
| COG38_RS26590 () | 135483..136238 | - | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| COG38_RS26595 () | 136255..136494 | - | 240 | Protein_163 | IS21 family transposase | - |
| COG38_RS26600 () | 136499..136711 | - | 213 | Protein_164 | helix-turn-helix domain-containing protein | - |
| COG38_RS26605 () | 136901..137761 | - | 861 | Protein_165 | IS91 family transposase ISSbo1 | Transposase |
| COG38_RS27090 () | 137800..137901 | - | 102 | Protein_166 | transposase domain-containing protein | - |
| COG38_RS26610 () | 137937..139146 | - | 1210 | Protein_167 | IS256 family transposase IS1414 | Transposase |
| COG38_RS26615 () | 139219..140046 | - | 828 | Protein_168 | IS66 family transposase ISEc8 | Transposase |
| COG38_RS26625 () | 140111..140893 | - | 783 | Protein_169 | IS21 family transposase IS100kyp | Transposase |
| COG38_RS26630 () | 140890..141201 | - | 312 | Protein_170 | IS21 family transposase IS100kyp | Transposase |
| COG38_RS26635 () | 141232..142845 | - | 1614 | WP_099492829.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26640 () | 142876..143226 | - | 351 | WP_000624720.1 | IS66 family transposase ISEc23 | Transposase |
| COG38_RS26645 () | 143223..143648 | - | 426 | WP_000436083.1 | IS66 family transposase IS682 | Transposase |
| COG38_RS26650 () | 143745..144695 | - | 951 | WP_023486370.1 | virulence factor VirK | - |
| COG38_RS26655 () | 144700..145788 | - | 1089 | WP_024171602.1 | putative hexosyltransferase CapU | - |
| COG38_RS26660 () | 145791..146633 | - | 843 | WP_160371899.1 | polysaccharide deacetylase family protein | - |
| COG38_RS26670 () | 146876..147418 | - | 543 | WP_032201505.1 | hypothetical protein | - |
| COG38_RS26675 () | 147418..147675 | - | 258 | WP_001595062.1 | hypothetical protein | - |
| COG38_RS26680 () | 148152..148565 | + | 414 | WP_001595064.1 | hypothetical protein | - |
| COG38_RS26685 () | 148660..148866 | + | 207 | Protein_180 | tyrosine-type recombinase/integrase | - |
| COG38_RS26690 () | 148915..149199 | + | 285 | Protein_181 | IS3 family transposase ISEcB1 | Transposase |
| COG38_RS26695 () | 149245..149688 | + | 444 | Protein_182 | IS1 family transposase IS1N | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|