MGE detailed information
MGE type: Conjugative plasmid MGE length: 96607 bp
Accession: NZ_CP024258 Location: 1..96607 Organism: Escherichia coli O25:H16 strain F5505-C1 Replicon: plasmid unnamed1
Accession: NZ_CP024258 Location: 1..96607 Organism: Escherichia coli O25:H16 strain F5505-C1 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COG37_RS27200 () | 218..397 | - | 180 | WP_074483066.1 | hypothetical protein | - |
| COG37_RS25535 () | 1097..1954 | - | 858 | WP_074480778.1 | incFII family plasmid replication initiator RepA | - |
| COG37_RS25540 () | 1947..2021 | - | 75 | WP_077135826.1 | RepA leader peptide Tap | - |
| COG37_RS25550 () | 2255..2512 | - | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| COG37_RS25555 () | 2796..3002 | - | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 2989..3050 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 2989..3050 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 2989..3050 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 2989..3050 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| COG37_RS25565 () | 3202..3666 | - | 465 | WP_001756974.1 | hypothetical protein | - |
| COG37_RS25570 () | 3821..4411 | - | 591 | WP_074480776.1 | DUF2726 domain-containing protein | - |
| COG37_RS25575 () | 4449..4658 | - | 210 | WP_001353639.1 | transcriptional regulator | - |
| COG37_RS25580 () | 4704..5105 | - | 402 | WP_077760680.1 | thermonuclease family protein | - |
| COG37_RS25590 () | 5162..5839 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| COG37_RS25595 () | 5839..6186 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| COG37_RS25600 () | 6206..7777 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| COG37_RS25605 () | 7804..7935 | - | 132 | WP_099558417.1 | nuclease | - |
| COG37_RS25610 () | 8117..8329 | - | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| COG37_RS25615 () | 8461..9021 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| COG37_RS25620 () | 9076..9810 | - | 735 | WP_074481268.1 | conjugal transfer pilus acetylase TraX | - |
| COG37_RS25625 () | 9832..10251 | - | 420 | WP_000451342.1 | hypothetical protein | - |
| COG37_RS25630 () | 10300..15570 | - | 5271 | WP_074481269.1 | Multifunctional conjugation protein TraI | Relaxase |
| COG37_RS25635 () | 15570..17822 | - | 2253 | WP_099558419.1 | type IV conjugative transfer system coupling protein TraD | - |
| COG37_RS25640 () | 17873..18610 | - | 738 | WP_074481271.1 | hypothetical protein | - |
| COG37_RS25645 () | 18813..19544 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| COG37_RS25650 () | 19558..20067 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| COG37_RS25655 () | 20064..22889 | - | 2826 | WP_074481272.1 | conjugal transfer mating pair stabilization protein TraG | - |
| COG37_RS25660 () | 22886..24259 | - | 1374 | WP_074481288.1 | conjugal transfer protein TraH | - |
| COG37_RS25665 () | 24259..24621 | - | 363 | WP_074481273.1 | P-type conjugative transfer protein TrbJ | - |
| COG37_RS25670 () | 24551..25096 | - | 546 | WP_000059698.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| COG37_RS25675 () | 25083..25364 | - | 282 | WP_000549796.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| COG37_RS25680 () | 25489..26232 | - | 744 | WP_001749618.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| COG37_RS25685 () | 26225..26482 | - | 258 | WP_001732201.1 | conjugal transfer protein TrbE | - |
| COG37_RS25690 () | 26509..28317 | - | 1809 | WP_074481274.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| COG37_RS25695 () | 28314..28736 | - | 423 | WP_074481275.1 | HNH endonuclease | - |
| COG37_RS25700 () | 28761..29132 | - | 372 | WP_000056341.1 | hypothetical protein | - |
| COG37_RS25705 () | 29129..29767 | - | 639 | WP_001035183.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| COG37_RS27050 () | 30196..30375 | - | 180 | WP_001750891.1 | hypothetical protein | - |
| COG37_RS27205 () | 30467..30556 | - | 90 | Protein_35 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| COG37_RS25715 () | 30584..31036 | - | 453 | WP_001732196.1 | hypothetical protein | - |
| COG37_RS25720 () | 31066..31527 | - | 462 | WP_000277848.1 | hypothetical protein | - |
| COG37_RS25725 () | 31553..31870 | - | 318 | Protein_38 | TraU family protein | - |
| COG37_RS25730 () | 32040..32348 | - | 309 | WP_000412445.1 | hypothetical protein | - |
| COG37_RS25735 () | 32374..33366 | - | 993 | WP_000830836.1 | conjugal transfer pilus assembly protein TraU | - |
| COG37_RS25740 () | 33363..33995 | - | 633 | WP_074481277.1 | type-F conjugative transfer system protein TraW | - |
| COG37_RS25745 () | 33992..34378 | - | 387 | WP_001399765.1 | type-F conjugative transfer system protein TrbI | - |
| COG37_RS25750 () | 34375..37005 | - | 2631 | WP_053916784.1 | type IV secretion system protein TraC | - |
| COG37_RS25755 () | 37187..37423 | - | 237 | WP_000549576.1 | hypothetical protein | - |
| COG37_RS25760 () | 37416..37637 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| COG37_RS25765 () | 37772..38287 | - | 516 | WP_074481278.1 | type IV conjugative transfer system lipoprotein TraV | - |
| COG37_RS25770 () | 38284..38535 | - | 252 | WP_074481279.1 | conjugal transfer protein TrbG | - |
| COG37_RS25775 () | 38528..38881 | - | 354 | WP_071594551.1 | conjugal transfer protein TrbD | - |
| COG37_RS25780 () | 38835..39401 | - | 567 | WP_044715774.1 | conjugal transfer protein TraP | - |
| COG37_RS25785 () | 39391..40842 | - | 1452 | WP_099558421.1 | conjugal transfer protein TraB | - |
| COG37_RS25790 () | 40842..41570 | - | 729 | WP_001230778.1 | type-F conjugative transfer system secretin TraK | - |
| COG37_RS25795 () | 41557..42123 | - | 567 | WP_000399801.1 | type IV conjugative transfer system protein TraE | - |
| COG37_RS25800 () | 42145..42456 | - | 312 | WP_000012116.1 | type IV conjugative transfer system protein TraL | - |
| COG37_RS25805 () | 42471..42836 | - | 366 | WP_001098999.1 | type IV conjugative transfer system pilin TraA | - |
| COG37_RS25810 () | 42868..43263 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| COG37_RS25815 () | 43362..44051 | - | 690 | WP_000283390.1 | conjugal transfer transcriptional regulator TraJ | - |
| COG37_RS25820 () | 44238..44621 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| COG37_RS25825 () | 44943..45545 | + | 603 | WP_077631932.1 | hypothetical protein | VF |
| COG37_RS25830 () | 45842..46660 | - | 819 | WP_074481281.1 | DUF945 domain-containing protein | - |
| COG37_RS25835 () | 46769..47065 | - | 297 | WP_001272248.1 | hypothetical protein | - |
| COG37_RS25855 () | 47988..48149 | - | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 48201..48401 | - | 201 | NuclAT_0 | - | Antitoxin Detail |
| - () | 48201..48401 | - | 201 | NuclAT_0 | - | Antitoxin Detail |
| - () | 48201..48401 | - | 201 | NuclAT_0 | - | Antitoxin Detail |
| - () | 48201..48401 | - | 201 | NuclAT_0 | - | Antitoxin Detail |
| COG37_RS25860 () | 48358..48672 | - | 315 | WP_000872086.1 | hypothetical protein | - |
| COG37_RS25865 () | 48669..49388 | - | 720 | WP_001276220.1 | plasmid SOS inhibition protein A | - |
| COG37_RS25870 () | 49385..49819 | - | 435 | WP_000845955.1 | conjugation system SOS inhibitor PsiB | - |
| COG37_RS25875 () | 49874..51838 | - | 1965 | WP_074481283.1 | ParB/RepB/Spo0J family partition protein | - |
| COG37_RS25880 () | 51899..52132 | - | 234 | WP_000005975.1 | DUF905 domain-containing protein | - |
| COG37_RS25885 () | 52189..52716 | - | 528 | WP_074481284.1 | single-stranded DNA-binding protein | - |
| COG37_RS27210 () | 53018..53533 | + | 516 | Protein_68 | hypothetical protein | - |
| COG37_RS25900 () | 53619..54182 | - | 564 | WP_001297832.1 | class I SAM-dependent methyltransferase | - |
| COG37_RS25905 () | 54227..55587 | - | 1361 | Protein_70 | DUF3560 domain-containing protein | - |
| COG37_RS25910 () | 55639..55869 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| COG37_RS27215 () | 56384..56924 | + | 541 | Protein_72 | hypothetical protein | - |
| COG37_RS25920 () | 56903..57094 | - | 192 | WP_001024838.1 | hypothetical protein | - |
| COG37_RS25925 () | 57091..57513 | - | 423 | WP_000271732.1 | DUF1380 family protein | - |
| COG37_RS25930 () | 57560..57862 | - | 303 | WP_072105978.1 | antirestriction protein | - |
| COG37_RS27220 () | 58399..59169 | - | 771 | WP_074481285.1 | hypothetical protein | - |
| COG37_RS25945 () | 59214..59648 | - | 435 | WP_074481286.1 | DUF1380 family protein | - |
| COG37_RS25950 () | 59662..59883 | - | 222 | WP_001104893.1 | hypothetical protein | - |
| COG37_RS25955 () | 59884..60567 | - | 684 | WP_074481287.1 | DNA methylase | - |
| COG37_RS25965 () | 61264..62279 | - | 1016 | Protein_80 | IS110 family transposase ISShdy1 | Transposase |
| COG37_RS25970 () | 62377..62620 | - | 244 | Protein_81 | hypothetical protein | - |
| COG37_RS25975 () | 62617..63393 | - | 777 | Protein_82 | DUF1281 domain-containing protein | - |
| COG37_RS25980 () | 63496..64668 | + | 1173 | WP_000952428.1 | IS21 family transposase ISEc62 | Transposase |
| COG37_RS25985 () | 64668..65462 | + | 795 | WP_000544809.1 | IS21 family transposase ISEc62 | Transposase |
| COG37_RS25990 () | 65479..65964 | - | 486 | WP_074481298.1 | DUF1281 domain-containing protein | - |
| COG37_RS26000 () | 66547..67518 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| COG37_RS26005 () | 67518..68684 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| COG37_RS26010 () | 69217..69690 | - | 474 | Protein_88 | IS3 family transposase IS629 | Transposase |
| COG37_RS27225 () | 69780..71286 | - | 1507 | Protein_89 | group II intron reverse transcriptase/maturase | - |
| COG37_RS26025 () | 71959..72698 | - | 740 | Protein_90 | IS3 family transposase IS1203 | Transposase |
| COG37_RS26030 () | 72759..73538 | + | 780 | Protein_91 | IS66 family transposase ISSgsp1 | Transposase |
| COG37_RS26040 () | 73682..74307 | - | 626 | Protein_92 | transposase | - |
| COG37_RS26045 () | 74758..75735 | + | 978 | WP_074480756.1 | RepB family plasmid replication initiator protein | - |
| COG37_RS26050 () | 75978..76718 | - | 741 | WP_001066944.1 | tyrosine-type recombinase/integrase | - |
| COG37_RS26055 () | 76839..76967 | - | 129 | WP_032164396.1 | hypothetical protein | - |
| COG37_RS26065 () | 77918..78223 | + | 306 | WP_000336590.1 | Major pilu subunit operon regulatory protein PapB | VF |
| COG37_RS26070 () | 78475..79371 | + | 897 | WP_001695115.1 | transcriptional regulator HilD | - |
| COG37_RS26075 () | 79385..79828 | + | 444 | WP_001220546.1 | hypothetical protein | VF |
| COG37_RS26080 () | 80127..80837 | + | 711 | WP_113705914.1 | Toxin coregulated pilin | VF |
| COG37_RS26085 () | 80900..82471 | + | 1572 | WP_001759776.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| COG37_RS26090 () | 82490..82903 | + | 414 | WP_001201934.1 | TcpQ domain-containing protein | - |
| COG37_RS26095 () | 82921..84378 | + | 1458 | WP_000768353.1 | hypothetical protein | - |
| COG37_RS27055 () | 84381..84941 | + | 561 | WP_001047585.1 | hypothetical protein | - |
| COG37_RS26105 () | 84943..85770 | + | 828 | WP_001054274.1 | hypothetical protein | - |
| COG37_RS26110 () | 85758..86243 | + | 486 | WP_000336152.1 | hypothetical protein | - |
| COG37_RS26115 () | 86441..87775 | + | 1335 | WP_001380305.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| COG37_RS26120 () | 87759..88784 | + | 1026 | WP_001759772.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| COG37_RS26125 () | 88799..89920 | + | 1122 | WP_000857355.1 | hypothetical protein | - |
| COG37_RS26130 () | 89923..90777 | + | 855 | WP_000289148.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| COG37_RS26140 () | 91795..93023 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| COG37_RS26145 () | 93226..93636 | - | 411 | Protein_111 | Tn3 family transposase ISEc63 | Transposase |
| COG37_RS26150 () | 93912..94492 | - | 581 | Protein_112 | IS3 family transposase IS2 | Transposase |
| COG37_RS26155 () | 94649..95829 | - | 1181 | Protein_113 | DUF3800 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|