MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 123073 bp
Accession: NZ_CP024260 Location: 2473587..2596659 Organism: Escherichia coli strain F5656C1 Replicon: chromosome
Accession: NZ_CP024260 Location: 2473587..2596659 Organism: Escherichia coli strain F5656C1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4V61_RS13080 () | 2469208..2470287 | - | 1080 | WP_032328150.1 | hypothetical protein | - |
| A4V61_RS13085 () | 2470336..2471232 | - | 897 | WP_032328152.1 | WYL domain-containing protein | - |
| A4V61_RS13090 () | 2471656..2472393 | - | 738 | WP_024183703.1 | porin family protein | - |
| A4V61_RS13095 () | 2472572..2472802 | + | 231 | WP_072145249.1 | integrase | - |
| A4V61_RS13100 () | 2473008..2473880 | + | 873 | Protein_2374 | HNH endonuclease | - |
| A4V61_RS13105 () | 2474086..2475562 | + | 1477 | Protein_2375 | ISL3 family transposase | - |
| A4V61_RS13110 () | 2475794..2477329 | + | 1536 | WP_032328154.1 | IS21 family transposase ISSso4 | Transposase |
| A4V61_RS13115 () | 2477346..2478101 | + | 756 | WP_001282653.1 | IS21 family transposase ISSso4 | Transposase |
| A4V61_RS26090 () | 2478196..2478342 | + | 147 | Protein_2378 | transposase | - |
| A4V61_RS13125 () | 2479044..2480168 | + | 1125 | WP_021552170.1 | DNA cytosine methyltransferase | - |
| A4V61_RS13130 () | 2480125..2481627 | + | 1503 | WP_032252217.1 | hypothetical protein | - |
| A4V61_RS13140 () | 2482126..2482278 | + | 153 | Protein_2381 | ATP-dependent helicase | - |
| A4V61_RS13155 () | 2484051..2484695 | - | 645 | WP_032327954.1 | hypothetical protein | - |
| A4V61_RS13160 () | 2484695..2484985 | - | 291 | WP_032252234.1 | PerC family transcriptional regulator | - |
| A4V61_RS13165 () | 2485064..2485282 | - | 219 | Protein_2385 | ParB/RepB/Spo0J family partition protein | - |
| A4V61_RS13170 () | 2485768..2486445 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| A4V61_RS13175 () | 2486445..2486792 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| A4V61_RS13180 () | 2486812..2488383 | + | 1572 | WP_000381401.1 | IS66 family transposase ISCro1 | Transposase |
| A4V61_RS13185 () | 2488413..2490091 | - | 1679 | Protein_2389 | AAA family ATPase | - |
| A4V61_RS13190 () | 2490419..2490673 | - | 255 | WP_072327863.1 | hypothetical protein | - |
| A4V61_RS13195 () | 2490683..2491380 | - | 698 | Protein_2391 | IS1 family transposase IS1A | Transposase |
| A4V61_RS26095 () | 2491436..2491570 | - | 135 | Protein_2392 | hypothetical protein | - |
| A4V61_RS13210 () | 2491847..2493592 | - | 1746 | WP_032252209.1 | NERD domain-containing protein | - |
| A4V61_RS13215 () | 2493829..2495073 | - | 1245 | WP_032252208.1 | GIY-YIG nuclease family protein | - |
| A4V61_RS13220 () | 2495229..2495630 | - | 402 | WP_032252206.1 | hypothetical protein | - |
| A4V61_RS13230 () | 2495918..2496694 | - | 777 | Protein_2396 | hypothetical protein | VF |
| A4V61_RS13235 () | 2496710..2498254 | - | 1545 | WP_001559829.1 | hypothetical protein | VF |
| A4V61_RS13240 () | 2498276..2498773 | - | 498 | WP_001421634.1 | hypothetical protein | VF |
| A4V61_RS13250 () | 2499280..2499471 | + | 192 | WP_001287793.1 | DUF4222 domain-containing protein | - |
| A4V61_RS13255 () | 2499596..2499757 | - | 162 | WP_000124170.1 | hypothetical protein | - |
| A4V61_RS13260 () | 2499854..2500477 | - | 624 | WP_001260379.1 | hypothetical protein | - |
| A4V61_RS26100 () | 2500996..2501223 | - | 228 | WP_155522400.1 | hypothetical protein | - |
| A4V61_RS13265 () | 2501548..2502024 | + | 477 | WP_000258198.1 | ProQ/FinO family protein | - |
| A4V61_RS13270 () | 2502141..2502575 | - | 435 | WP_021554599.1 | hypothetical protein | - |
| A4V61_RS13280 () | 2502854..2503090 | - | 237 | WP_000958091.1 | AlpA family transcriptional regulator | - |
| A4V61_RS13285 () | 2503159..2503734 | - | 576 | WP_001013354.1 | hypothetical protein | - |
| A4V61_RS26310 () | 2503749..2503898 | + | 150 | WP_001421645.1 | hypothetical protein | - |
| A4V61_RS13290 () | 2504119..2504850 | - | 732 | WP_001075480.1 | inovirus Gp2 family protein | - |
| A4V61_RS13295 () | 2505153..2505803 | + | 651 | WP_032328087.1 | IS66 family transposase IS679 | Transposase |
| A4V61_RS13300 () | 2505803..2506150 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| A4V61_RS13305 () | 2506252..2507784 | - | 1533 | WP_072328008.1 | IS3 family transposase ISKpn38 | Transposase |
| A4V61_RS13310 () | 2507835..2509406 | + | 1572 | WP_032328013.1 | IS66 family transposase ISCro1 | Transposase |
| A4V61_RS13320 () | 2509865..2510845 | - | 981 | WP_213079564.1 | IS5 family transposase IS5D | Transposase |
| A4V61_RS13330 () | 2511810..2512619 | + | 810 | WP_000816117.1 | hypothetical protein | - |
| A4V61_RS13335 () | 2512616..2513548 | - | 933 | WP_021538213.1 | hypothetical protein | - |
| A4V61_RS13340 () | 2513655..2514539 | + | 885 | WP_000010388.1 | 50S ribosome-binding GTPase | - |
| A4V61_RS26315 () | 2514658..2514918 | + | 261 | WP_172902803.1 | hypothetical protein | - |
| A4V61_RS26320 () | 2514958..2515335 | + | 378 | WP_172902802.1 | hypothetical protein | - |
| A4V61_RS13350 () | 2515341..2515574 | + | 234 | WP_001278281.1 | DUF905 family protein | - |
| A4V61_RS13360 () | 2515673..2516491 | + | 819 | WP_001234693.1 | DUF945 domain-containing protein | - |
| A4V61_RS13365 () | 2516583..2517068 | + | 486 | WP_000206660.1 | antirestriction protein | - |
| A4V61_RS13370 () | 2517083..2517559 | + | 477 | WP_032328266.1 | RadC family protein | - |
| A4V61_RS13375 () | 2517628..2517849 | + | 222 | WP_000692295.1 | DUF987 domain-containing protein | - |
| A4V61_RS13380 () | 2517929..2518297 | + | 369 | WP_024183700.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| A4V61_RS13385 () | 2518386..2518763 | + | 378 | WP_032328463.1 | TA system toxin CbtA family protein | Toxin Detail |
| A4V61_RS13390 () | 2518760..2519248 | + | 489 | WP_032328344.1 | hypothetical protein | - |
| A4V61_RS13395 () | 2519260..2519457 | + | 198 | WP_000839291.1 | DUF957 domain-containing protein | - |
| A4V61_RS13400 () | 2519542..2520408 | + | 867 | WP_001280426.1 | DUF4942 domain-containing protein | - |
| A4V61_RS13405 () | 2520480..2520743 | + | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| A4V61_RS13410 () | 2520740..2521066 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A4V61_RS13415 () | 2521512..2522756 | + | 1245 | WP_001219071.1 | hypothetical protein ; Integrase | Integrase |
| A4V61_RS13425 () | 2522819..2523516 | + | 698 | Protein_2432 | IS1 family transposase IS1R | Transposase |
| A4V61_RS13430 () | 2523710..2524717 | + | 1008 | WP_000572864.1 | hypothetical protein | - |
| A4V61_RS13435 () | 2524783..2525883 | - | 1101 | WP_000214245.1 | DNA cytosine methyltransferase | - |
| A4V61_RS13440 () | 2526117..2526590 | - | 474 | WP_001222997.1 | DNA mismatch endonuclease Vsr | - |
| A4V61_RS13445 () | 2526736..2527047 | - | 312 | WP_000379387.1 | conjugal transfer protein TraD | - |
| A4V61_RS13450 () | 2527880..2529400 | + | 1521 | WP_032328505.1 | MobA/MobL family protein | - |
| A4V61_RS13455 () | 2529494..2529709 | + | 216 | WP_000132147.1 | hypothetical protein | - |
| A4V61_RS13460 () | 2529684..2530124 | - | 441 | WP_000866053.1 | hypothetical protein | - |
| A4V61_RS13465 () | 2530486..2531751 | + | 1266 | WP_032328506.1 | tetratricopeptide repeat protein | - |
| A4V61_RS13470 () | 2531753..2532172 | + | 420 | WP_000208713.1 | TIR domain-containing protein | - |
| A4V61_RS13475 () | 2532217..2532492 | - | 276 | WP_000430100.1 | membrane protein | - |
| A4V61_RS13480 () | 2532503..2533054 | - | 552 | WP_001224785.1 | lipoprotein | - |
| A4V61_RS13485 () | 2533070..2533635 | - | 566 | Protein_2444 | hypothetical protein | - |
| A4V61_RS13490 () | 2534141..2534473 | - | 333 | WP_001059602.1 | hypothetical protein | - |
| A4V61_RS13500 () | 2535358..2536059 | + | 702 | WP_000020958.1 | hypothetical protein | - |
| A4V61_RS13505 () | 2536161..2536628 | + | 468 | WP_001233364.1 | DUF4756 family protein | - |
| A4V61_RS13510 () | 2536782..2537186 | + | 405 | WP_001287394.1 | H-NS histone family protein | - |
| A4V61_RS13520 () | 2538103..2538483 | - | 381 | WP_000711008.1 | hypothetical protein | - |
| A4V61_RS13525 () | 2538533..2538823 | - | 291 | WP_000041811.1 | hypothetical protein | - |
| A4V61_RS13530 () | 2538918..2539205 | - | 288 | WP_032328509.1 | hypothetical protein | - |
| A4V61_RS13535 () | 2539222..2539608 | - | 387 | WP_000343752.1 | hypothetical protein | - |
| A4V61_RS13540 () | 2539621..2539932 | - | 312 | WP_000837633.1 | hypothetical protein | - |
| A4V61_RS13545 () | 2539944..2540177 | - | 234 | WP_000614748.1 | AlpA family transcriptional regulator | - |
| A4V61_RS13550 () | 2540394..2541254 | - | 861 | WP_000158648.1 | hypothetical protein | - |
| A4V61_RS13560 () | 2542174..2543712 | + | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| A4V61_RS13565 () | 2544077..2545411 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| A4V61_RS13570 () | 2545491..2547638 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| A4V61_RS13575 () | 2547697..2549154 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| A4V61_RS13580 () | 2549391..2550908 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| A4V61_RS13585 () | 2551032..2551205 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| A4V61_RS13590 () | 2551233..2551529 | - | 297 | WP_071597404.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| A4V61_RS13600 () | 2551756..2552028 | - | 273 | WP_000405647.1 | N-acetyltransferase | - |
| A4V61_RS13605 () | 2552040..2552270 | - | 231 | WP_000371704.1 | (4Fe-4S)-binding protein | - |
| A4V61_RS13610 () | 2552451..2554082 | + | 1632 | WP_001216490.1 | sensor histidine kinase | - |
| A4V61_RS13615 () | 2554079..2554798 | + | 720 | WP_000611288.1 | D-3-phosphoglycerate dehydrogenase | VF |
| A4V61_RS13625 () | 2555369..2556709 | + | 1341 | WP_000899522.1 | anaerobic C4-dicarboxylate transporter DcuB | - |
| A4V61_RS13630 () | 2556787..2558433 | + | 1647 | WP_000066707.1 | class I fumarate hydratase | - |
| A4V61_RS13635 () | 2558556..2559185 | + | 630 | WP_000198756.1 | DUF2238 domain-containing protein | - |
| A4V61_RS13640 () | 2559324..2560745 | - | 1422 | WP_000028123.1 | melibiose:sodium transporter MelB | - |
| A4V61_RS13645 () | 2560848..2562203 | - | 1356 | WP_000986601.1 | alpha-galactosidase | - |
| A4V61_RS13650 () | 2562486..2563394 | + | 909 | WP_001090758.1 | transcriptional regulator MelR | - |
| A4V61_RS13655 () | 2563593..2565860 | + | 2268 | WP_001381593.1 | arginine decarboxylase | - |
| A4V61_RS13660 () | 2566185..2566946 | + | 762 | WP_001217060.1 | Exodeoxyribonuclease 7 large subunit | VF |
| A4V61_RS13665 () | 2567083..2568420 | + | 1338 | WP_000093154.1 | arginine/agmatine antiporter | - |
| A4V61_RS13670 () | 2568524..2570167 | + | 1644 | WP_000919792.1 | Farnesyl diphosphate synthase | VF |
| A4V61_RS13675 () | 2570164..2570832 | + | 669 | WP_000697915.1 | Regulator of RpoS | VF |
| A4V61_RS13680 () | 2570833..2571933 | + | 1101 | WP_001051092.1 | two-component system sensor histidine kinase PmrB | - |
| A4V61_RS13685 () | 2571909..2571998 | - | 90 | WP_000797657.1 | LpxT activity modulator PmrR | - |
| A4V61_RS13690 () | 2572110..2573612 | - | 1503 | WP_001298520.1 | glycine betaine/L-proline transporter ProP | - |
| A4V61_RS13695 () | 2573876..2574753 | - | 878 | Protein_2481 | hypothetical protein | - |
| A4V61_RS13700 () | 2574750..2576978 | - | 2229 | WP_000288624.1 | clamp-binding protein CrfC | - |
| A4V61_RS13710 () | 2577379..2577714 | + | 336 | WP_001300891.1 | phnA family protein | - |
| A4V61_RS13715 () | 2578172..2578615 | + | 444 | WP_001131339.1 | VOC family metalloprotein YjdN | - |
| A4V61_RS13720 () | 2578748..2579536 | + | 789 | WP_001193408.1 | SpoIVB peptidase | VF |
| A4V61_RS13725 () | 2579561..2580577 | + | 1017 | WP_000992002.1 | phosphonate ABC transporter substrate-binding protein | - |
| A4V61_RS13730 () | 2580667..2581446 | + | 780 | WP_001398152.1 | phosphonate ABC transporter, permease protein PhnE | - |
| A4V61_RS13735 () | 2581467..2582192 | + | 726 | WP_001351883.1 | phosphonate metabolism transcriptional regulator PhnF | - |
| A4V61_RS13740 () | 2582193..2582645 | + | 453 | WP_000542796.1 | phosphonate C-P lyase system protein PhnG | - |
| A4V61_RS13745 () | 2582642..2583226 | + | 585 | WP_000171611.1 | phosphonate C-P lyase system protein PhnH | - |
| A4V61_RS13750 () | 2583226..2584290 | + | 1065 | WP_001355609.1 | alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI | - |
| A4V61_RS13755 () | 2584283..2585128 | + | 846 | WP_000002298.1 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | - |
| A4V61_RS13760 () | 2585125..2585883 | + | 759 | WP_001075518.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| A4V61_RS13765 () | 2585994..2586674 | + | 681 | WP_000611395.1 | phosphonate C-P lyase system protein PhnL | - |
| A4V61_RS13770 () | 2586671..2587807 | + | 1137 | WP_000586287.1 | alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase | - |
| A4V61_RS13775 () | 2587807..2588364 | + | 558 | WP_000147007.1 | ribose 1,5-bisphosphokinase | - |
| A4V61_RS13780 () | 2588351..2588785 | + | 435 | WP_001110490.1 | aminoalkylphosphonate N-acetyltransferase | - |
| A4V61_RS13785 () | 2588787..2589545 | + | 759 | WP_000059930.1 | phosphonate metabolism protein PhnP | - |
| A4V61_RS13790 () | 2589692..2590021 | - | 330 | WP_000819746.1 | protein YjdP | - |
| A4V61_RS13795 () | 2590090..2590539 | - | 450 | WP_000716794.1 | bifunctional allose-6-phosphate isomerase/ribose-5-phosphate isomerase RpiB | - |
| A4V61_RS13805 () | 2590898..2591788 | + | 891 | WP_000083214.1 | als operon DNA-binding transcriptional repressor AlsR | - |
| A4V61_RS13810 () | 2591847..2592781 | + | 935 | Protein_2502 | D-allose transporter substrate-binding protein | - |
| A4V61_RS13815 () | 2592908..2594440 | + | 1533 | Protein_2503 | D-allose ABC transporter ATP-binding protein AlsA | - |
| A4V61_RS13820 () | 2594419..2595399 | + | 981 | WP_000507106.1 | D-allose ABC transporter permease | - |
| A4V61_RS13825 () | 2595410..2596105 | + | 696 | WP_001355611.1 | hypothetical protein | VF |
| A4V61_RS13830 () | 2596089..2597018 | + | 930 | WP_001171693.1 | allose kinase | - |
| A4V61_RS13835 () | 2597291..2599276 | + | 1986 | WP_001355612.1 | alkyl sulfatase YjcS | - |
| A4V61_RS13840 () | 2599485..2599760 | + | 276 | WP_001355613.1 | hypothetical protein | - |
| A4V61_RS13845 () | 2599779..2600810 | + | 1032 | WP_000446376.1 | multidrug efflux transporter periplasmic adaptor subunit MdtN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|