MGE detailed information
MGE type: MGE length: 981 bp
Accession: NZ_CP024262 Location: 36452..37432 Organism: Escherichia coli strain F5656C1 Replicon: plasmid unnamed2
Accession: NZ_CP024262 Location: 36452..37432 Organism: Escherichia coli strain F5656C1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4V61_RS25320 () | 32149..32541 | - | 393 | WP_000138370.1 | F-type conjugal transfer protein TrbF | - |
| A4V61_RS25325 () | 32495..32869 | - | 375 | WP_071594518.1 | P-type conjugative transfer protein TrbJ | - |
| A4V61_RS25330 () | 32799..33128 | - | 330 | Protein_41 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| A4V61_RS25335 () | 33281..34009 | - | 729 | WP_001230775.1 | type-F conjugative transfer system secretin TraK | - |
| A4V61_RS25340 () | 33996..34562 | - | 567 | WP_000399782.1 | type IV conjugative transfer system protein TraE | - |
| A4V61_RS25345 () | 34584..34895 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| A4V61_RS25350 () | 34900..35262 | - | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| A4V61_RS25355 () | 35295..35522 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| A4V61_RS25360 () | 35659..36330 | - | 672 | WP_072328069.1 | conjugal transfer transcriptional regulator TraJ | - |
| A4V61_RS25370 () | 36452..37432 | - | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| A4V61_RS25380 () | 37723..38106 | - | 384 | WP_000124827.1 | relaxosome protein TraM | - |
| A4V61_RS25390 () | 38429..39031 | + | 603 | WP_013188482.1 | transglycosylase SLT domain-containing protein | - |
| A4V61_RS25395 () | 39327..40148 | - | 822 | WP_001393327.1 | DUF945 domain-containing protein | - |
| A4V61_RS25400 () | 40265..40552 | - | 288 | WP_000107522.1 | hypothetical protein | - |
| A4V61_RS25410 () | 40708..41010 | - | 303 | WP_001272235.1 | hypothetical protein | - |
| A4V61_RS26410 () | 41327..41687 | + | 361 | Protein_54 | hypothetical protein | - |
| A4V61_RS25430 () | 41925..42083 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 42148..42342 | - | 195 | NuclAT_0 | - | - |
| - () | 42148..42342 | - | 195 | NuclAT_0 | - | - |
| - () | 42148..42342 | - | 195 | NuclAT_0 | - | - |
| - () | 42148..42342 | - | 195 | NuclAT_0 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | IS/Tn | TA6348 | CP009789 | 3666255..3667235 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | IS/Tn | TA6364 | NC_000913 | 3652182..3653162 | 0.002 |